Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 3.8e-146 521.5 273 100.0
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 3.5e-128 461.8 272 91.5
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 3.5e-128 461.8 272 91.5
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 1.0e-127 460.3 272 91.2
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 2.6e-123 445.7 272 87.1
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 1.7e-122 443.0 272 87.5
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 4.2e-121 438.3 272 85.7
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 4.2e-121 438.3 272 86.0
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 5.5e-121 438.0 272 85.3
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 4.6e-120 434.9 271 85.2
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 7.9e-120 434.1 271 84.9
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 2.3e-119 432.6 272 84.9
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 2.3e-119 432.6 272 84.2
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 3.0e-119 432.2 272 84.2
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 3.9e-119 431.8 272 84.6
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 5.1e-119 431.4 272 84.2
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 5.1e-119 431.4 272 84.2
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 5.1e-119 431.4 272 84.2
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 5.1e-119 431.4 272 84.9
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 6.7e-119 431.0 272 84.2
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 6.7e-119 431.0 272 84.6
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 6.7e-119 431.0 272 82.7
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 8.8e-119 430.6 272 84.2
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 8.8e-119 430.6 272 82.7
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 8.8e-119 430.6 272 84.6
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 8.8e-119 430.6 272 82.7
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 1.5e-118 429.9 272 83.8
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.5e-118 429.9 272 84.9
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 2.0e-118 429.5 272 84.2
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 2.5e-118 429.1 272 83.1
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 2.5e-118 429.1 272 84.6
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 2.5e-118 429.1 272 83.8
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 2.5e-118 429.1 272 83.5
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 2.5e-118 429.1 272 83.5
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 2.5e-118 429.1 272 83.1
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 3.3e-118 428.7 272 83.1
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 3.3e-118 428.7 272 84.2
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 3.3e-118 428.7 272 82.7
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 3.3e-118 428.7 272 82.7
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 4.3e-118 428.3 272 83.8
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 4.3e-118 428.3 272 84.2
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 4.3e-118 428.3 272 84.2
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 5.7e-118 427.9 272 84.2
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 5.7e-118 427.9 272 84.2
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 9.7e-118 427.2 272 83.8
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 9.7e-118 427.2 272 82.7
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 9.7e-118 427.2 272 84.2
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 9.7e-118 427.2 272 83.5
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 1.3e-117 426.8 284 83.8
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 1.3e-117 426.8 272 83.8
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 1.3e-117 426.8 272 83.8
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.3e-117 426.8 272 83.1
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 1.7e-117 426.4 272 82.7
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 2.2e-117 426.0 272 83.5
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 2.2e-117 426.0 272 83.5
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 2.8e-117 425.6 272 83.1
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 4.8e-117 424.9 272 82.4
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 4.8e-117 424.9 272 83.1
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 6.3e-117 424.5 272 83.5
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 6.3e-117 424.5 272 82.0
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 8.2e-117 424.1 272 83.5
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 1.1e-116 423.7 272 83.5
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 1.4e-116 423.3 272 82.7
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 1.4e-116 423.3 272 83.5
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 1.8e-116 422.9 272 83.1
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 3.1e-116 422.2 272 82.4
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 3.1e-116 422.2 272 82.4
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 4.1e-116 421.8 281 81.5
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 4.1e-116 421.8 272 82.0
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 5.3e-116 421.4 272 82.7
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 5.3e-116 421.4 273 83.2
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 5.3e-116 421.4 273 83.2
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 6.9e-116 421.0 272 81.2
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 6.9e-116 421.0 272 82.0
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 6.9e-116 421.0 272 83.5
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 9.1e-116 420.6 272 82.0
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 9.1e-116 420.6 273 82.8
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 9.1e-116 420.6 273 82.8
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 9.1e-116 420.6 272 81.2
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 1.2e-115 420.2 272 80.5
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 2.0e-115 419.5 272 81.2
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 2.6e-115 419.1 305 76.4
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 2.6e-115 419.1 272 82.0
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 4.5e-115 418.3 272 81.2
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 5.9e-115 417.9 272 81.6
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 5.9e-115 417.9 272 82.4
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 5.9e-115 417.9 272 81.2
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 5.9e-115 417.9 272 80.9
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 7.7e-115 417.5 272 81.6
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 1.7e-114 416.4 272 81.2
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 1.7e-114 416.4 272 82.0
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 8.5e-114 414.1 272 81.2
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 8.5e-114 414.1 272 81.2
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 1.4e-113 413.3 272 81.6
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.9e-113 412.9 272 80.9
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 2.5e-113 412.5 272 81.6
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 3.2e-113 412.1 272 79.8
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 4.2e-113 411.8 272 80.5
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 9.4e-113 410.6 272 79.8
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 2.1e-112 409.5 272 78.7
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 2.7e-112 409.1 262 83.6
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 2.7e-112 409.1 272 78.7
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 7.9e-112 407.5 295 75.3
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.8e-111 406.4 295 74.9
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.8e-111 406.4 295 74.9
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 6.7e-111 404.4 272 78.3
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 6.7e-111 404.4 295 74.6
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 6.7e-111 404.4 295 74.6
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 1.5e-110 403.3 272 77.9
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 2.6e-110 402.5 272 78.3
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 9.7e-110 400.6 272 77.2
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 4.1e-108 395.2 272 78.3
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 1.3e-106 390.2 272 77.2
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 8.5e-106 387.5 253 81.8
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 3.0e-103 379.0 273 75.1
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 9.7e-102 374.0 272 76.5
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 2.8e-101 372.5 272 72.8
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 5.3e-100 368.2 273 71.4
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 5.3e-100 368.2 252 78.2
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 1.2e-99 367.1 299 67.9
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 4.5e-99 365.2 272 74.3
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 2.6e-94 349.4 264 69.7
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 2.2e-93 346.3 222 83.8
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 1.8e-92 343.2 223 82.5
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 5.9e-91 338.2 319 61.4
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 1.6e-88 330.1 272 66.5
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 2.1e-88 329.7 195 88.2
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 1.0e-87 327.4 265 64.5
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 7.5e-86 321.2 276 67.4
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 3.7e-85 318.9 272 62.5
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 2.5e-81 306.2 240 71.2
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 2.5e-81 306.2 240 71.2
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 2.0e-75 286.6 272 64.0
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 3.1e-71 272.7 269 56.1
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 9.8e-70 267.7 216 71.3
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 1.0e-50 204.5 131 84.7
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 1.1e-47 194.5 136 77.9
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 5.2e-47 192.2 170 64.1
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 8.4e-45 184.9 198 58.6
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 7.3e-41 171.8 262 40.5
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.4e-36 156.8 229 46.3
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 4.6e-35 152.5 290 38.3
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 1.7e-34 150.6 261 37.5
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 1.5e-30 137.5 80 85.0
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.8e-29 132.9 156 51.3
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 2.3e-26 123.6 122 63.1
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 2.0e-22 110.5 58 96.6
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 1.1e-15 88.2 75 62.7
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 1.1e-15 88.2 48 93.8
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 7.6e-14 82.0 88 54.5
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 1.1e-12 78.2 90 51.1
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 1.8e-07 60.8 43 72.1


User provided reference genes

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