Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.2e-71 273.5 178 100.0
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 9.2e-69 263.8 178 94.4
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 1.3e-67 260.0 178 95.5
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 1.4e-64 250.0 178 92.7
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 7.1e-61 237.7 174 84.5
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.6e-60 236.5 178 86.0
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 1.6e-60 236.5 178 88.2
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 7.8e-60 234.2 178 84.8
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 1.7e-59 233.0 178 87.1
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 3.0e-59 232.3 175 85.7
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 1.5e-58 229.9 177 66.1
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 5.6e-58 228.0 177 84.7
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 1.6e-57 226.5 179 83.2
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 2.1e-57 226.1 178 83.1
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 2.8e-57 225.7 177 83.1
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 6.2e-57 224.6 177 83.1
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 9.0e-56 220.7 177 82.5
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 4.5e-55 218.4 177 63.3
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 1.3e-54 216.9 175 82.3
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 1.3e-54 216.9 175 82.3
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 1.7e-54 216.5 177 80.2
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 1.7e-54 216.5 180 81.7
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 1.7e-54 216.5 177 82.5
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 1.7e-54 216.5 177 81.4
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 2.9e-54 215.7 174 80.5
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 2.9e-54 215.7 177 83.6
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 2.9e-54 215.7 177 80.8
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 6.4e-54 214.5 174 83.3
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 6.4e-54 214.5 177 81.4
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 1.1e-53 213.8 180 80.6
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.4e-53 213.4 177 81.4
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 1.4e-53 213.4 175 81.7
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 1.9e-53 213.0 176 82.4
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 1.9e-53 213.0 174 82.8
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 2.4e-53 212.6 174 82.2
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 3.2e-53 212.2 177 78.5
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 3.2e-53 212.2 177 80.8
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 4.2e-53 211.8 177 76.8
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 5.4e-53 211.5 176 81.2
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 5.4e-53 211.5 176 81.8
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.6e-52 209.9 176 79.5
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 1.6e-52 209.9 176 79.5
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 3.5e-52 208.8 179 79.9
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 3.5e-52 208.8 179 80.4
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 6.0e-52 208.0 174 79.3
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 7.9e-52 207.6 176 61.4
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 1.0e-51 207.2 177 81.4
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.3e-51 206.8 174 80.5
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 1.8e-51 206.5 176 77.3
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.8e-51 206.5 200 55.0
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 2.3e-51 206.1 176 78.4
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 2.3e-51 206.1 176 80.7
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 3.0e-51 205.7 176 79.0
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 3.0e-51 205.7 174 61.5
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 3.9e-51 205.3 177 74.0
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 5.1e-51 204.9 179 79.9
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 5.1e-51 204.9 174 79.9
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 6.7e-51 204.5 177 79.7
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 8.7e-51 204.1 176 60.2
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 8.7e-51 204.1 176 60.2
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 8.7e-51 204.1 176 79.5
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 1.5e-50 203.4 175 80.6
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 1.5e-50 203.4 173 80.9
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 1.9e-50 203.0 176 79.5
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 1.9e-50 203.0 176 78.4
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 1.9e-50 203.0 176 78.4
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 2.5e-50 202.6 174 79.9
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 2.5e-50 202.6 176 79.5
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 7.4e-50 201.1 176 77.8
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 1.6e-49 199.9 177 78.5
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 2.1e-49 199.5 175 78.9
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 6.2e-49 198.0 175 78.9
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 1.8e-48 196.4 176 78.4
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 5.3e-48 194.9 176 76.7
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 2.6e-47 192.6 175 73.7
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 2.6e-47 192.6 250 46.0
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 7.6e-47 191.0 174 77.6
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 1.3e-46 190.3 174 76.4
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 4.9e-46 188.3 174 76.4
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 8.4e-46 187.6 174 74.7
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 2.4e-45 186.0 175 76.6
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 3.2e-45 185.7 174 74.1
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 5.5e-45 184.9 155 83.2
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 1.2e-44 183.7 204 63.7
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 3.5e-44 182.2 176 73.3
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 3.5e-44 182.2 179 54.2
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 3.9e-43 178.7 179 53.1
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 3.9e-43 178.7 193 49.2
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 1.5e-42 176.8 173 72.8
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 1.5e-42 176.8 163 52.8
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 1.8e-40 169.9 173 55.5
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 4.0e-40 168.7 178 52.8
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 2.6e-39 166.0 179 48.6
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 5.8e-39 164.9 195 66.7
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 7.6e-39 164.5 176 70.5
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 7.6e-39 164.5 174 46.0
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.3e-38 163.7 173 52.6
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 1.7e-38 163.3 91 84.6
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 3.8e-38 162.2 145 80.7
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 3.8e-38 162.2 172 48.8
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 1.9e-37 159.8 138 82.6
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 5.5e-37 158.3 217 47.5
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 7.9e-36 154.5 140 81.4
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 1.3e-35 153.7 138 73.2
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 5.7e-34 148.3 179 62.6
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 5.7e-34 148.3 140 80.0
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.1e-32 144.1 126 78.6
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.4e-32 143.7 84 77.4
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 4.1e-32 142.1 93 73.1
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 9.0e-32 141.0 166 66.9
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 3.4e-31 139.0 166 66.3
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 4.5e-31 138.7 153 71.2
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 8.5e-30 134.4 89 70.8
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 2.1e-28 129.8 119 56.3
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 7.9e-28 127.9 89 65.2
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 3.7e-25 119.0 147 48.3
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 1.8e-24 116.7 118 51.7
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 5.5e-21 105.1 165 40.6
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 3.0e-19 99.4 117 41.9
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 7.7e-15 84.7 101 45.5
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 6.7e-11 71.6 48 72.9
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 9.7e-10 67.8 36 86.1
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 7.7e-07 58.2 36 72.2
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 1.0e-06 57.8 36 75.0
Haze_10727 Corylus avellana HOM05D006436 ORTHO05D008011 1.7e-06 57.0 32 75.0
Nitab4.5_0011078g0030 Nicotiana tabacum HOM05D006436 ORTHO05D008011 6.5e-06 55.1 36 66.7


User provided reference genes

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