Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 6.0e-124 447.6 236 100.0
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 4.8e-113 411.4 236 93.2
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 6.2e-89 331.3 174 97.7
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 6.2e-89 331.3 174 97.7
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 1.7e-86 323.2 174 95.4
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 5.0e-86 321.6 174 94.8
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 5.0e-86 321.6 174 94.8
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 2.4e-80 302.8 174 89.1
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 2.4e-80 302.8 174 89.1
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.0e-78 297.4 174 87.4
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 1.7e-78 296.6 174 89.1
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 1.7e-78 296.6 174 89.1
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 1.7e-78 296.6 174 89.1
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 2.9e-78 295.8 174 89.1
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 5.0e-78 295.0 172 88.4
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 5.0e-78 295.0 172 88.4
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 5.0e-78 295.0 174 89.1
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 2.5e-77 292.7 185 84.9
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 3.2e-77 292.4 185 84.9
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 1.6e-76 290.0 185 83.8
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 3.6e-76 288.9 174 87.4
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 3.6e-76 288.9 174 87.4
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 6.1e-76 288.1 173 87.3
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 1.8e-75 286.6 174 87.4
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 3.0e-75 285.8 185 83.2
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 3.9e-75 285.4 174 86.2
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 5.1e-75 285.0 171 87.1
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 5.1e-75 285.0 172 84.9
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 1.5e-74 283.5 174 87.4
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 1.5e-74 283.5 174 87.4
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 3.3e-74 282.3 174 85.6
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 5.7e-74 281.6 164 89.0
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 7.4e-74 281.2 174 86.8
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 1.3e-73 280.4 174 86.8
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 1.7e-73 280.0 174 85.1
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 1.7e-73 280.0 157 92.4
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 2.8e-73 279.3 173 85.5
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 4.8e-73 278.5 174 84.5
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 6.3e-73 278.1 172 84.9
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.4e-72 276.9 194 77.8
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 1.8e-72 276.6 174 82.8
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 6.9e-72 274.6 174 85.1
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 4.5e-71 271.9 174 83.9
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 7.7e-71 271.2 170 85.9
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 2.2e-70 269.6 189 78.8
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 3.8e-70 268.9 174 83.3
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 3.8e-70 268.9 174 83.3
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 5.5e-69 265.0 151 92.1
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 1.0e-67 260.8 171 78.4
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 1.8e-67 260.0 159 87.4
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 2.3e-67 259.6 145 93.8
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 2.3e-67 259.6 145 93.8
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.0e-66 256.5 152 89.5
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 1.8e-64 250.0 158 84.8
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 5.3e-64 248.4 186 74.2
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 1.3e-62 243.8 131 94.7
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 7.2e-61 238.0 137 87.6
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 3.0e-59 232.6 143 83.2
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 5.2e-59 231.9 135 88.1
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 7.0e-56 221.5 138 83.3
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 2.6e-55 219.5 174 71.3
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 2.6e-55 219.5 174 71.3
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 2.6e-55 219.5 174 71.3
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.7e-54 216.9 132 81.8
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 5.0e-54 215.3 145 80.0
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 1.5e-53 213.8 174 69.0
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 5.5e-53 211.8 128 85.9
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 5.5e-53 211.8 128 85.9
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.5e-53 211.8 121 90.1
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 1.4e-51 207.2 121 89.3
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 1.5e-50 203.8 132 81.8
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 9.8e-50 201.1 105 97.1
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 4.8e-49 198.7 125 79.2
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 5.9e-47 191.8 188 60.6
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 1.0e-46 191.0 130 77.7
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.9e-46 189.5 115 81.7
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 4.7e-44 182.2 98 93.9
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 3.1e-40 169.5 108 84.3
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 2.7e-39 166.4 99 85.9
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 7.2e-37 158.3 89 89.9
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 4.7e-36 155.6 92 87.0
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 6.1e-36 155.2 90 92.2
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 2.9e-33 146.4 84 89.3
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 2.7e-31 139.8 79 91.1
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.9e-30 136.0 81 88.9
TPR.G39970 Trifolium pratense HOM05D007533 ORTHO05D009622 2.3e-27 126.7 68 95.6
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 1.7e-25 120.6 76 80.3
Nitab4.5_0010333g0120 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.9e-24 117.1 87 67.8
C03p57120 Brassica napus HOM05D007533 ORTHO05D009622 3.5e-23 112.8 74 79.7
BolC3t17989H Brassica oleracea HOM05D007533 ORTHO05D009622 3.5e-23 112.8 74 79.7
Peaxi162Scf01098g00011 Petunia axillaris HOM05D007533 ORTHO05D009622 1.5e-21 107.5 64 87.5
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 2.8e-20 103.2 70 78.6
HanXRQChr17g0567331 Helianthus annuus HOM05D007533 ORTHO05D009622 2.8e-20 103.2 73 75.3
Nitab4.5_0000068g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.6e-20 102.8 68 83.8
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.6e-20 102.8 65 78.5
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 4.7e-20 102.4 78 75.6
Lsat_1_v5_gn_1_118900 Lactuca sativa HOM05D007533 ORTHO05D009622 1.1e-19 101.3 73 72.6
SHI19535 Sapria himalayana HOM05D000105 ORTHO05D000023 6.8e-19 98.6 73 71.2
Gohir.D01G116666 Gossypium hirsutum HOM05D007533 ORTHO05D009622 1.5e-18 97.4 62 77.4
Oeu041867.1 Olea europaea HOM05D007533 ORTHO05D009622 7.1e-16 88.6 47 93.6
Solyc06g042990.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 4.3e-13 79.3 68 58.8
Nitab4.5_0000034g0140 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.0e-10 70.5 61 63.9
arahy.Tifrunner.gnm1.ann1.4W5XID Arachis hypogaea HOM05D056638 ORTHO05D005382 4.4e-10 69.3 78 60.3
Nitab4.5_0000832g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.4e-10 69.3 36 91.7
CDE02G0940 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 8.4e-09 65.1 39 79.5
Potri.007G062422 Populus trichocarpa HOM05D007533 ORTHO05D010378 8.4e-09 65.1 54 70.4
Nitab4.5_0000172g2020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.1e-08 64.7 73 50.7
Peaxi162Scf00673g00229 Petunia axillaris HOM05D011380 ORTHO05D016005 3.2e-08 63.2 36 91.7


User provided reference genes

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