Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RFCV8M Arachis hypogaea HOM05D056776 ORTHO05D000183 2.2e-182 642.9 534 100.0
arahy.Tifrunner.gnm1.ann1.C67J72 Arachis hypogaea HOM05D056776 ORTHO05D000183 1.3e-158 563.9 534 90.4
arahy.Tifrunner.gnm1.ann1.CH6NMW Arachis hypogaea HOM05D000311 ORTHO05D000183 2.3e-22 111.3 509 45.2
Phvul.005G077100 Phaseolus vulgaris HOM05D000311 ORTHO05D000183 1.1e-21 109.0 501 42.7
arahy.Tifrunner.gnm1.ann1.UG8EST Arachis hypogaea HOM05D000311 ORTHO05D000183 5.7e-21 106.7 380 30.5
arahy.Tifrunner.gnm1.ann1.RU3E03 Arachis hypogaea HOM05D000311 ORTHO05D000183 8.2e-20 102.8 380 29.7
VMungo1080G0450 Vigna mungo HOM05D000311 ORTHO05D000183 4.5e-18 97.1 500 39.0
VMungo1080G1611 Vigna mungo HOM05D000311 ORTHO05D000183 4.5e-18 97.1 471 37.2
Glyma.12G233567 Glycine max HOM05D000311 ORTHO05D000183 9.7e-13 79.3 380 41.3
arahy.Tifrunner.gnm1.ann1.9C4868 Arachis hypogaea HOM05D000311 ORTHO05D000183 2.8e-12 77.8 495 43.0
Gohir.A04G108700 Gossypium hirsutum HOM05D000311 ORTHO05D000183 3.7e-12 77.4 181 32.6
Actinidia02870 Actinidia chinensis HOM05D000311 ORTHO05D000183 1.1e-11 75.9 199 35.7
BcaC01g03463 Brassica carinata HOM05D000053 ORTHO05D000035 2.0e-10 71.6 160 30.6
Gohir.A13G202050 Gossypium hirsutum HOM05D000311 ORTHO05D000183 5.9e-10 70.1 191 29.8
Potri.012G007800 Populus trichocarpa HOM05D000053 ORTHO05D000001 1.0e-09 69.3 135 37.0
Medtr8g077105 Medicago truncatula HOM05D000311 ORTHO05D000183 1.3e-09 68.9 148 31.8
Nn8g39655 Nelumbo nucifera HOM05D000311 ORTHO05D000183 1.3e-09 68.9 264 29.2
BraA04t17560Z Brassica rapa HOM05D000311 ORTHO05D000183 2.2e-09 68.2 119 36.1
Glyma.12G233700 Glycine max HOM05D000311 ORTHO05D000183 2.2e-09 68.2 457 38.5
QL05p085204 Quercus lobata HOM05D000311 ORTHO05D000183 2.2e-09 68.2 177 28.8
Gorai.005G082100 Gossypium raimondii HOM05D000311 ORTHO05D000183 5.0e-09 67.0 186 31.2
TAR375G0143 Trochodendron aralioides HOM05D000311 ORTHO05D000183 5.0e-09 67.0 149 30.9
Gohir.D13G208066 Gossypium hirsutum HOM05D000311 ORTHO05D000183 6.5e-09 66.6 191 32.5
Gohir.D02G072850 Gossypium hirsutum HOM05D000311 ORTHO05D000183 1.1e-08 65.9 186 30.6
Carub.0002s0936 Capsella rubella HOM05D000311 ORTHO05D000183 1.4e-08 65.5 247 32.4
Gorai.004G051800 Gossypium raimondii HOM05D000311 ORTHO05D000183 1.9e-08 65.1 283 27.6
Gorai.012G068800 Gossypium raimondii HOM05D000311 ORTHO05D000183 1.9e-08 65.1 112 38.4
MBI14_g38255_MAGBIO Magnolia biondii HOM05D000053 ORTHO05D011302 1.9e-08 65.1 138 32.6
BolC8t52731H Brassica oleracea HOM05D000053 ORTHO05D000035 2.5e-08 64.7 184 31.0
QL05p085350 Quercus lobata HOM05D000311 ORTHO05D000183 2.5e-08 64.7 115 33.0
ATR0598G314 Amborella trichopoda HOM05D000311 ORTHO05D012563 3.2e-08 64.3 183 28.4
Gohir.D10G124900 Gossypium hirsutum HOM05D000311 ORTHO05D000183 4.2e-08 63.9 167 29.9
Gorai.011G138000 Gossypium raimondii HOM05D000311 ORTHO05D000183 4.2e-08 63.9 167 29.9
GSVIVG01017419001 Vitis vinifera HOM05D000311 ORTHO05D000183 4.2e-08 63.9 115 33.0
AL1G64890 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 5.5e-08 63.5 278 24.8
Duzib212G0774 Durio zibethinus HOM05D000311 ORTHO05D000183 1.2e-07 62.4 80 46.2
Nn5g28557 Nelumbo nucifera HOM05D000311 ORTHO05D000183 1.2e-07 62.4 188 35.1
PGR064G0008 Punica granatum HOM05D000311 ORTHO05D000183 1.2e-07 62.4 255 33.3
GSVIVG01017404001 Vitis vinifera HOM05D000311 ORTHO05D000183 1.2e-07 62.4 273 25.6
C03p52210 Brassica napus HOM05D000053 ORTHO05D000035 1.6e-07 62.0 175 26.3
Duzib212G0440 Durio zibethinus HOM05D000311 ORTHO05D000183 2.1e-07 61.6 103 36.9
BcaC01g03567 Brassica carinata HOM05D000053 ORTHO05D000035 2.7e-07 61.2 166 29.5
Carub.0004s0515 Capsella rubella HOM05D000311 ORTHO05D000183 3.6e-07 60.8 119 33.6
COL.COLO4_11857 Corchorus olitorius HOM05D000311 ORTHO05D000183 3.6e-07 60.8 259 32.4
Gorai.010G071900 Gossypium raimondii HOM05D000311 ORTHO05D000183 3.6e-07 60.8 155 29.7
PGR064G0010 Punica granatum HOM05D000311 ORTHO05D000183 3.6e-07 60.8 148 29.1
arahy.Tifrunner.gnm1.ann1.VZ4XCB Arachis hypogaea HOM05D000311 ORTHO05D000183 4.7e-07 60.5 75 42.7
CARHR067380 Cardamine hirsuta HOM05D000311 ORTHO05D000183 4.7e-07 60.5 115 34.8
Carub.0004s0334 Capsella rubella HOM05D000053 ORTHO05D000035 6.1e-07 60.1 156 33.3
Dinv19809 Davidia involucrata HOM05D000311 ORTHO05D000183 6.1e-07 60.1 106 34.9
Gohir.A13G202300 Gossypium hirsutum HOM05D000311 ORTHO05D000183 6.1e-07 60.1 175 33.7
arahy.Tifrunner.gnm1.ann1.7X7550 Arachis hypogaea HOM05D000311 ORTHO05D000183 7.9e-07 59.7 76 43.4
Gorai.007G339200 Gossypium raimondii HOM05D000071 ORTHO05D000029 7.9e-07 59.7 214 28.5
vmacro08142 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 7.9e-07 59.7 125 29.6
VMungo0331G1986 Vigna mungo HOM05D000311 ORTHO05D000183 7.9e-07 59.7 178 28.1
VMungo1215G2225 Vigna mungo HOM05D000021 ORTHO05D000010 7.9e-07 59.7 121 31.4
Actinidia33174 Actinidia chinensis HOM05D000071 ORTHO05D000029 1.0e-06 59.3 191 28.8
Hma1.2p1_0609F.1_g188370 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 1.0e-06 59.3 143 30.1
Medtr0087s0070 Medicago truncatula HOM05D000071 ORTHO05D000029 1.0e-06 59.3 160 26.9
Oeu029749.1 Olea europaea HOM05D000311 ORTHO05D000183 1.0e-06 59.3 192 28.1
Peaxi162Scf00152g01341 Petunia axillaris HOM05D000311 ORTHO05D000183 1.0e-06 59.3 133 33.1
Prupe.1G575300 Prunus persica HOM05D000071 ORTHO05D000029 1.0e-06 59.3 202 27.2
Sabra11G0082900 Salix brachista HOM05D000021 ORTHO05D000010 1.0e-06 59.3 165 27.9
CAN.G538.9 Capsicum annuum HOM05D000021 ORTHO05D000010 1.4e-06 58.9 156 28.2
Gohir.D11G308225 Gossypium hirsutum HOM05D000071 ORTHO05D000029 1.4e-06 58.9 214 28.5
Nitab4.5_0002569g0050 Nicotiana tabacum HOM05D000311 ORTHO05D000183 1.4e-06 58.9 106 36.8
BolC3t13452H Brassica oleracea HOM05D000311 ORTHO05D000183 1.8e-06 58.5 146 32.2
Carub.0004s0335 Capsella rubella HOM05D000053 ORTHO05D000035 1.8e-06 58.5 156 32.7
Eucgr.E04263 Eucalyptus grandis HOM05D000311 ORTHO05D000183 1.8e-06 58.5 257 25.3
Gorai.007G337100 Gossypium raimondii HOM05D000071 ORTHO05D000029 1.8e-06 58.5 177 26.0
Gorai.009G367600 Gossypium raimondii HOM05D000053 ORTHO05D000035 1.8e-06 58.5 183 27.9
PGR064G0015 Punica granatum HOM05D000311 ORTHO05D000183 1.8e-06 58.5 255 32.9
ATR0564G122 Amborella trichopoda HOM05D016351 ORTHO05D012563 2.3e-06 58.2 119 33.6
Medtr2g069880 Medicago truncatula HOM05D000071 ORTHO05D000029 2.3e-06 58.2 174 29.3
Thecc.02G158500 Theobroma cacao HOM05D000311 ORTHO05D000183 2.3e-06 58.2 123 31.7
HanXRQChr04g0097451 Helianthus annuus HOM05D000311 ORTHO05D000183 3.0e-06 57.8 117 30.8
Nitab4.5_0009518g0030 Nicotiana tabacum HOM05D000311 ORTHO05D000183 3.0e-06 57.8 191 33.5
BolC3t17501H Brassica oleracea HOM05D000053 ORTHO05D000035 3.9e-06 57.4 182 25.3
Ciclev10017648m.g Citrus clementina HOM05D000053 ORTHO05D000035 3.9e-06 57.4 322 23.6
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 3.9e-06 57.4 160 30.0
THA.LOC104813299 Tarenaya hassleriana HOM05D000053 ORTHO05D000035 3.9e-06 57.4 252 26.6
arahy.Tifrunner.gnm1.ann1.PC6LAR Arachis hypogaea HOM05D000311 ORTHO05D000183 5.1e-06 57.0 76 43.4
CAN.G222.17 Capsicum annuum HOM05D000311 ORTHO05D000183 5.1e-06 57.0 153 32.7
Cfa012490 Carpinus fangiana HOM05D000311 ORTHO05D000183 5.1e-06 57.0 215 27.0
Lsat_1_v5_gn_1_29681 Lactuca sativa HOM05D000311 ORTHO05D000183 5.1e-06 57.0 204 27.9
Lj2g0024572 Lotus japonicus HOM05D000071 ORTHO05D000029 5.1e-06 57.0 199 30.7
GSVIVG01028817001 Vitis vinifera HOM05D000071 ORTHO05D000029 5.1e-06 57.0 265 27.2
ATR0607G002 Amborella trichopoda HOM05D000311 ORTHO05D000183 6.7e-06 56.6 119 32.8
Ciclev10018200m.g Citrus clementina HOM05D000053 ORTHO05D000035 6.7e-06 56.6 206 28.6
Duzib212G0223 Durio zibethinus HOM05D000311 ORTHO05D000183 6.7e-06 56.6 80 41.2
Gohir.D05G380800 Gossypium hirsutum HOM05D000053 ORTHO05D000035 6.7e-06 56.6 180 27.8
Gohir.D13G207900 Gossypium hirsutum HOM05D000311 ORTHO05D000183 6.7e-06 56.6 193 28.0
Nn5g28521 Nelumbo nucifera HOM05D000311 ORTHO05D000183 6.7e-06 56.6 188 34.6
Solyc08g016270.3 Solanum lycopersicum HOM05D000311 ORTHO05D000183 6.7e-06 56.6 160 33.8
Thecc.05G011400 Theobroma cacao HOM05D000053 ORTHO05D000448 6.7e-06 56.6 184 29.3
TPR.G29147 Trifolium pratense HOM05D000071 ORTHO05D000029 6.7e-06 56.6 255 27.1
TWI34G1669 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 6.7e-06 56.6 120 39.2
TAR628G0245 Trochodendron aralioides HOM05D000033 ORTHO05D001614 6.7e-06 56.6 169 30.2
arahy.Tifrunner.gnm1.ann1.IS23K0 Arachis hypogaea HOM05D000311 ORTHO05D000183 8.8e-06 56.2 76 42.1
BcaB01g05211 Brassica carinata HOM05D001733 ORTHO05D000183 8.8e-06 56.2 115 33.9
CiPaw.06G133000 Carya illinoinensis HOM05D000311 ORTHO05D000183 8.8e-06 56.2 149 34.9
Dinv02377 Davidia involucrata HOM05D000071 ORTHO05D000029 8.8e-06 56.2 134 30.6
Gohir.A05G351000 Gossypium hirsutum HOM05D000311 ORTHO05D000183 8.8e-06 56.2 61 45.9
Gohir.D05G381500 Gossypium hirsutum HOM05D000053 ORTHO05D000035 8.8e-06 56.2 183 26.8
PGR119G0542 Punica granatum HOM05D000311 ORTHO05D000183 8.8e-06 56.2 259 34.0
QL93p2015_0025 Quercus lobata HOM05D000311 ORTHO05D000183 8.8e-06 56.2 165 26.7
PGSC0003DMG400015687 Solanum tuberosum HOM05D000311 ORTHO05D000183 8.8e-06 56.2 256 25.4
Thecc.05G011000 Theobroma cacao HOM05D000053 ORTHO05D000448 8.8e-06 56.2 196 29.6
Thecc.06G013900 Theobroma cacao HOM05D000311 ORTHO05D000183 8.8e-06 56.2 98 34.7


User provided reference genes

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