Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 0.0e+00 1115.1 555 100.0
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 7.4e-290 1000.0 521 96.7
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 1.8e-227 792.7 555 72.4
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 8.6e-214 747.3 560 69.8
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 1.5e-213 746.5 564 70.2
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 1.2e-207 726.9 563 68.9
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 2.6e-202 709.1 563 65.0
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 1.9e-200 703.0 560 65.7
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 7.8e-199 697.6 561 65.4
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 6.6e-190 667.9 553 64.4
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 4.3e-189 665.2 549 63.6
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 9.9e-186 654.1 550 62.0
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 6.4e-185 651.4 554 62.1
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 1.9e-184 649.8 544 63.4
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 3.2e-184 649.0 546 63.2
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 3.9e-182 642.1 549 61.7
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 9.6e-181 637.5 468 68.8
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 4.8e-180 635.2 567 59.8
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 8.1e-180 634.4 561 61.3
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 1.1e-179 634.0 555 60.9
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 1.2e-178 630.6 548 61.9
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 2.6e-178 629.4 546 61.4
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 3.4e-178 629.0 539 62.2
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 2.2e-177 626.3 551 61.0
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 4.2e-176 622.1 543 60.8
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.2e-175 620.5 552 60.0
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 2.7e-175 619.4 543 60.4
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 2.7e-175 619.4 496 65.3
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 3.5e-175 619.0 543 60.6
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 1.3e-174 617.1 561 58.8
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 1.5e-173 613.6 556 59.9
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 2.5e-173 612.8 555 58.7
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 3.3e-173 612.5 554 58.7
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 1.3e-172 610.5 568 57.9
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 2.1e-172 609.8 546 59.3
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 3.7e-172 609.0 553 59.0
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 4.8e-172 608.6 559 59.2
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 8.1e-172 607.8 545 59.3
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.0e-170 603.2 562 59.3
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 2.6e-170 602.8 553 58.8
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 9.9e-170 600.9 561 58.3
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 1.7e-169 600.1 552 58.9
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 6.4e-169 598.2 562 59.6
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 8.4e-169 597.8 553 58.4
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 5.5e-168 595.1 556 58.3
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.2e-167 594.0 554 57.0
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 1.0e-166 590.9 545 59.3
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 2.3e-166 589.7 563 56.3
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 2.5e-165 586.3 555 56.9
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 2.8e-164 582.8 556 58.5
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 5.3e-163 578.6 551 57.7
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 2.0e-162 576.6 554 57.8
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 4.5e-162 575.5 554 57.6
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 7.6e-162 574.7 560 56.6
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 7.6e-162 574.7 552 57.4
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 1.3e-161 573.9 557 56.7
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 3.2e-160 569.3 554 55.8
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 5.5e-160 568.5 550 57.3
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 7.1e-160 568.2 559 55.1
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 9.3e-160 567.8 567 54.9
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 2.1e-159 566.6 525 58.1
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 2.7e-159 566.2 495 60.0
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.7e-159 566.2 581 56.5
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 3.5e-159 565.8 495 59.8
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 6.0e-159 565.1 564 54.3
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 3.0e-158 562.8 566 54.9
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.5e-157 560.5 576 53.8
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 4.3e-157 558.9 564 54.6
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 7.4e-157 558.1 577 53.4
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 1.6e-156 557.0 558 55.2
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 2.2e-156 556.6 569 54.0
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 2.8e-156 556.2 562 55.2
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 9.0e-155 551.2 549 55.2
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 4.5e-154 548.9 563 53.5
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 5.9e-154 548.5 563 54.0
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 1.7e-153 547.0 568 53.5
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 1.7e-153 547.0 557 54.2
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.2e-153 546.6 622 50.2
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 2.2e-153 546.6 557 54.6
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 2.2e-153 546.6 554 54.9
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 3.8e-153 545.8 563 53.1
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 5.0e-153 545.4 563 53.5
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 5.0e-153 545.4 552 53.3
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 6.5e-153 545.0 564 53.7
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 1.4e-152 543.9 564 53.0
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 5.5e-152 542.0 576 52.8
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 9.4e-152 541.2 564 52.8
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 9.4e-152 541.2 574 54.0
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.2e-151 540.8 555 52.3
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 1.0e-150 537.7 564 54.4
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.3e-148 530.8 557 54.9
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 3.7e-148 529.3 584 51.5
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 2.0e-146 523.5 544 51.7
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 4.5e-146 522.3 629 49.1
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 2.2e-145 520.0 574 50.7
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 3.6e-143 512.7 510 53.9
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 1.4e-142 510.8 495 55.6
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 1.8e-142 510.4 500 57.4
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 2.3e-142 510.0 564 51.4
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 9.1e-139 498.0 574 48.3
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 3.4e-138 496.1 551 50.5
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 1.0e-137 494.6 492 56.5
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 2.9e-137 493.0 448 59.2
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 8.5e-137 491.5 526 52.5
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 1.6e-135 487.3 606 46.2
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 1.4e-134 484.2 508 53.9
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 7.4e-133 478.4 557 51.0
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 1.3e-132 477.6 560 47.5
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 7.7e-130 468.4 565 47.6
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 1.0e-129 468.0 524 50.6
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 8.5e-129 464.9 562 48.8
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 1.6e-127 460.7 470 51.7
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 2.1e-127 460.3 547 47.7
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 2.3e-126 456.8 557 48.5
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 7.2e-120 435.3 564 46.1
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 2.4e-115 420.2 544 43.2
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 2.0e-114 417.2 504 48.4
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.0e-113 414.8 448 50.0
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 2.3e-110 403.7 561 43.0
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.3e-108 395.6 570 42.1
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.1e-107 394.8 462 51.1
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.1e-107 392.9 570 40.9
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.4e-107 392.5 579 40.1
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.4e-107 392.5 579 40.1
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.7e-106 390.2 586 39.4
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 5.2e-102 375.9 305 63.3
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 4.6e-98 362.8 328 60.7
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 1.9e-96 357.5 523 40.5
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 4.3e-88 329.7 563 38.0
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 1.1e-83 315.1 425 45.9
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 9.2e-83 312.0 370 47.6
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 5.6e-80 302.8 706 31.9
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 5.6e-72 276.2 166 74.7
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.6e-71 274.6 587 32.4
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 8.1e-71 272.3 624 32.7
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 5.3e-70 269.6 168 73.2
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 3.8e-68 263.5 472 37.3
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 2.4e-62 244.2 401 40.6
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 3.9e-49 200.3 177 65.0
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 1.1e-48 198.7 196 50.5
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 5.6e-48 196.4 260 45.0
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 3.1e-46 190.7 152 63.2
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 1.2e-45 188.7 194 56.2
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 3.3e-40 170.6 140 63.6
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 4.8e-39 166.8 137 62.8
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 5.3e-38 163.3 120 64.2
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 5.5e-35 153.3 281 38.1
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 7.4e-32 142.9 161 51.6
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.5e-29 135.2 152 50.7
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 7.9e-26 122.9 166 40.4
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 6.7e-25 119.8 94 61.7
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 1.8e-22 111.7 193 33.2
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 1.2e-18 99.0 99 52.5
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 5.2e-17 93.6 69 58.0
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.0e-12 79.3 99 43.4
arahy.Tifrunner.gnm1.ann1.E99XLH Arachis hypogaea HOM05D002152 ORTHO05D031610 4.8e-07 60.5 48 56.2
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 4.1e-06 57.4 39 61.5


User provided reference genes

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