Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R9K5QN Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1954.1 1001 100.0
arahy.Tifrunner.gnm1.ann1.U1NNDF Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1878.2 1010 96.3
Glyma.18G203900 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1772.3 1008 89.5
VMungo1383G1310 Vigna mungo HOM05D004746 ORTHO05D005863 0.0e+00 1766.1 1010 89.1
Phvul.008G095700 Phaseolus vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1765.4 1010 89.1
Lj1g0027952 Lotus japonicus HOM05D004746 ORTHO05D005863 0.0e+00 1759.2 1010 88.3
Glyma.07G152800 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1746.9 1008 88.5
Psat3g125960 Pisum sativum HOM05D004746 ORTHO05D005863 0.0e+00 1746.9 1010 87.7
Ca_07663_v3 Cicer arietinum L. HOM05D004746 ORTHO05D005863 0.0e+00 1744.9 1010 87.7
TPR.G35441 Trifolium pratense HOM05D004746 ORTHO05D005863 0.0e+00 1739.5 1010 87.4
Medtr7g069460 Medicago truncatula HOM05D004746 ORTHO05D005863 0.0e+00 1732.2 1010 86.9
Lalb_Chr19g0124371 Lupinus albus HOM05D004746 ORTHO05D005863 0.0e+00 1724.1 1008 87.7
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 0.0e+00 1598.9 1012 79.7
Manes.09G106500 Manihot esculenta HOM05D004746 ORTHO05D005863 0.0e+00 1587.0 1012 78.8
Ciclev10010971m.g Citrus clementina HOM05D004746 ORTHO05D005863 0.0e+00 1586.2 1010 79.3
QL07p034923 Quercus lobata HOM05D004746 ORTHO05D005863 0.0e+00 1576.2 1011 79.3
Thecc.05G012200 Theobroma cacao HOM05D004746 ORTHO05D005863 0.0e+00 1575.5 1013 78.3
Duzib093G0324 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1568.5 1012 78.2
Duzib128G0341 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1567.4 1011 77.8
FvH4_4g00010 Fragaria vesca HOM05D004746 ORTHO05D005863 0.0e+00 1567.4 1009 78.1
Gorai.012G116700 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1550.8 1012 76.8
Gohir.D04G132800 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1549.6 1012 76.9
CSS0006394 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1546.2 1011 77.5
Gorai.002G262500 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1545.8 1012 76.8
Gohir.A01G226580 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1543.9 1015 76.5
Gohir.A04G093500 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1543.5 1010 76.6
CSS0013285 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1543.1 1011 77.4
Potri.016G119900 Populus trichocarpa HOM05D004746 ORTHO05D005863 0.0e+00 1540.8 1012 76.9
PGR031G3962 Punica granatum HOM05D004746 ORTHO05D005863 0.0e+00 1535.0 1010 76.1
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 0.0e+00 1533.9 1011 75.5
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1531.5 1011 75.3
Aa31LG5G18930 Aethionema arabicum HOM05D004746 ORTHO05D005863 0.0e+00 1531.2 1011 74.7
C05p58920 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1529.6 1011 75.1
BolC5t34545H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1529.6 1011 75.0
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1528.1 1011 75.1
THA.LOC104823290 Tarenaya hassleriana HOM05D004746 ORTHO05D005863 0.0e+00 1528.1 1011 75.4
AT3G08960 Arabidopsis thaliana HOM05D004746 ORTHO05D005863 0.0e+00 1525.8 1011 75.4
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 0.0e+00 1523.5 1011 74.7
FAN22G0460 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1522.3 1014 76.3
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1521.5 1012 74.8
FAN17G1409 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1521.5 1014 76.2
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1521.1 1012 74.7
Thhalv10019980m.g Eutrema salsugineum HOM05D004746 ORTHO05D005863 0.0e+00 1519.6 1011 74.9
TWI74G1023 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1517.7 1041 74.2
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1510.4 1012 74.3
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1510.0 1012 74.1
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 0.0e+00 1505.3 1011 74.4
Eucgr.A00543 Eucalyptus grandis HOM05D004746 ORTHO05D005863 0.0e+00 1503.4 1008 74.4
Actinidia11569 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1486.9 1009 74.4
Gohir.D01G216252 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1484.9 1011 74.8
CANSAT56G3938 Cannabis sativa HOM05D004746 ORTHO05D005863 0.0e+00 1481.8 1013 75.4
Nn2g10907 Nelumbo nucifera HOM05D004746 ORTHO05D005863 0.0e+00 1474.5 1017 73.4
Sopen09g001110 Solanum pennellii HOM05D004746 ORTHO05D005863 0.0e+00 1473.4 1011 73.0
Sed0023855 Sechium edule HOM05D004746 ORTHO05D005863 0.0e+00 1472.6 1015 73.3
CsaV3_3G021150 Cucumis sativus L. HOM05D004746 ORTHO05D005863 0.0e+00 1471.1 1015 73.2
EL10Ac5g12532 Beta vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1465.7 1009 72.8
MELO3C020253.2 Cucumis melo HOM05D004746 ORTHO05D005863 0.0e+00 1461.0 1015 73.1
Oeu033576.1 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1460.7 1073 69.3
Cc06_g01090 Coffea canephora HOM05D004746 ORTHO05D005863 0.0e+00 1453.3 1009 72.4
CiPaw.09G211600 Carya illinoinensis HOM05D004746 ORTHO05D005863 0.0e+00 1451.8 1012 73.8
vmacro20299 Vaccinium macrocarpon HOM05D004746 ORTHO05D005863 0.0e+00 1450.6 1080 69.0
PSO339G1342 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1446.0 1009 72.6
ECA236G1680 Erigeron canadensis HOM05D004746 ORTHO05D005863 0.0e+00 1443.7 1008 73.3
Lsat_1_v5_gn_8_100840 Lactuca sativa HOM05D004746 ORTHO05D005863 0.0e+00 1441.0 1009 72.7
Ah.02g115550 Amaranthus hybridus HOM05D004746 ORTHO05D005863 0.0e+00 1435.2 1024 70.6
AUR62030473 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1435.2 1015 70.8
Cfa017175 Carpinus fangiana HOM05D004746 ORTHO05D005863 0.0e+00 1434.9 914 79.5
DCAR_018683 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1434.9 1041 69.6
HanXRQChr12g0383171 Helianthus annuus HOM05D004746 ORTHO05D005863 0.0e+00 1434.5 998 73.4
PSO801G0820 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1426.8 1009 71.8
Migut.J00134 Erythranthe guttata HOM05D004746 ORTHO05D005863 0.0e+00 1422.9 1009 71.2
Aqoxy7G03079 Aquilegia oxysepala HOM05D004746 ORTHO05D005863 0.0e+00 1421.0 1010 69.4
TWI77G0319 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1417.9 1011 72.1
MSTRG.10207 Avicennia marina HOM05D004746 ORTHO05D005863 0.0e+00 1416.4 1010 71.0
DCAR_015390 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1413.7 1008 70.2
Sabra16G0115800 Salix brachista HOM05D004746 ORTHO05D005863 0.0e+00 1407.1 1083 67.8
Hund10978 Selenicereus undatus HOM05D004746 ORTHO05D005863 0.0e+00 1406.7 1009 69.8
Dinv13139 Davidia involucrata HOM05D004746 ORTHO05D005863 0.0e+00 1406.3 914 76.8
Oeu063393.2 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1405.2 1147 64.3
Gohir.D01G216126 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1404.0 1027 71.5
Haze_21030 Corylus avellana HOM05D004746 ORTHO05D005863 0.0e+00 1398.6 1022 72.6
AUR62010444 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1394.8 1005 70.6
SGA_v2.0_scaffold85G26719 Striga asiatica HOM05D004746 ORTHO05D005863 0.0e+00 1386.7 1069 67.0
Actinidia29088 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1380.2 992 71.9
Peaxi162Scf01132g00141 Petunia axillaris HOM05D004746 ORTHO05D005863 0.0e+00 1344.3 1008 68.5
Sc01g0006870 Simmondsia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1331.2 896 73.4
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1329.7 1012 67.7
BcaC05g29630 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1295.4 1001 67.0
MBI01_g40022_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 0.0e+00 1288.9 933 69.9
CARHR083300 Cardamine hirsuta HOM05D004746 ORTHO05D005863 0.0e+00 1279.6 835 75.6
unitig_26.g9084 Utricularia gibba HOM05D004746 ORTHO05D005863 0.0e+00 1278.1 1017 64.7
ATR0681G361 Amborella trichopoda HOM05D004746 ORTHO05D005863 0.0e+00 1264.6 1016 63.1
CDE08G1427 Ceratophyllum demersum HOM05D004746 ORTHO05D005863 0.0e+00 1253.0 1007 64.4
HPP92_001120 Vanilla planifolia HOM05D004746 ORTHO05D005863 0.0e+00 1189.1 1015 61.0
Cpa.g.sc120.53 Carica papaya HOM05D004746 ORTHO05D005863 0.0e+00 1168.3 878 69.9
Zm00001eb111960 Zea mays HOM05D004746 ORTHO05D005863 0.0e+00 1149.0 964 61.0
Lj3C949T2 Lonicera japonica HOM05D004746 ORTHO05D005863 7.5e-309 1063.9 823 67.2
SEGI_16247 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 1.2e-301 1040.0 882 58.0
Nitab4.5_0000195g0230 Nicotiana tabacum HOM05D004746 ORTHO05D005863 8.9e-294 1013.8 729 70.8
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 1.4e-286 989.9 1021 49.6
MD04G1000200 Malus domestica HOM05D004746 ORTHO05D005863 3.7e-284 981.9 611 78.1
Nitab4.5_0009417g0010 Nicotiana tabacum HOM05D004746 ORTHO05D005863 9.2e-283 977.2 704 71.0
TAR633G1894 Trochodendron aralioides HOM05D004746 ORTHO05D005863 1.7e-276 956.4 611 76.9
Pp3c14_210 Physcomitrium patens HOM05D004746 ORTHO05D005863 2.9e-276 955.7 1013 48.9
Pp3c2_22550 Physcomitrium patens HOM05D004746 ORTHO05D005863 1.6e-274 949.9 1012 49.0
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 9.0e-254 880.9 991 47.1
Prupe.1G000100 Prunus persica HOM05D004746 ORTHO05D005863 3.9e-249 865.5 630 69.5
SMO241G0033 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 2.7e-242 842.8 1034 43.8
COL.COLO4_14503 Corchorus olitorius HOM05D004746 ORTHO05D005863 1.5e-232 810.4 507 78.1
GSVIVG01003938001 Vitis vinifera HOM05D004746 ORTHO05D005863 2.5e-232 809.7 508 79.3
Dinv16905 Davidia involucrata HOM05D004746 ORTHO05D005863 2.2e-231 806.6 537 74.5
FAN12G3124 Fragaria x ananassa HOM05D004746 ORTHO05D005863 1.1e-224 784.3 507 76.5
GSVIVG01003936001 Vitis vinifera HOM05D004746 ORTHO05D005863 2.2e-220 770.0 504 77.8
SMO232G0101 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 5.1e-217 758.8 1015 41.5
Os07g0693400 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 5.9e-197 692.2 1007 42.2
ClCG05G011310 Citrullus lanatus HOM05D004746 ORTHO05D005863 7.5e-184 648.7 486 70.2
MD04G1000400 Malus domestica HOM05D004746 ORTHO05D005863 3.7e-159 566.6 393 75.6
ClCG05G011270 Citrullus lanatus HOM05D004746 ORTHO05D005863 4.8e-138 496.5 545 51.9
Glyma.16G097102 Glycine max HOM05D004746 ORTHO05D005863 7.4e-131 472.6 294 81.6
Glyma.16G097152 Glycine max HOM05D004746 ORTHO05D005863 4.0e-129 466.8 280 88.9
HPP92_001053 Vanilla planifolia HOM05D004746 ORTHO05D005863 1.4e-126 458.4 389 60.2
PRCOL_00000669 Prasinoderma coloniale HOM05D004746 ORTHO05D005863 3.0e-124 450.7 1043 29.8
Rhsim05G0217800 Rhododendron simsii HOM05D004746 ORTHO05D005863 5.3e-121 439.9 409 57.2
PGSC0003DMG400006259 Solanum tuberosum HOM05D004746 ORTHO05D005863 5.3e-121 439.9 311 73.3
Prupe.1G000300 Prunus persica HOM05D004746 ORTHO05D005863 1.7e-119 434.9 385 62.9
HPP92_001054 Vanilla planifolia HOM05D004746 ORTHO05D005863 4.8e-114 416.8 404 55.9
Dinv16904 Davidia involucrata HOM05D004746 ORTHO05D005863 6.9e-105 386.3 468 49.8
Psat2g043480 Pisum sativum HOM05D004746 ORTHO05D005863 4.8e-98 363.6 222 86.9
Cre02.g078885 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D005863 1.8e-97 361.7 1160 26.3
Os03g0292900 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 8.8e-76 289.7 302 50.3
CBR_g44564 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-72 278.1 310 45.2
Lsat_1_v5_gn_5_53800 Lactuca sativa HOM05D004746 ORTHO05D005863 2.7e-64 251.5 213 61.0
ClCG05G011300 Citrullus lanatus HOM05D004746 ORTHO05D005863 5.6e-62 243.8 141 83.0
Lj3A949T17 Lonicera japonica HOM05D004746 ORTHO05D005863 1.4e-60 239.2 216 60.6
Glyma.16G097051 Glycine max HOM05D004746 ORTHO05D005863 8.9e-52 209.9 126 83.3
CBR_g44557 Chara braunii HOM05D004746 ORTHO05D005863 1.5e-51 209.1 177 57.6
CDE04G0811 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 3.2e-41 174.9 129 68.2
CAN.G5.2 Capsicum annuum HOM05D004746 ORTHO05D005863 9.2e-41 173.3 134 70.1
COL.COLO4_14504 Corchorus olitorius HOM05D004746 ORTHO05D005863 2.1e-29 135.6 88 73.9
Lsat_1_v5_gn_5_87500 Lactuca sativa HOM05D004746 ORTHO05D005863 2.8e-29 135.2 170 48.8
CBR_g44565 Chara braunii HOM05D004746 ORTHO05D001702 4.5e-27 127.9 183 39.3
Psat0ss9382g0120 Pisum sativum HOM05D002370 ORTHO05D003878 4.5e-27 127.9 80 77.5
CAN.G5.1 Capsicum annuum HOM05D004746 ORTHO05D005863 7.6e-27 127.1 92 68.5
Lsat_1_v5_gn_5_55000 Lactuca sativa HOM05D004746 ORTHO05D005863 8.4e-26 123.6 91 65.9
Psat3g181680 Pisum sativum HOM05D004746 ORTHO05D005863 1.4e-25 122.9 78 78.2
Lj3A949T18 Lonicera japonica HOM05D004746 ORTHO05D005863 2.3e-23 115.5 76 71.1
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 3.3e-22 111.7 66 83.3
CAN.G610.28 Capsicum annuum HOM05D004746 ORTHO05D005863 5.6e-22 110.9 79 65.8
MD14G1122700 Malus domestica HOM05D000325 ORTHO05D001655 1.2e-19 103.2 121 48.8
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 7.6e-19 100.5 91 63.7
FAN17G0995 Fragaria x ananassa HOM05D004746 ORTHO05D005863 2.3e-15 89.0 56 75.0
SalBow5G0496 Salvia bowleyana HOM05D004746 ORTHO05D005863 3.9e-15 88.2 61 65.6
SEGI_11102 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 3.9e-15 88.2 136 41.2
CBR_g44559 Chara braunii HOM05D000019 ORTHO05D000353 8.4e-10 70.5 93 38.7
Cre02.g084650 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D146592 1.1e-09 70.1 560 19.8
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 2.5e-09 68.9 133 33.1
MBI01_g36267_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 2.5e-09 68.9 44 70.5
Cpa.g.sc120.51 Carica papaya HOM05D004746 ORTHO05D005863 7.1e-09 67.4 51 60.8
Cfa026283 Carpinus fangiana HOM05D002786 ORTHO05D003493 7.1e-09 67.4 141 26.2
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 9.3e-09 67.0 133 32.3
Psat0s1759g0080 Pisum sativum HOM05D001955 ORTHO05D001917 1.2e-08 66.6 39 76.9
Mapoly0014s0213 Marchantia polymorpha HOM05D002786 ORTHO05D003493 4.6e-08 64.7 174 28.2
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 4.6e-08 64.7 137 31.4
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 6.0e-08 64.3 171 30.4
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 7.9e-08 63.9 47 55.3
Nn3g17629 Nelumbo nucifera HOM05D001046 ORTHO05D005883 1.3e-07 63.2 129 28.7
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 2.3e-07 62.4 142 31.0
AagrBONN_evm.TU.Sc2ySwM_344.2799 Anthoceros agrestis HOM05D002786 ORTHO05D003493 3.9e-07 61.6 167 27.5
CAN.G740.7 Capsicum annuum HOM05D004746 ORTHO05D005863 3.9e-07 61.6 47 59.6
ATR0609G059 Amborella trichopoda HOM05D002786 ORTHO05D003493 1.5e-06 59.7 150 26.7
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 2.5e-06 58.9 137 28.5
Pp3c15_21650 Physcomitrium patens HOM05D002786 ORTHO05D003493 3.3e-06 58.5 173 26.6
MBI07_g00622_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D003493 4.3e-06 58.2 153 28.1
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 5.7e-06 57.8 143 28.0
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 5.7e-06 57.8 143 28.0
ECA233G2610 Erigeron canadensis HOM05D002786 ORTHO05D003493 9.6e-06 57.0 179 24.0


User provided reference genes

Program Settings