Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 1.5e-161 573.9 292 100.0
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 9.8e-108 395.2 289 70.9
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 9.9e-100 368.6 292 67.1
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 3.3e-95 353.6 293 65.5
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 2.6e-76 290.8 294 57.8
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 8.4e-75 285.8 301 54.8
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 7.1e-74 282.7 296 55.7
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 3.2e-66 257.3 176 75.0
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 3.4e-52 210.7 244 50.0
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 2.9e-51 207.6 244 48.4
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 7.2e-50 203.0 221 49.8
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 7.2e-50 203.0 221 49.8
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 6.1e-49 199.9 225 48.4
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 2.0e-47 194.9 210 55.2
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 2.6e-44 184.5 231 46.3
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 1.7e-43 181.8 246 44.7
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 5.0e-43 180.3 207 48.8
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 5.0e-43 180.3 207 46.9
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 2.1e-41 174.9 193 45.1
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 2.7e-41 174.5 229 43.2
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 4.7e-41 173.7 234 44.4
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 2.3e-40 171.4 294 36.1
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 2.0e-39 168.3 247 42.1
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 1.7e-38 165.2 205 46.3
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 2.8e-38 164.5 245 40.8
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 1.8e-37 161.8 204 46.6
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 9.1e-37 159.5 229 44.1
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 9.1e-37 159.5 244 41.8
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 3.5e-36 157.5 291 38.5
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 5.9e-36 156.8 202 42.6
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 1.7e-35 155.2 193 45.1
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 2.2e-35 154.8 214 41.1
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 3.8e-35 154.1 244 41.0
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 1.9e-34 151.8 211 44.5
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 2.5e-34 151.4 202 45.5
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 3.2e-34 151.0 210 42.9
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 7.2e-34 149.8 174 47.7
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 1.2e-33 149.1 232 40.9
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 1.2e-33 149.1 274 32.8
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 3.6e-33 147.5 205 43.9
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 6.1e-33 146.7 195 46.2
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 1.0e-32 146.0 191 44.0
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 1.4e-32 145.6 169 47.3
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 6.7e-32 143.3 258 33.7
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 6.7e-32 143.3 200 43.0
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 1.1e-31 142.5 237 35.4
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 5.7e-31 140.2 187 42.2
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 1.7e-30 138.7 258 32.9
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.7e-30 138.7 192 43.8
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 2.2e-30 138.3 254 35.8
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 2.8e-30 137.9 229 34.9
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 4.8e-30 137.1 224 33.9
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 4.8e-30 137.1 264 36.0
Lalb_Chr11g0073041 Lupinus albus HOM05D004255 ORTHO05D004815 8.2e-30 136.3 93 73.1
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 8.2e-30 136.3 264 36.0
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.1e-29 136.0 251 39.0
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 1.4e-29 135.6 187 42.2
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 2.4e-29 134.8 206 40.3
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 7.0e-29 133.3 262 34.4
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 1.2e-28 132.5 252 35.7
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 2.7e-28 131.3 264 34.8
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 4.5e-28 130.6 147 49.0
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 4.5e-28 130.6 205 40.0
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 1.3e-27 129.0 193 37.8
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 2.2e-27 128.3 195 38.5
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 2.9e-27 127.9 173 41.6
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 5.0e-27 127.1 201 39.3
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 8.5e-27 126.3 217 35.5
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 1.9e-26 125.2 229 33.2
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 2.5e-26 124.8 208 38.0
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 3.2e-26 124.4 184 42.4
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 2.1e-25 121.7 161 44.7
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 3.6e-25 120.9 201 35.3
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.0e-24 119.4 145 46.2
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 1.4e-24 119.0 218 39.0
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 5.2e-24 117.1 179 41.9
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 8.8e-24 116.3 175 42.9
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 8.8e-24 116.3 207 35.7
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 1.5e-23 115.5 269 30.5
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 1.5e-23 115.5 175 37.7
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 1.5e-23 115.5 152 42.8
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 2.6e-23 114.8 248 32.7
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 3.4e-23 114.4 214 38.8
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 4.4e-23 114.0 147 41.5
FAN02G2222 Fragaria x ananassa HOM05D004255 ORTHO05D004815 4.4e-23 114.0 108 56.5
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 4.4e-23 114.0 159 40.3
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 5.7e-23 113.6 162 42.0
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 5.7e-23 113.6 160 40.6
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 1.7e-22 112.1 206 36.4
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 2.8e-22 111.3 200 36.5
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 8.3e-22 109.8 142 43.0
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 1.1e-21 109.4 179 39.7
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 1.8e-21 108.6 194 34.0
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 2.4e-21 108.2 182 40.1
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 4.1e-21 107.5 156 42.3
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 7.0e-21 106.7 156 43.6
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 1.2e-20 105.9 205 32.7
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 2.0e-20 105.1 220 31.8
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 4.5e-20 104.0 217 37.8
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 4.5e-20 104.0 201 36.3
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 4.5e-20 104.0 177 40.1
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 5.9e-20 103.6 209 38.3
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 7.7e-20 103.2 151 43.0
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 7.7e-20 103.2 182 34.1
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 7.7e-20 103.2 153 40.5
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 1.0e-19 102.8 170 37.1
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 1.0e-19 102.8 182 34.1
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 1.3e-19 102.4 151 43.0
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 1.3e-19 102.4 157 36.9
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 2.9e-19 101.3 211 32.2
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 2.9e-19 101.3 154 39.0
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 3.8e-19 100.9 151 42.4
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 5.0e-19 100.5 151 41.7
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 5.0e-19 100.5 151 41.7
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 6.5e-19 100.1 162 32.7
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 1.1e-18 99.4 216 31.9
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 1.5e-18 99.0 175 34.9
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 1.5e-18 99.0 217 28.1
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 3.2e-18 97.8 219 29.2
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 5.5e-18 97.1 239 28.5
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 5.5e-18 97.1 175 34.3
Sabra03G0004500 Salix brachista HOM05D004255 ORTHO05D004815 5.5e-18 97.1 150 40.7
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.2e-17 95.9 123 44.7
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 2.7e-17 94.7 178 33.1
Atru.chr8.977 Acer truncatum HOM05D004255 ORTHO05D004815 1.0e-16 92.8 90 53.3
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 1.4e-16 92.4 145 37.2
ClCG02G021360 Citrullus lanatus HOM05D004255 ORTHO05D004815 3.0e-16 91.3 205 32.7
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 4.0e-16 90.9 151 34.4
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 2.6e-15 88.2 152 34.2
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 3.4e-15 87.8 179 29.6
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 3.4e-15 87.8 205 31.2
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 4.4e-15 87.4 216 29.6
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 7.5e-15 86.7 216 29.6
Atru.chr13.2607 Acer truncatum HOM05D004255 ORTHO05D004815 3.7e-14 84.3 108 42.6
AL4G28030 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 4.9e-14 84.0 99 47.5
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 4.9e-14 84.0 190 33.2
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 6.3e-14 83.6 187 28.3
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 1.1e-13 82.8 221 25.8
Os07g0671200 Oryza sativa ssp. japonica HOM05D032177 ORTHO05D004815 2.4e-13 81.6 167 33.5
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 2.4e-13 81.6 145 33.8
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 5.4e-13 80.5 160 31.2
ECA238G3169 Erigeron canadensis HOM05D004255 ORTHO05D004815 9.2e-13 79.7 90 45.6
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 7.7e-12 76.6 155 30.3
Zm00001eb111150 Zea mays HOM05D032177 ORTHO05D004815 1.0e-11 76.3 175 33.1
CANSAT21G1589 Cannabis sativa HOM05D004255 ORTHO05D004815 1.3e-11 75.9 80 50.0
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 1.3e-11 75.9 240 26.7
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 2.3e-11 75.1 227 30.8
Zm00001eb111120 Zea mays HOM05D032177 ORTHO05D004815 2.3e-11 75.1 174 32.8
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 2.9e-11 74.7 241 27.4
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 5.0e-11 73.9 222 29.3
RcHm_v2.0_Chr5g0058061 Rosa chinensis HOM05D004255 ORTHO05D004815 6.6e-11 73.6 131 32.1
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.1e-10 72.8 243 27.2
FAN16G3598 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.5e-10 72.4 116 38.8
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 4.3e-10 70.9 251 26.7
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 1.2e-09 69.3 180 25.0
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.6e-09 68.9 266 25.2
Manes.11G149500 Manihot esculenta HOM05D004255 ORTHO05D004815 2.8e-09 68.2 159 27.7
arahy.Tifrunner.gnm1.ann1.AUE0A3 Arachis hypogaea HOM05D007893 ORTHO05D010042 4.7e-09 67.4 128 32.0
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 1.0e-08 66.2 118 29.7
arahy.Tifrunner.gnm1.ann1.7C2XF6 Arachis hypogaea HOM05D007893 ORTHO05D010042 1.4e-08 65.9 128 31.2
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 1.4e-08 65.9 118 29.7
CANSAT11G1641 Cannabis sativa HOM05D004255 ORTHO05D004815 1.8e-08 65.5 56 58.9
C03p00670 Brassica napus HOM05D007455 ORTHO05D009431 2.3e-08 65.1 118 30.5
BolC3t12630H Brassica oleracea HOM05D007455 ORTHO05D009431 2.3e-08 65.1 118 30.5
Psat6g106920 Pisum sativum HOM05D004255 ORTHO05D004815 2.3e-08 65.1 158 35.4
BcaB01g06086 Brassica carinata HOM05D007455 ORTHO05D009431 5.2e-08 63.9 118 29.7
A06p06540 Brassica napus HOM05D006888 ORTHO05D008371 8.9e-08 63.2 191 26.7
C08p19350 Brassica napus HOM05D007639 ORTHO05D009509 8.9e-08 63.2 217 28.1
Peaxi162Scf00057g00149 Petunia axillaris HOM05D000909 ORTHO05D009509 8.9e-08 63.2 264 22.7
Carub.0001s0920 Capsella rubella HOM05D006888 ORTHO05D008371 1.2e-07 62.8 191 26.7
BcaB01g06201 Brassica carinata HOM05D007455 ORTHO05D009431 1.5e-07 62.4 196 24.5
CAN.G1169.10 Capsicum annuum HOM05D023770 ORTHO05D024770 3.4e-07 61.2 84 44.0
BraA06t23865Z Brassica rapa HOM05D006888 ORTHO05D008371 9.8e-07 59.7 191 26.7
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 9.8e-07 59.7 272 26.1
Os04g0686500 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 9.8e-07 59.7 126 31.7
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 1.3e-06 59.3 285 26.0
Lj7A473T51 Lonicera japonica HOM05D007893 ORTHO05D010042 1.3e-06 59.3 143 32.2
C05p07930 Brassica napus HOM05D006888 ORTHO05D008371 1.7e-06 58.9 191 27.2
Sp1g17190 Schrenkiella parvula HOM05D007639 ORTHO05D009509 1.7e-06 58.9 224 26.3
BolC5t29545H Brassica oleracea HOM05D006888 ORTHO05D008371 2.9e-06 58.2 191 27.2
Thhalv10006776m.g Eutrema salsugineum HOM05D007639 ORTHO05D009509 2.9e-06 58.2 138 30.4
BolC4t23855H Brassica oleracea HOM05D004255 ORTHO05D004815 3.7e-06 57.8 125 32.0
Nn5g29409 Nelumbo nucifera HOM05D007063 ORTHO05D008822 6.4e-06 57.0 164 28.0
PGR031G3623 Punica granatum HOM05D006819 ORTHO05D008763 6.4e-06 57.0 250 26.4
AL1G20420 Arabidopsis lyrata HOM05D006888 ORTHO05D008371 8.3e-06 56.6 191 24.6
Sopen10g024640 Solanum pennellii HOM05D000001 ORTHO05D009961 8.3e-06 56.6 115 28.7
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 8.3e-06 56.6 239 27.6


User provided reference genes

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