Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 5.8e-92 340.9 173 100.0
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 1.8e-77 292.7 156 95.5
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 2.1e-54 216.1 154 68.2
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 6.9e-53 211.1 154 67.5
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 3.4e-52 208.8 152 68.4
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 4.5e-52 208.4 154 67.5
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 5.8e-52 208.0 156 67.3
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 5.0e-51 204.9 133 73.7
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 6.5e-51 204.5 164 65.2
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 6.5e-51 204.5 156 65.4
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 1.1e-50 203.8 127 76.4
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 1.1e-50 203.8 153 68.6
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.4e-50 203.4 128 75.0
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 2.5e-50 202.6 153 65.4
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 3.2e-50 202.2 152 66.4
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 5.5e-50 201.4 152 67.8
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 9.3e-50 200.7 149 67.1
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 9.3e-50 200.7 129 76.0
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 2.1e-49 199.5 128 75.0
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 3.5e-49 198.7 136 73.5
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 7.9e-49 197.6 133 73.7
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 1.0e-48 197.2 145 64.1
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 1.0e-48 197.2 155 67.7
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.3e-48 196.8 146 67.1
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 2.3e-48 196.1 158 63.3
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 3.0e-48 195.7 135 68.9
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 3.0e-48 195.7 154 64.3
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 3.9e-48 195.3 153 64.1
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 5.1e-48 194.9 151 64.2
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 5.1e-48 194.9 152 61.8
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 5.1e-48 194.9 154 62.3
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 8.7e-48 194.1 153 64.7
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 1.5e-47 193.4 153 64.7
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 1.5e-47 193.4 123 72.4
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 1.9e-47 193.0 153 64.7
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 1.9e-47 193.0 153 63.4
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 1.9e-47 193.0 124 74.2
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 1.9e-47 193.0 152 61.2
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 2.5e-47 192.6 153 64.1
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 2.5e-47 192.6 148 66.9
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 3.3e-47 192.2 145 67.6
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 4.3e-47 191.8 127 70.1
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 5.7e-47 191.4 130 70.0
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 7.4e-47 191.0 154 60.4
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 7.4e-47 191.0 153 61.4
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 9.7e-47 190.7 128 71.9
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 2.2e-46 189.5 125 71.2
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 2.2e-46 189.5 154 66.9
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 2.8e-46 189.1 127 71.7
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 4.8e-46 188.3 154 60.4
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 4.8e-46 188.3 154 61.7
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 4.8e-46 188.3 154 62.3
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 4.8e-46 188.3 154 61.7
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 6.3e-46 188.0 156 62.2
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 6.3e-46 188.0 151 60.3
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 6.3e-46 188.0 128 68.0
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 8.2e-46 187.6 149 63.1
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 8.2e-46 187.6 129 68.2
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 8.2e-46 187.6 153 66.0
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 8.2e-46 187.6 149 60.4
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 1.1e-45 187.2 157 65.0
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 1.4e-45 186.8 154 61.7
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 1.4e-45 186.8 125 72.8
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 1.8e-45 186.4 129 65.9
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 1.8e-45 186.4 151 58.9
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 2.4e-45 186.0 153 66.0
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 2.4e-45 186.0 141 63.1
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 3.1e-45 185.7 146 63.0
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 3.1e-45 185.7 145 64.1
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 4.1e-45 185.3 154 64.9
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 4.1e-45 185.3 125 71.2
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 9.0e-45 184.1 124 77.4
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 9.0e-45 184.1 128 71.9
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 9.0e-45 184.1 129 65.1
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 1.2e-44 183.7 126 67.5
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 1.5e-44 183.3 129 65.1
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 2.0e-44 183.0 152 61.8
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 2.6e-44 182.6 128 68.8
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 3.4e-44 182.2 139 64.0
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 5.9e-44 181.4 124 69.4
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 8.5e-43 177.6 129 72.1
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 1.1e-42 177.2 152 63.2
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 1.4e-42 176.8 127 67.7
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 3.2e-42 175.6 126 66.7
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 7.2e-42 174.5 145 61.4
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 2.7e-41 172.6 144 59.0
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 4.6e-41 171.8 133 62.4
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 1.8e-40 169.9 124 66.9
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 3.0e-40 169.1 156 59.6
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 3.0e-40 169.1 129 69.0
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 5.1e-40 168.3 125 71.2
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 6.7e-40 167.9 156 58.3
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.5e-39 166.8 133 63.2
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 1.5e-39 166.8 125 72.0
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 3.3e-39 165.6 144 56.9
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 1.3e-38 163.7 123 66.7
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 2.8e-38 162.5 126 65.9
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 2.4e-37 159.5 125 61.6
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 2.6e-36 156.0 125 62.4
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 2.9e-35 152.5 126 59.5
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 2.9e-35 152.5 127 63.0
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 3.8e-35 152.1 152 52.6
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 2.5e-34 149.4 134 57.5
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 3.2e-34 149.1 125 56.0
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 5.5e-34 148.3 129 59.7
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 3.1e-29 132.5 152 46.7
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 5.3e-29 131.7 152 46.1
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 3.5e-28 129.0 122 50.8
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 2.2e-27 126.3 121 48.8
BcaC08g47099 Brassica carinata HOM05D006402 ORTHO05D008099 3.8e-27 125.6 103 64.1
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 1.5e-26 123.6 90 64.4
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 4.2e-26 122.1 124 51.6
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 7.5e-23 111.3 117 50.4
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 2.8e-22 109.4 146 45.2
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 2.4e-21 106.3 128 46.1
QL08p014343 Quercus lobata HOM05D006402 ORTHO05D008099 1.0e-19 100.9 126 46.8
MD15G1006900 Malus domestica HOM05D006402 ORTHO05D008099 5.0e-19 98.6 92 57.6
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 8.5e-19 97.8 120 44.2
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 3.2e-18 95.9 85 55.3
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 1.8e-16 90.1 81 49.4
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 2.3e-16 89.7 149 36.9
Glyma.14G222200 Glycine max HOM05D006402 ORTHO05D008099 1.8e-13 80.1 83 56.6
Sed0026898 Sechium edule HOM05D006402 ORTHO05D008099 3.1e-13 79.3 117 41.0
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 2.7e-09 66.2 90 48.9


User provided reference genes

Program Settings