Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RC1IE0 Arachis hypogaea HOM05D006993 ORTHO05D008336 1.4e-98 363.2 219 100.0
Medtr8g028100 Medicago truncatula HOM05D006993 ORTHO05D008336 5.3e-74 281.6 220 72.3
TPR.G5057 Trifolium pratense HOM05D006993 ORTHO05D008336 2.0e-73 279.6 220 71.8
VMungo0331G1491 Vigna mungo HOM05D006993 ORTHO05D008336 9.3e-71 270.8 224 80.8
Ca_23580_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 1.8e-69 266.5 220 80.0
Phvul.010G110000 Phaseolus vulgaris HOM05D006993 ORTHO05D008336 1.8e-69 266.5 218 80.3
Lj3g0006688 Lotus japonicus HOM05D006993 ORTHO05D008336 3.9e-69 265.4 222 73.9
Glyma.16G028500 Glycine max HOM05D006993 ORTHO05D008336 2.5e-68 262.7 221 81.4
Glyma.07G059600 Glycine max HOM05D006993 ORTHO05D008336 2.8e-67 259.2 224 77.2
Lalb_Chr17g0342261 Lupinus albus HOM05D006993 ORTHO05D008336 2.9e-64 249.2 223 65.5
arahy.Tifrunner.gnm1.ann1.6DX8AG Arachis hypogaea HOM05D006993 ORTHO05D008336 1.1e-50 204.1 219 58.0
Nitab4.5_0009028g0040 Nicotiana tabacum HOM05D006993 ORTHO05D008336 5.3e-50 201.8 219 60.7
GSVIVG01006115001 Vitis vinifera HOM05D006993 ORTHO05D008336 2.0e-49 199.9 166 66.3
TAR626G0971 Trochodendron aralioides HOM05D006993 ORTHO05D008336 1.0e-48 197.6 157 67.5
CSS0002802 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 3.8e-48 195.7 218 64.2
PGR083G2302 Punica granatum HOM05D006993 ORTHO05D008336 3.8e-48 195.7 199 70.4
QL09p044784 Quercus lobata HOM05D006993 ORTHO05D008336 5.0e-48 195.3 190 61.1
Potri.014G172800 Populus trichocarpa HOM05D006993 ORTHO05D008336 8.5e-48 194.5 210 57.6
Sed0005772 Sechium edule HOM05D006993 ORTHO05D008336 1.1e-47 194.1 176 59.7
Ciclev10016771m.g Citrus clementina HOM05D006993 ORTHO05D008336 1.9e-47 193.4 215 62.3
MELO3C012348.2 Cucumis melo HOM05D006993 ORTHO05D008336 2.5e-47 193.0 176 59.7
CSS0028614 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 5.5e-47 191.8 218 64.2
CsaV3_5G035360 Cucumis sativus L. HOM05D006993 ORTHO05D008336 5.5e-47 191.8 176 58.5
Manes.13G058300 Manihot esculenta HOM05D006993 ORTHO05D008336 5.5e-47 191.8 213 54.9
Nn1g08444 Nelumbo nucifera HOM05D006993 ORTHO05D008336 5.5e-47 191.8 156 75.6
Sopen09g012650 Solanum pennellii HOM05D006993 ORTHO05D008336 9.4e-47 191.0 190 63.2
Oeu013422.3 Olea europaea HOM05D006993 ORTHO05D008336 1.6e-46 190.3 212 55.2
Gohir.A11G146100 Gossypium hirsutum HOM05D006993 ORTHO05D008336 2.1e-46 189.9 218 56.0
Gorai.007G162900 Gossypium raimondii HOM05D006993 ORTHO05D008336 2.1e-46 189.9 218 56.0
PGSC0003DMG400020288 Solanum tuberosum HOM05D006993 ORTHO05D008336 2.1e-46 189.9 199 65.8
Atru.chr6.3467 Acer truncatum HOM05D006993 ORTHO05D008336 2.7e-46 189.5 222 59.5
Peaxi162Scf12724g00016 Petunia axillaris HOM05D006993 ORTHO05D008336 2.7e-46 189.5 225 59.6
Cfa010616 Carpinus fangiana HOM05D006993 ORTHO05D008336 4.6e-46 188.7 159 71.1
Solyc09g018890.3 Solanum lycopersicum HOM05D006993 ORTHO05D008336 4.6e-46 188.7 190 58.4
CiPaw.13G058900 Carya illinoinensis HOM05D006993 ORTHO05D008336 6.1e-46 188.3 222 58.1
ATR0751G064 Amborella trichopoda HOM05D006993 ORTHO05D008336 1.0e-45 187.6 160 61.9
Lsat_1_v5_gn_9_15700 Lactuca sativa HOM05D006993 ORTHO05D008336 1.0e-45 187.6 192 56.2
Aqoxy4G02329 Aquilegia oxysepala HOM05D006993 ORTHO05D008336 1.8e-45 186.8 160 67.5
MSTRG.18520 Avicennia marina HOM05D006993 ORTHO05D008336 1.8e-45 186.8 163 62.0
Duzib211G0651 Durio zibethinus HOM05D006993 ORTHO05D008336 2.3e-45 186.4 185 58.9
FvH4_5g27060 Fragaria vesca HOM05D006993 ORTHO05D008336 2.3e-45 186.4 185 61.6
FAN08G3673 Fragaria x ananassa HOM05D006993 ORTHO05D008336 2.3e-45 186.4 172 63.4
Thecc.01G203600 Theobroma cacao HOM05D006993 ORTHO05D008336 3.0e-45 186.0 233 53.6
Duzib138G1606 Durio zibethinus HOM05D006993 ORTHO05D008336 3.9e-45 185.7 223 58.3
Eucgr.H00675 Eucalyptus grandis HOM05D006993 ORTHO05D008336 3.9e-45 185.7 220 62.3
Psat4g158880 Pisum sativum HOM05D006993 ORTHO05D008336 3.9e-45 185.7 170 66.5
Prupe.5G011000 Prunus persica HOM05D006993 ORTHO05D008336 3.9e-45 185.7 170 61.8
PSO541G2665 Papaver somniferum HOM05D006993 ORTHO05D008336 8.8e-45 184.5 163 60.1
Sabra14G0132300 Salix brachista HOM05D006993 ORTHO05D008336 1.1e-44 184.1 210 57.1
TWI18G0796 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 1.1e-44 184.1 219 57.5
COL.COLO4_19719 Corchorus olitorius HOM05D006993 ORTHO05D008336 1.5e-44 183.7 222 59.5
Oeu049571.1 Olea europaea HOM05D006993 ORTHO05D008336 1.5e-44 183.7 212 61.3
Cpa.g.sc8.8 Carica papaya HOM05D006993 ORTHO05D008336 2.6e-44 183.0 215 56.3
ECA247G3631 Erigeron canadensis HOM05D006993 ORTHO05D008336 5.7e-44 181.8 200 58.0
CAN.G3.14 Capsicum annuum HOM05D006993 ORTHO05D008336 7.4e-44 181.4 211 60.2
FAN18G3928 Fragaria x ananassa HOM05D006993 ORTHO05D008336 7.4e-44 181.4 167 62.3
MD00G1144800 Malus domestica HOM05D006993 ORTHO05D008336 7.4e-44 181.4 194 55.7
PSO675G6922 Papaver somniferum HOM05D006993 ORTHO05D008336 7.4e-44 181.4 191 53.9
CDE03G0427 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 9.7e-44 181.0 170 61.2
BcaB06g26751 Brassica carinata HOM05D006993 ORTHO05D008336 4.8e-43 178.7 215 58.6
CANSAT11G1969 Cannabis sativa HOM05D006993 ORTHO05D008336 4.8e-43 178.7 218 50.9
FAN04G3061 Fragaria x ananassa HOM05D006993 ORTHO05D008336 6.3e-43 178.3 113 80.5
DCAR_018599 Daucus carota HOM05D000190 ORTHO05D008336 1.1e-42 177.6 160 67.5
Migut.D00756 Erythranthe guttata HOM05D006993 ORTHO05D008336 1.1e-42 177.6 195 54.4
Thhalv10002670m.g Eutrema salsugineum HOM05D006993 ORTHO05D008336 1.1e-42 177.6 214 51.4
MD15G1141400 Malus domestica HOM05D006993 ORTHO05D008336 1.1e-42 177.6 110 78.2
AT2G04039 Arabidopsis thaliana HOM05D006993 ORTHO05D008336 1.4e-42 177.2 214 50.0
A07p06910 Brassica napus HOM05D006993 ORTHO05D008336 1.4e-42 177.2 180 57.2
BraA07t28482Z Brassica rapa HOM05D006993 ORTHO05D008336 1.4e-42 177.2 180 57.2
Lj2A1109T68 Lonicera japonica HOM05D006993 ORTHO05D008336 1.4e-42 177.2 113 74.3
FAN13G2105 Fragaria x ananassa HOM05D006993 ORTHO05D008336 1.8e-42 176.8 179 67.0
BcaC06g35821 Brassica carinata HOM05D006993 ORTHO05D008336 2.4e-42 176.4 180 57.2
BolC7t41517H Brassica oleracea HOM05D006993 ORTHO05D008336 2.4e-42 176.4 180 57.2
AL3G41710 Arabidopsis lyrata HOM05D006993 ORTHO05D008336 4.1e-42 175.6 214 51.9
Ca_23571_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 4.1e-42 175.6 169 78.7
Gorai.N000700 Gossypium raimondii HOM05D006993 ORTHO05D008336 4.1e-42 175.6 156 60.9
CDE06G2320 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 6.9e-42 174.9 211 54.0
Gohir.D07G168900 Gossypium hirsutum HOM05D006993 ORTHO05D008336 6.9e-42 174.9 204 55.4
Actinidia23138 Actinidia chinensis HOM05D006993 ORTHO05D008336 1.2e-41 174.1 215 53.5
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 1.2e-41 174.1 155 74.2
C07p10500 Brassica napus HOM05D006993 ORTHO05D008336 2.0e-41 173.3 193 54.4
CSS0020795 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 3.4e-41 172.6 200 53.0
Cc01_g15720 Coffea canephora HOM05D006993 ORTHO05D008336 3.4e-41 172.6 208 58.2
MBI15_g35689_MAGBIO Magnolia biondii HOM05D006993 ORTHO05D008336 5.9e-41 171.8 113 73.5
AUR62028621 Chenopodium quinoa HOM05D006993 ORTHO05D008336 7.7e-41 171.4 199 58.8
HanXRQChr08g0230791 Helianthus annuus HOM05D006993 ORTHO05D008336 7.7e-41 171.4 182 53.3
SalBow2G0576 Salvia bowleyana HOM05D006993 ORTHO05D008336 1.7e-40 170.2 112 73.2
vmacro02850 Vaccinium macrocarpon HOM05D006993 ORTHO05D008336 1.7e-40 170.2 202 51.5
RcHm_v2.0_Chr7g0218061 Rosa chinensis HOM05D006993 ORTHO05D008336 2.9e-40 169.5 212 58.5
Sp3g23040 Schrenkiella parvula HOM05D006993 ORTHO05D008336 2.9e-40 169.5 184 65.8
Aa31sc249G30 Aethionema arabicum HOM05D006993 ORTHO05D008336 3.8e-40 169.1 215 49.3
Zm00001eb327210 Zea mays HOM05D006993 ORTHO05D008336 3.8e-40 169.1 172 58.1
CSS0001652 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 5.0e-40 168.7 200 54.5
CARHR101970 Cardamine hirsuta HOM05D006993 ORTHO05D008336 6.5e-40 168.3 113 72.6
AUR62008046 Chenopodium quinoa HOM05D006993 ORTHO05D008336 1.1e-39 167.5 197 58.9
Duzib133G0497 Durio zibethinus HOM05D006993 ORTHO05D008336 2.5e-39 166.4 108 77.8
EL10Ac5g10566 Beta vulgaris HOM05D006993 ORTHO05D008336 3.2e-39 166.0 199 58.8
Zm00001eb108910 Zea mays HOM05D006993 ORTHO05D008336 3.2e-39 166.0 174 50.0
Potri.002G217400 Populus trichocarpa HOM05D006993 ORTHO05D008336 4.2e-39 165.6 211 55.9
unitig_736.g22974 Utricularia gibba HOM05D006993 ORTHO05D008336 2.1e-38 163.3 110 72.7
Carub.0003s2586 Capsella rubella HOM05D006993 ORTHO05D008336 6.7e-37 158.3 106 75.5
Os07g0607800 Oryza sativa ssp. japonica HOM05D006993 ORTHO05D008336 6.3e-35 151.8 106 64.2
SalBow2G2967 Salvia bowleyana HOM05D006993 ORTHO05D008336 2.4e-34 149.8 181 54.7
SalBow6G6587 Salvia bowleyana HOM05D006993 ORTHO05D008336 4.1e-34 149.1 101 72.3
Gohir.A07G162350 Gossypium hirsutum HOM05D006993 ORTHO05D008336 3.5e-33 146.0 196 50.5
Nitab4.5_0005967g0020 Nicotiana tabacum HOM05D006993 ORTHO05D008336 5.9e-33 145.2 215 51.6
Ah.11g050660 Amaranthus hybridus HOM05D006993 ORTHO05D008336 1.7e-32 143.7 227 47.1
TWI36G0749 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 1.6e-30 137.1 113 62.8
ClCG05G021810 Citrullus lanatus HOM05D006993 ORTHO05D008336 6.7e-29 131.7 112 60.7
AagrBONN_evm.TU.Sc2ySwM_344.1609 Anthoceros agrestis HOM05D006993 ORTHO05D008336 2.6e-28 129.8 109 54.1
Mapoly0043s0057 Marchantia polymorpha HOM05D006993 ORTHO05D008336 2.2e-24 116.7 108 51.9
SMO111G0038 Selaginella moellendorffii HOM05D006993 ORTHO05D008336 3.8e-24 115.9 101 53.5
Pp3c2_17900 Physcomitrium patens HOM05D006993 ORTHO05D008336 2.1e-22 110.2 107 48.6
CBR_g51823 Chara braunii HOM05D006993 ORTHO05D008336 1.2e-14 84.3 72 55.6
Haze_03547 Corylus avellana HOM05D006993 ORTHO05D008336 3.4e-12 76.3 150 51.3
Ca_23582_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 1.1e-07 61.2 38 78.9
Gohir.D11G152300 Gossypium hirsutum HOM05D006993 ORTHO05D008336 4.3e-07 59.3 147 39.5


User provided reference genes

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