Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 1.6e-262 909.8 879 100.0
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 2.4e-234 816.2 879 95.0
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 9.2e-186 654.8 852 86.2
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 4.8e-158 562.8 881 79.3
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 1.2e-156 558.1 879 75.7
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 2.9e-155 553.5 883 78.0
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 3.3e-151 540.0 877 77.5
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 2.4e-149 533.9 876 80.1
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 2.4e-149 533.9 876 80.1
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 3.2e-146 523.5 872 75.1
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 9.3e-138 495.4 866 77.8
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 3.9e-112 410.2 879 71.1
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 5.3e-109 399.8 869 69.9
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 4.8e-102 376.7 882 70.6
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 2.7e-89 334.3 876 65.4
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 9.8e-87 325.9 877 69.3
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 8.3e-86 322.8 876 66.9
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 1.4e-85 322.0 881 68.8
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 1.1e-82 312.4 872 65.4
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 1.1e-82 312.4 871 66.1
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 3.6e-81 307.4 882 68.4
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 4.7e-81 307.0 876 62.9
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 1.4e-80 305.4 868 67.7
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 1.8e-80 305.1 879 68.4
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 5.2e-80 303.5 868 67.9
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 1.2e-79 302.4 883 56.5
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 2.6e-79 301.2 880 63.4
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.7e-78 298.5 878 65.4
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 3.7e-78 297.4 874 67.8
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 4.1e-77 293.9 877 67.0
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 3.9e-75 287.3 875 65.3
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 4.3e-74 283.9 878 66.2
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 1.6e-73 282.0 882 62.1
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 2.4e-69 268.1 900 41.1
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 3.2e-69 267.7 874 66.0
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 4.1e-69 267.3 872 66.4
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 6.0e-68 263.5 880 60.2
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 4.3e-66 257.3 875 59.5
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 3.6e-65 254.2 879 63.5
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 3.1e-64 251.1 878 64.9
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 8.3e-62 243.0 865 63.4
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 8.3e-62 243.0 880 60.8
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 2.4e-61 241.5 877 62.8
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 5.4e-61 240.4 878 62.5
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 1.2e-60 239.2 873 63.8
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 3.5e-60 237.7 884 62.0
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 4.6e-60 237.3 891 62.7
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 7.8e-60 236.5 872 62.6
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 7.8e-60 236.5 873 61.6
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 2.3e-59 235.0 872 65.3
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 6.6e-59 233.4 202 57.9
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 1.1e-58 232.6 872 62.4
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 7.3e-58 229.9 879 63.4
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 9.5e-58 229.6 872 62.3
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 4.7e-57 227.3 875 63.9
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 1.4e-56 225.7 874 63.7
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 1.4e-56 225.7 874 63.6
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 2.3e-56 224.9 878 63.2
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 5.2e-56 223.8 873 61.4
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 1.2e-55 222.6 873 63.3
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 2.6e-55 221.5 881 61.0
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 4.4e-55 220.7 880 59.5
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 4.4e-55 220.7 869 63.3
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 4.4e-55 220.7 366 68.3
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 1.3e-54 219.2 894 55.9
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 1.4e-53 215.7 366 68.0
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 1.9e-53 215.3 879 63.5
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 3.2e-53 214.5 878 58.9
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 2.7e-52 211.5 445 53.5
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 4.6e-52 210.7 868 63.2
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 1.0e-51 209.5 366 67.2
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 1.9e-50 205.3 879 64.2
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 1.9e-50 205.3 868 58.3
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 7.3e-50 203.4 197 50.8
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 6.9e-48 196.8 372 63.7
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 6.9e-48 196.8 368 64.9
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 1.5e-47 195.7 882 60.4
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 5.8e-47 193.7 877 62.1
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 2.9e-46 191.4 380 62.1
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 6.4e-46 190.3 380 63.4
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 4.6e-44 184.1 384 63.3
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 1.0e-43 183.0 365 64.4
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 1.5e-42 179.1 878 62.0
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 5.6e-42 177.2 868 62.8
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 2.8e-41 174.9 839 60.9
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 6.2e-41 173.7 799 65.8
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 8.1e-41 173.3 839 60.8
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 3.1e-40 171.4 836 59.2
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 7.6e-39 166.8 175 47.4
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 2.2e-38 165.2 373 61.4
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 5.4e-37 160.6 180 43.9
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 2.5e-34 151.8 877 55.5
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 3.6e-33 147.9 412 45.6
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 6.9e-32 143.7 101 70.3
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 9.0e-32 143.3 386 57.3
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 7.6e-31 140.2 238 39.9
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 1.7e-30 139.0 378 58.5
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 7.9e-28 130.2 329 32.5
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 2.3e-27 128.6 183 36.6
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 1.1e-26 126.3 323 29.4
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 1.3e-25 122.9 372 55.9
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 3.2e-21 108.2 105 70.5
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 1.6e-20 105.9 393 53.2
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 2.3e-19 102.1 149 38.9
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 1.1e-18 99.8 142 40.8
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 7.9e-12 77.0 63 55.6
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 1.0e-06 60.1 125 34.4
Cc00_g04080 Coffea canephora HOM05D009346 ORTHO05D020421 2.2e-06 58.9 61 41.0
Gorai.001G138600 Gossypium raimondii HOM05D006556 ORTHO05D025699 2.9e-06 58.5 39 71.8


User provided reference genes

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