Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 6.8e-175 617.5 368 100.0
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 1.1e-153 547.0 368 93.2
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 7.9e-115 417.9 371 67.4
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 4.7e-107 392.1 373 67.6
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 3.3e-105 386.0 375 63.2
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 7.2e-100 368.2 373 63.0
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 1.4e-98 364.0 373 60.1
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 2.2e-93 346.7 375 58.7
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 9.4e-92 341.3 376 58.0
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 1.4e-90 337.4 372 57.3
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 1.2e-89 334.3 377 56.0
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 3.3e-89 332.8 373 56.6
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 3.3e-89 332.8 370 57.0
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 9.7e-89 331.3 372 57.0
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 1.7e-88 330.5 373 56.6
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 3.7e-88 329.3 374 56.7
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 4.8e-88 328.9 378 56.6
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 6.3e-88 328.6 373 56.6
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 1.1e-87 327.8 374 57.5
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 1.1e-87 327.8 370 57.6
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 1.4e-87 327.4 375 54.4
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 1.8e-87 327.0 375 57.1
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 4.1e-87 325.9 372 57.5
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 5.3e-87 325.5 374 54.8
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 7.0e-87 325.1 370 56.5
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 7.0e-87 325.1 375 56.0
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 7.0e-87 325.1 375 56.0
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 9.1e-87 324.7 362 58.3
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 9.1e-87 324.7 373 55.5
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 1.6e-86 323.9 376 57.2
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.3e-85 320.9 375 56.5
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.2e-85 320.1 375 56.5
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 2.9e-85 319.7 374 54.3
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 3.8e-85 319.3 375 55.7
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 5.0e-85 318.9 373 57.4
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 6.5e-85 318.5 373 55.5
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 1.9e-84 317.0 378 55.3
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 3.2e-84 316.2 376 54.5
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 7.2e-84 315.1 373 55.0
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 1.2e-83 314.3 371 54.7
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 4.7e-83 312.4 371 53.4
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 4.7e-83 312.4 374 56.7
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 1.0e-82 311.2 371 55.3
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 1.4e-82 310.8 375 59.5
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 1.8e-82 310.5 375 54.7
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 1.8e-82 310.5 369 53.9
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 3.0e-82 309.7 370 54.9
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 6.8e-82 308.5 372 54.3
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 8.8e-82 308.1 374 55.6
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 1.2e-81 307.8 376 54.5
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 2.0e-81 307.0 372 54.0
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 4.4e-81 305.8 370 53.5
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 4.4e-81 305.8 371 52.6
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 9.8e-81 304.7 374 54.8
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 9.8e-81 304.7 371 53.6
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 9.8e-81 304.7 371 54.4
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 1.7e-80 303.9 374 55.3
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 1.7e-80 303.9 373 54.4
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 2.2e-80 303.5 374 55.3
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.2e-80 303.5 376 56.9
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.2e-80 303.5 376 56.9
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 2.8e-80 303.1 384 53.6
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 6.3e-80 302.0 370 54.9
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 8.3e-80 301.6 358 53.9
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 3.1e-79 299.7 370 54.6
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 5.4e-79 298.9 387 53.5
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 7.0e-79 298.5 371 55.3
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 7.0e-79 298.5 371 55.3
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 9.1e-79 298.1 383 52.2
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 9.1e-79 298.1 376 52.4
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 1.2e-78 297.7 375 54.1
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.6e-78 297.4 376 51.6
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.6e-78 297.4 376 51.3
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 2.0e-78 297.0 371 53.1
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 3.5e-78 296.2 373 51.5
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 7.7e-78 295.0 440 47.0
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 1.5e-76 290.8 373 53.1
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 9.5e-76 288.1 373 52.8
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 2.8e-75 286.6 380 50.5
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 6.1e-75 285.4 373 53.4
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 6.1e-75 285.4 373 53.4
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 2.0e-73 280.4 370 51.1
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 3.4e-73 279.6 363 50.4
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 1.3e-72 277.7 397 49.6
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 2.2e-72 276.9 373 50.4
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 4.9e-72 275.8 374 50.8
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 4.1e-71 272.7 362 50.8
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 7.0e-71 271.9 352 52.8
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 7.8e-70 268.5 373 52.0
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 1.0e-69 268.1 322 55.6
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 1.2e-67 261.2 376 50.3
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 4.7e-67 259.2 238 63.9
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 1.4e-66 257.7 316 53.5
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 1.1e-63 248.1 373 46.1
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.4e-63 247.7 276 58.3
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 2.4e-63 246.9 403 43.7
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 3.1e-58 229.9 254 58.7
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 2.6e-57 226.9 371 43.1
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 1.6e-54 217.6 372 43.3
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 4.0e-50 203.0 373 44.2
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 3.4e-49 199.9 208 59.6
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.7e-48 197.6 201 60.2
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 2.7e-46 190.3 227 52.9
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 8.6e-45 185.3 352 43.2
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 4.4e-41 172.9 142 68.3
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 4.4e-41 172.9 193 57.5
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 1.1e-39 168.3 339 40.7
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 6.0e-38 162.5 202 54.5
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 6.9e-34 149.1 272 36.8
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 9.9e-33 145.2 131 64.1
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 1.6e-30 137.9 256 40.6
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 7.8e-30 135.6 316 34.5
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 2.3e-29 134.0 258 39.9
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 2.5e-28 130.6 398 33.9
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 4.3e-28 129.8 113 65.5
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 7.6e-25 119.0 203 41.4
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 9.3e-23 112.1 241 39.0
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 9.3e-23 112.1 96 65.6
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 7.9e-22 109.0 272 32.7
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 3.8e-16 90.1 92 55.4
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 3.2e-15 87.0 250 33.2
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 3.3e-12 77.0 79 59.5
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 3.3e-12 77.0 86 51.2
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 9.6e-12 75.5 346 28.9
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 1.3e-11 75.1 123 42.3
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 2.4e-10 70.9 95 42.1
RcHm_v2.0_Chr2g0163651 Rosa chinensis HOM05D005714 ORTHO05D006812 1.0e-08 65.5 88 47.7
FAN09G3753 Fragaria x ananassa HOM05D001104 ORTHO05D008876 1.7e-08 64.7 63 58.7
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 1.1e-07 62.0 78 52.6
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 5.5e-07 59.7 46 71.7
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 6.1e-06 56.2 261 29.5
Sopen03g009730 Solanum pennellii HOM05D005714 ORTHO05D006812 7.9e-06 55.8 88 43.2


User provided reference genes

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