Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.7e-98 362.1 192 100.0
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.7e-98 362.1 192 100.0
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 9.6e-96 353.6 192 98.4
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 1.5e-85 319.7 189 87.8
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 2.6e-85 318.9 186 88.7
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 3.4e-85 318.5 192 88.0
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 3.4e-85 318.5 195 87.7
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 4.5e-85 318.2 196 86.7
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 4.5e-85 318.2 191 85.9
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 7.6e-85 317.4 187 88.8
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 4.9e-84 314.7 190 85.8
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 4.9e-84 314.7 190 85.8
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 4.9e-84 314.7 191 85.9
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 6.4e-84 314.3 186 88.2
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 8.4e-84 313.9 191 85.3
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 8.4e-84 313.9 191 84.3
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 1.1e-83 313.5 191 86.4
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 1.4e-83 313.2 190 86.3
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.4e-83 313.2 191 85.3
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.4e-83 312.4 188 85.1
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.4e-83 312.4 184 88.0
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 3.2e-83 312.0 185 87.6
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 4.2e-83 311.6 191 86.4
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 7.1e-83 310.8 190 85.3
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 7.1e-83 310.8 181 89.0
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 1.2e-82 310.1 190 85.3
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 1.6e-82 309.7 183 87.4
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 4.6e-82 308.1 184 85.9
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 4.6e-82 308.1 188 86.2
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 6.0e-82 307.8 182 87.4
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 7.9e-82 307.4 183 87.4
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.3e-81 306.6 190 82.6
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 2.3e-81 305.8 185 84.9
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 3.0e-81 305.4 177 88.7
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 3.0e-81 305.4 189 84.7
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 3.0e-81 305.4 184 86.4
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 3.9e-81 305.1 181 86.7
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 6.7e-81 304.3 187 82.9
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 1.1e-80 303.5 192 82.8
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.1e-80 303.5 191 82.7
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 1.5e-80 303.1 189 82.5
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 1.5e-80 303.1 183 84.7
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 2.5e-80 302.4 199 78.4
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 2.5e-80 302.4 186 82.8
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 3.3e-80 302.0 189 82.0
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 4.3e-80 301.6 189 82.0
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 5.6e-80 301.2 186 82.8
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 9.6e-80 300.4 185 84.9
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.1e-79 299.3 184 84.8
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 2.1e-79 299.3 191 82.2
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 3.7e-79 298.5 188 83.0
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 3.7e-79 298.5 189 81.5
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 3.7e-79 298.5 189 81.5
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 4.8e-79 298.1 182 83.5
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 4.8e-79 298.1 183 84.7
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 1.1e-78 297.0 194 82.0
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 1.4e-78 296.6 198 79.8
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 2.4e-78 295.8 187 81.8
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 4.0e-78 295.0 189 79.4
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 4.0e-78 295.0 181 84.0
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 5.3e-78 294.7 188 79.8
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 5.3e-78 294.7 186 82.8
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 5.3e-78 294.7 193 81.9
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 1.5e-77 293.1 186 80.6
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 1.5e-77 293.1 186 80.6
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 1.5e-77 293.1 186 80.6
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 1.5e-77 293.1 186 80.6
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 2.0e-77 292.7 174 85.6
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 2.6e-77 292.4 185 82.7
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 2.6e-77 292.4 186 81.7
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 3.4e-77 292.0 189 78.8
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 3.4e-77 292.0 189 78.8
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 3.4e-77 292.0 193 80.3
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 5.8e-77 291.2 189 78.8
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 5.8e-77 291.2 189 79.9
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 7.6e-77 290.8 189 78.3
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 9.9e-77 290.4 188 82.4
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 9.9e-77 290.4 228 71.1
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 1.3e-76 290.0 191 79.6
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 1.7e-76 289.7 181 81.8
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 1.7e-76 289.7 178 83.1
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 2.2e-76 289.3 188 79.3
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 2.2e-76 289.3 188 80.9
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 3.8e-76 288.5 186 80.6
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 3.8e-76 288.5 181 81.2
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 8.4e-76 287.3 179 82.1
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 8.4e-76 287.3 174 83.3
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 1.4e-75 286.6 179 82.1
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.4e-75 286.6 183 81.4
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 1.9e-75 286.2 183 81.4
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 7.1e-75 284.3 174 82.2
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 7.1e-75 284.3 188 78.7
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 9.3e-75 283.9 184 77.7
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 1.6e-74 283.1 183 79.8
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 2.7e-74 282.3 185 78.4
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 3.5e-74 282.0 184 80.4
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 4.6e-74 281.6 184 81.0
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 6.0e-74 281.2 215 70.7
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 6.0e-74 281.2 193 79.3
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 6.0e-74 281.2 187 77.0
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 7.9e-74 280.8 207 72.5
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.0e-73 278.9 197 74.1
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 5.1e-73 278.1 192 76.6
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.9e-72 276.2 197 73.6
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 2.5e-72 275.8 190 77.4
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 3.3e-72 275.4 224 67.4
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 1.1e-70 270.4 230 66.1
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 1.4e-70 270.0 185 77.8
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 5.8e-69 264.6 249 59.8
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 6.5e-68 261.2 154 88.3
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 2.7e-66 255.8 184 75.5
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 3.9e-65 251.9 159 81.1
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 2.5e-64 249.2 165 80.6
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.3e-64 248.4 184 73.9
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 7.4e-64 247.7 187 73.3
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 1.6e-63 246.5 174 72.4
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 1.5e-61 240.0 187 67.9
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 5.9e-61 238.0 143 84.6
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 5.5e-59 231.5 134 88.1
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 7.2e-59 231.1 135 88.9
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 1.2e-58 230.3 180 66.1
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 1.8e-57 226.5 137 82.5
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 2.8e-55 219.2 184 60.3
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.8e-54 216.5 130 83.8
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 3.1e-54 215.7 185 62.7
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 9.1e-54 214.2 136 80.9
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 3.8e-52 208.8 140 78.6
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.1e-50 203.0 132 78.8
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.0e-49 200.7 130 83.1
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 3.0e-49 199.1 204 59.3
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 6.7e-49 198.0 132 78.8
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 1.5e-45 186.8 128 74.2
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 3.4e-45 185.7 110 85.5
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 3.3e-40 169.1 113 79.6
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.7e-39 166.8 109 78.9
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.2e-39 164.5 102 79.4
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 2.0e-37 159.8 105 77.1
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 5.0e-36 155.2 100 83.0
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 1.6e-34 150.2 179 45.3
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 2.7e-34 149.4 92 85.9
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.0e-34 147.9 93 79.6
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 2.0e-32 143.3 90 84.4
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 4.4e-32 142.1 102 75.5
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 1.1e-30 137.5 162 44.4
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 5.3e-30 135.2 169 42.0
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.2e-29 134.0 82 82.9
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 1.3e-28 130.6 179 38.5
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 8.5e-28 127.9 101 70.3
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 2.5e-27 126.3 75 86.7
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 9.4e-27 124.4 94 69.1
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 4.7e-26 122.1 104 65.4
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 1.0e-25 120.9 88 64.8
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.2e-18 97.4 63 76.2
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.9e-15 85.5 53 75.5
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.2e-13 80.9 49 79.6
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 7.8e-13 78.2 111 47.7
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.0e-12 77.8 111 46.8
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.0e-12 77.8 111 46.8
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 2.9e-12 76.3 66 69.7
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.8e-12 75.9 111 45.9
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 5.0e-12 75.5 111 45.9
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 1.7e-07 60.5 114 39.5
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.9e-06 57.0 36 77.8
Nn4g25553 Nelumbo nucifera HOM05D004325 ORTHO05D049290 2.4e-06 56.6 38 71.1


User provided reference genes

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