Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 3.4e-38 161.8 81 100.0
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 1.0e-37 160.2 81 98.8
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 3.6e-27 125.2 73 82.2
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 8.8e-26 120.6 81 76.5
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 3.3e-25 118.6 83 72.3
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 5.7e-25 117.9 81 71.6
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 7.5e-25 117.5 81 74.1
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 2.8e-24 115.5 68 86.8
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 6.3e-24 114.4 72 81.9
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 1.8e-23 112.8 76 71.1
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 2.4e-23 112.5 74 73.0
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 3.1e-23 112.1 74 73.0
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 5.3e-23 111.3 73 74.0
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 7.0e-23 110.9 81 69.1
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 9.1e-23 110.5 77 71.4
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 2.7e-22 109.0 75 74.7
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 2.7e-22 109.0 85 69.4
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 3.5e-22 108.6 68 76.5
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 3.5e-22 108.6 68 76.5
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 4.5e-22 108.2 68 75.0
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 4.5e-22 108.2 68 82.4
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 5.9e-22 107.8 79 69.6
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 1.7e-21 106.3 66 81.8
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 5.0e-21 104.8 74 68.9
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 6.5e-21 104.4 72 73.6
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 8.5e-21 104.0 81 70.4
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 1.1e-20 103.6 72 72.2
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 1.1e-20 103.6 72 72.2
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 1.1e-20 103.6 77 71.4
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 1.5e-20 103.2 74 68.9
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.5e-20 103.2 60 81.7
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 1.9e-20 102.8 59 81.4
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 2.5e-20 102.4 73 72.6
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 3.2e-20 102.1 81 64.2
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 3.2e-20 102.1 55 87.3
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 4.2e-20 101.7 81 63.0
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 4.2e-20 101.7 68 72.1
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 5.5e-20 101.3 72 70.8
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 9.4e-20 100.5 78 67.9
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 9.4e-20 100.5 77 66.2
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.2e-19 100.1 64 76.6
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 1.2e-19 100.1 59 81.4
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 1.6e-19 99.8 58 82.8
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 2.7e-19 99.0 72 68.1
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 3.6e-19 98.6 60 76.7
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 3.6e-19 98.6 74 63.5
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 3.6e-19 98.6 64 76.6
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 4.7e-19 98.2 58 81.0
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 4.7e-19 98.2 78 69.2
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 8.0e-19 97.4 85 60.0
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 1.0e-18 97.1 71 73.2
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.4e-18 96.7 64 71.9
Aa31LG3G18000 Aethionema arabicum HOM05D006753 ORTHO05D008521 1.8e-18 96.3 76 64.5
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 1.8e-18 96.3 75 64.0
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 1.8e-18 96.3 77 66.2
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 1.8e-18 96.3 63 71.4
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 2.3e-18 95.9 66 69.7
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 3.0e-18 95.5 70 64.3
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 3.0e-18 95.5 82 62.2
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 4.0e-18 95.1 60 75.0
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 4.0e-18 95.1 63 69.8
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 5.2e-18 94.7 60 71.7
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 6.8e-18 94.4 64 70.3
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 6.8e-18 94.4 58 74.1
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 8.8e-18 94.0 56 82.1
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 8.8e-18 94.0 63 69.8
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 8.8e-18 94.0 63 69.8
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 1.2e-17 93.6 71 70.4
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 2.0e-17 92.8 57 75.4
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 4.4e-17 91.7 78 61.5
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 4.4e-17 91.7 56 76.8
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 4.4e-17 91.7 80 62.5
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 5.7e-17 91.3 73 63.0
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 5.7e-17 91.3 62 71.0
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 5.7e-17 91.3 62 71.0
Carub.0006s0749 Capsella rubella HOM05D006753 ORTHO05D008521 7.5e-17 90.9 82 62.2
A10p28190 Brassica napus HOM05D006753 ORTHO05D008521 9.8e-17 90.5 81 63.0
C09p68400 Brassica napus HOM05D006753 ORTHO05D008521 9.8e-17 90.5 81 63.0
BraA10t44868Z Brassica rapa HOM05D006753 ORTHO05D008521 9.8e-17 90.5 81 63.0
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 9.8e-17 90.5 72 66.7
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 1.7e-16 89.7 75 62.7
BcaB08g37248 Brassica carinata HOM05D006753 ORTHO05D008521 2.2e-16 89.4 81 63.0
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 2.8e-16 89.0 57 70.2
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 2.8e-16 89.0 69 65.2
AL5G33000 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 3.7e-16 88.6 76 60.5
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 6.3e-16 87.8 82 57.3
BolC9t59587H Brassica oleracea HOM05D006753 ORTHO05D008521 6.3e-16 87.8 78 60.3
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 2.4e-15 85.9 74 59.5
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 2.4e-15 85.9 62 64.5
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 4.1e-15 85.1 59 72.9
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 5.4e-15 84.7 72 63.9
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 5.4e-15 84.7 72 63.9
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 5.4e-15 84.7 72 63.9
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 5.4e-15 84.7 51 78.4
SEGI_09956 Sequoiadendron giganteum HOM05D006753 ORTHO05D008521 7.0e-15 84.3 60 63.3
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 1.2e-14 83.6 58 70.7
CDE05G2438 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 5.9e-14 81.3 60 66.7
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 7.7e-14 80.9 76 55.3
AT5G08535 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 1.3e-13 80.1 61 63.9
CDE05G0871 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 1.3e-13 80.1 59 66.1
SMO115G0110 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 2.9e-13 79.0 67 59.7
SMO166G0033 Selaginella moellendorffii HOM05D006753 ORTHO05D008521 2.9e-13 79.0 67 59.7
AL6G19240 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 3.8e-13 78.6 59 66.1
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 8.5e-13 77.4 67 55.2
Rhsim05G0152000 Rhododendron simsii HOM05D006753 ORTHO05D008521 8.5e-13 77.4 62 58.1
Aqoxy3G04333 Aquilegia oxysepala HOM05D006753 ORTHO05D008521 2.5e-12 75.9 61 62.3
Peaxi162Scf00003g02334 Petunia axillaris HOM05D006753 ORTHO05D008521 5.2e-10 68.2 43 67.4
Mapoly0001s0293 Marchantia polymorpha HOM05D006753 ORTHO05D008521 1.5e-09 66.6 72 45.8
vmacro19681 Vaccinium macrocarpon HOM05D006753 ORTHO05D008521 9.8e-09 63.9 130 34.6
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 1.7e-08 63.2 48 56.2
Haze_17401 Corylus avellana HOM05D006753 ORTHO05D008521 6.3e-08 61.2 40 72.5
Eucgr.J00331 Eucalyptus grandis HOM05D006753 ORTHO05D008521 5.4e-07 58.2 113 36.3
CSS0023466 Camellia sinensis var. sinensis HOM05D006753 ORTHO05D008521 1.2e-06 57.0 32 81.2
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 1.2e-06 57.0 56 48.2
Cre02.g085200 Chlamydomonas reinhardtii HOM05D006753 ORTHO05D008521 1.6e-06 56.6 56 46.4
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 1.6e-06 56.6 56 48.2
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 2.0e-06 56.2 56 51.8
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.7e-06 55.8 58 51.7
CBR_g16096 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-06 55.8 61 47.5
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 2.7e-06 55.8 56 48.2
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 2.7e-06 55.8 56 48.2
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 2.7e-06 55.8 56 48.2
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 3.5e-06 55.5 56 51.8
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 4.5e-06 55.1 56 48.2
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 4.5e-06 55.1 55 49.1
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 4.5e-06 55.1 56 48.2
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 4.5e-06 55.1 56 48.2
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 4.5e-06 55.1 56 48.2
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 4.5e-06 55.1 56 46.4
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 4.5e-06 55.1 55 49.1
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 5.9e-06 54.7 56 48.2
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 5.9e-06 54.7 64 40.6
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 5.9e-06 54.7 56 48.2
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 5.9e-06 54.7 56 48.2
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 5.9e-06 54.7 56 48.2
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 5.9e-06 54.7 56 46.4
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 5.9e-06 54.7 56 48.2
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 5.9e-06 54.7 56 48.2
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 5.9e-06 54.7 56 48.2
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 7.7e-06 54.3 56 46.4
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 7.7e-06 54.3 56 48.2
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 7.7e-06 54.3 56 48.2
Cre02.g105287 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D008521 7.7e-06 54.3 53 45.3
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 7.7e-06 54.3 56 48.2
MCO15G305 Micromonas commoda HOM05D006753 ORTHO05D008521 7.7e-06 54.3 51 43.1
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 7.7e-06 54.3 58 50.0
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 7.7e-06 54.3 56 48.2
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 7.7e-06 54.3 56 48.2
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 7.7e-06 54.3 56 48.2


User provided reference genes

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