Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RD0JM0 Arachis hypogaea HOM05D004236 ORTHO05D004903 2.3e-63 245.4 120 100.0
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 5.3e-28 127.9 68 89.7
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 5.3e-28 127.9 68 89.7
arahy.Tifrunner.gnm1.ann1.2X7NJS Arachis hypogaea HOM05D004236 ORTHO05D004903 1.7e-26 122.9 82 74.4
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 2.2e-26 122.5 68 80.9
arahy.Tifrunner.gnm1.ann1.YBT00D Arachis hypogaea HOM05D004236 ORTHO05D019770 3.8e-26 121.7 85 74.1
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 6.5e-26 120.9 68 82.4
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 6.5e-26 120.9 68 82.4
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 3.2e-25 118.6 68 79.4
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 1.2e-24 116.7 68 82.4
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 1.2e-24 116.7 68 77.9
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 8.0e-24 114.0 68 79.4
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 1.0e-23 113.6 68 77.9
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 1.0e-23 113.6 68 75.0
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 1.0e-23 113.6 68 79.4
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 1.8e-23 112.8 68 77.9
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 1.2e-22 110.2 68 72.1
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 3.3e-22 108.6 70 72.9
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 3.3e-22 108.6 68 67.6
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 9.7e-22 107.1 68 70.6
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 9.7e-22 107.1 68 69.1
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 1.7e-21 106.3 72 66.7
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 2.8e-21 105.5 68 67.6
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 2.8e-21 105.5 72 68.1
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 3.7e-21 105.1 68 69.1
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 3.7e-21 105.1 68 67.6
Dinv33978 Davidia involucrata HOM05D004236 ORTHO05D004903 4.8e-21 104.8 68 70.6
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 4.8e-21 104.8 68 70.6
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 6.3e-21 104.4 68 69.1
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 8.3e-21 104.0 68 72.1
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 1.1e-20 103.6 68 66.2
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 2.4e-20 102.4 68 67.6
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 3.1e-20 102.1 68 67.6
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 3.1e-20 102.1 68 69.1
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 3.1e-20 102.1 72 66.7
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 4.1e-20 101.7 68 70.6
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 5.3e-20 101.3 68 69.1
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 7.0e-20 100.9 68 69.1
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 7.0e-20 100.9 68 69.1
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 7.0e-20 100.9 68 72.1
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 9.1e-20 100.5 68 66.2
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 1.6e-19 99.8 72 66.7
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 2.0e-19 99.4 68 66.2
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 2.7e-19 99.0 68 66.2
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 2.7e-19 99.0 68 66.2
Sabra15G0087400 Salix brachista HOM05D004236 ORTHO05D004903 2.7e-19 99.0 78 60.3
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 3.5e-19 98.6 68 69.1
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 1.3e-18 96.7 68 64.7
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.7e-18 96.3 72 62.5
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 1.7e-18 96.3 72 62.5
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 2.9e-18 95.5 68 64.7
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 2.9e-18 95.5 72 62.5
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 5.0e-18 94.7 72 61.1
Nitab4.5_0002456g0050 Nicotiana tabacum HOM05D004236 ORTHO05D004903 5.0e-18 94.7 68 64.7
Actinidia17648 Actinidia chinensis HOM05D004236 ORTHO05D004903 1.1e-17 93.6 68 66.2
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 1.5e-17 93.2 68 66.2
CsaV3_3G017790 Cucumis sativus L. HOM05D004236 ORTHO05D004903 1.9e-17 92.8 68 63.2
Nitab4.5_0005700g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.9e-17 92.8 68 63.2
THA.LOC104822473 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 1.9e-17 92.8 68 64.7
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 2.5e-17 92.4 72 59.7
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 2.5e-17 92.4 72 59.7
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 3.2e-17 92.0 72 61.1
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 3.2e-17 92.0 69 62.3
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 3.2e-17 92.0 68 60.3
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 3.2e-17 92.0 68 63.2
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 4.2e-17 91.7 68 63.2
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 5.5e-17 91.3 68 58.8
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 5.5e-17 91.3 68 61.8
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 5.5e-17 91.3 68 63.2
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 9.4e-17 90.5 68 61.8
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 9.4e-17 90.5 72 61.1
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 1.6e-16 89.7 70 65.7
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 1.6e-16 89.7 68 63.2
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 1.6e-16 89.7 68 61.8
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 2.1e-16 89.4 68 57.4
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 2.1e-16 89.4 73 57.5
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 2.7e-16 89.0 68 60.3
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 4.7e-16 88.2 68 58.8
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 6.1e-16 87.8 68 63.2
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 6.1e-16 87.8 68 57.4
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 6.1e-16 87.8 68 60.3
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 8.0e-16 87.4 71 62.0
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 1.0e-15 87.0 68 60.3
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 1.0e-15 87.0 80 56.2
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 1.8e-15 86.3 78 57.7
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 1.8e-15 86.3 68 61.8
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 2.3e-15 85.9 68 63.2
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 3.0e-15 85.5 68 57.4
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 3.0e-15 85.5 68 55.9
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 3.0e-15 85.5 68 58.8
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 4.0e-15 85.1 68 55.9
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 4.0e-15 85.1 67 61.2
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 5.2e-15 84.7 68 55.9
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 5.2e-15 84.7 68 55.9
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 5.2e-15 84.7 69 58.0
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 6.8e-15 84.3 68 54.4
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 6.8e-15 84.3 68 54.4
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 6.8e-15 84.3 68 60.3
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 6.8e-15 84.3 71 62.0
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 8.8e-15 84.0 68 55.9
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 1.2e-14 83.6 68 58.8
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 1.2e-14 83.6 68 60.3
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 1.5e-14 83.2 72 58.3
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 1.5e-14 83.2 68 55.9
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 1.5e-14 83.2 68 60.3
MBI10_g41074_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 2.0e-14 82.8 68 55.9
Solyc03g034415.1 Solanum lycopersicum HOM05D004236 ORTHO05D004903 2.0e-14 82.8 68 58.8
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 1.3e-13 80.1 70 54.3
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 2.2e-13 79.3 70 54.3
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 2.8e-13 79.0 73 50.7
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 3.7e-13 78.6 74 52.7
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 6.3e-13 77.8 72 51.4
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 1.4e-12 76.6 68 55.9
Sc11g0008520 Simmondsia chinensis HOM05D004236 ORTHO05D004903 1.4e-12 76.6 69 53.6
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 1.8e-12 76.3 68 55.9
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 1.8e-12 76.3 68 55.9
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 1.8e-12 76.3 68 55.9
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 1.8e-12 76.3 68 55.9
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 1.8e-12 76.3 68 55.9
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 1.8e-12 76.3 68 51.5
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 3.1e-12 75.5 72 52.8
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 1.2e-11 73.6 66 57.6
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 1.6e-11 73.2 69 47.8
SHI07808 Sapria himalayana HOM05D004236 ORTHO05D004903 2.0e-11 72.8 68 52.9
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 2.7e-11 72.4 68 52.9
Lsat_1_v5_gn_0_260 Lactuca sativa HOM05D004236 ORTHO05D004903 3.5e-11 72.0 67 58.2
Lsat_1_v5_gn_0_31400 Lactuca sativa HOM05D004236 ORTHO05D004903 3.5e-11 72.0 67 58.2
Lsat_1_v5_gn_3_124540 Lactuca sativa HOM05D004236 ORTHO05D004903 3.5e-11 72.0 67 58.2
Lsat_1_v5_gn_3_86660 Lactuca sativa HOM05D004236 ORTHO05D004903 3.5e-11 72.0 67 58.2
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 1.0e-10 70.5 68 52.9
Lsat_1_v5_gn_2_36660 Lactuca sativa HOM05D004236 ORTHO05D004903 1.0e-10 70.5 66 57.6
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 6.6e-10 67.8 68 50.0
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 3.3e-09 65.5 68 51.5
SEGI_28739 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 3.0e-07 58.9 71 45.1
Pp3c15_25630 Physcomitrium patens HOM05D004236 ORTHO05D004903 6.8e-07 57.8 76 40.8
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 5.7e-06 54.7 77 42.9


User provided reference genes

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