Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 2.6e-247 858.2 421 100.0
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 1.5e-213 746.1 377 97.1
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 9.7e-210 733.4 368 97.8
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 3.6e-196 688.3 343 98.5
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 3.1e-179 632.1 343 87.5
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 8.9e-179 630.6 372 79.8
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 1.2e-178 630.2 369 79.9
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 9.8e-178 627.1 347 86.5
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 9.8e-178 627.1 345 86.4
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 8.3e-177 624.0 369 79.9
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 2.4e-176 622.5 347 85.9
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 2.4e-176 622.5 365 82.7
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 9.2e-176 620.5 372 77.7
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 1.2e-175 620.2 342 86.0
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 1.2e-175 620.2 372 78.0
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.6e-175 619.8 366 79.5
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 1.6e-175 619.8 342 86.3
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 7.8e-175 617.5 345 84.1
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 7.8e-175 617.5 366 79.0
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 1.0e-174 617.1 369 79.9
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 1.3e-174 616.7 347 83.9
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 3.9e-174 615.1 374 77.5
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 3.9e-174 615.1 372 76.9
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 1.9e-173 612.8 356 80.3
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 1.9e-173 612.8 345 83.8
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 4.3e-173 611.7 367 78.2
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 7.3e-173 610.9 365 78.9
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 9.5e-173 610.5 373 77.2
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 1.2e-172 610.1 367 77.1
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 1.6e-172 609.8 345 83.8
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 2.1e-172 609.4 345 83.2
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 2.8e-172 609.0 372 76.9
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 3.6e-172 608.6 372 76.3
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 4.7e-172 608.2 374 76.2
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 1.1e-171 607.1 366 78.4
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 1.8e-171 606.3 373 76.7
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 4.0e-171 605.1 352 81.5
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 6.8e-171 604.4 367 76.6
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 8.9e-171 604.0 344 82.0
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 1.2e-170 603.6 363 77.7
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 1.5e-170 603.2 351 80.1
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 2.0e-170 602.8 362 78.2
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 2.6e-170 602.4 371 76.3
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 2.6e-170 602.4 342 81.6
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 3.4e-170 602.1 368 75.5
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 3.4e-170 602.1 342 82.2
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 3.4e-170 602.1 342 81.6
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 4.4e-170 601.7 341 83.0
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 9.9e-170 600.5 372 76.6
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 9.9e-170 600.5 350 80.0
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 9.9e-170 600.5 342 82.7
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 1.3e-169 600.1 341 83.9
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 1.7e-169 599.7 367 76.8
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 1.7e-169 599.7 370 77.8
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 2.2e-169 599.4 347 81.0
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 2.9e-169 599.0 369 75.9
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 2.9e-169 599.0 372 75.3
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 3.7e-169 598.6 382 75.1
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 6.4e-169 597.8 344 82.0
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 1.2e-167 593.6 380 73.7
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 2.1e-167 592.8 350 78.9
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 2.7e-167 592.4 343 80.8
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 2.7e-167 592.4 344 79.7
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 2.7e-167 592.4 349 78.5
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.0e-166 590.5 361 78.9
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.0e-166 590.5 361 78.9
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 1.3e-166 590.1 343 81.9
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 2.3e-166 589.3 374 75.1
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 3.9e-166 588.6 360 79.2
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 6.6e-166 587.8 341 80.9
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 1.5e-165 586.6 350 78.3
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 1.9e-165 586.3 344 80.2
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 5.6e-165 584.7 365 75.9
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 2.1e-164 582.8 341 80.1
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 2.8e-164 582.4 342 80.1
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.8e-164 582.4 344 79.1
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 3.6e-164 582.0 359 77.7
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 4.7e-164 581.6 341 80.1
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 8.1e-164 580.9 341 79.5
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 1.4e-163 580.1 341 78.6
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 6.8e-163 577.8 357 77.6
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 6.8e-163 577.8 347 77.2
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 1.5e-162 576.6 344 77.9
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 1.5e-162 576.6 344 78.2
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 2.0e-162 576.2 340 79.7
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 3.4e-162 575.5 358 76.0
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 5.8e-162 574.7 362 76.2
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 7.6e-162 574.3 343 77.8
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 1.7e-161 573.2 342 79.5
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 3.8e-161 572.0 376 74.2
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 3.5e-159 565.5 341 78.3
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 1.3e-158 563.5 345 78.3
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 1.7e-158 563.1 341 76.8
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.7e-158 563.1 406 68.0
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 3.0e-158 562.4 373 74.3
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 5.1e-158 561.6 347 76.7
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 7.3e-157 557.8 310 86.5
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 1.8e-155 553.1 340 76.8
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 5.8e-154 548.1 467 61.0
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 2.4e-152 542.7 357 73.1
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 4.2e-152 542.0 381 68.8
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 4.3e-149 531.9 341 73.9
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 5.6e-149 531.6 447 61.1
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 1.4e-147 526.9 357 71.7
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 3.2e-144 515.8 343 73.8
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 1.6e-140 503.4 342 69.6
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 1.5e-138 496.9 341 70.7
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 9.9e-138 494.2 342 71.1
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 2.9e-129 466.1 271 81.2
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 3.9e-126 455.7 353 62.3
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 1.3e-124 450.7 369 61.5
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 9.0e-123 444.5 255 80.8
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.9e-118 429.1 255 78.4
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 6.7e-118 428.3 341 60.7
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 3.7e-116 422.5 404 55.9
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 1.7e-113 413.7 309 68.3
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 3.8e-113 412.5 309 68.0
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 8.5e-113 411.4 231 81.0
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 3.7e-108 396.0 341 57.2
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 1.8e-107 393.7 228 80.3
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 7.4e-101 371.7 349 56.7
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 8.2e-100 368.2 245 71.8
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 5.3e-99 365.5 351 57.0
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 1.4e-94 350.9 355 51.3
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 1.5e-93 347.4 254 68.9
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 7.5e-93 345.1 214 75.7
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 6.3e-92 342.0 341 50.4
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 4.0e-86 322.8 193 78.8
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 2.4e-75 287.0 170 78.8
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 5.4e-75 285.8 220 66.8
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 9.5e-64 248.4 157 75.8
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 1.2e-58 231.5 137 80.3
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 8.6e-49 198.7 340 37.9
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 4.3e-48 196.4 112 79.5
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 6.2e-47 192.6 112 78.6
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 1.3e-41 174.9 94 87.2
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 2.3e-41 174.1 99 81.8
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 3.1e-38 163.7 248 41.9
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 7.6e-37 159.1 327 34.9
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 6.7e-25 119.4 81 76.5
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.1e-22 112.1 95 57.9
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 2.4e-22 110.9 87 67.8
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 1.2e-21 108.6 255 32.9
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 6.4e-20 102.8 169 40.8
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 1.4e-14 85.1 45 88.9
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 6.0e-10 69.7 47 68.1


User provided reference genes

Program Settings