Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 9.3e-283 976.1 452 100.0
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 5.6e-280 966.8 452 98.9
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 7.4e-232 807.0 424 86.1
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 2.4e-230 802.0 441 83.4
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 1.5e-227 792.7 438 83.1
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 7.2e-227 790.4 442 82.4
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 1.4e-225 786.2 428 83.4
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 1.5e-224 782.7 443 79.9
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 3.7e-223 778.1 435 80.5
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 6.3e-223 777.3 427 81.5
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.3e-220 769.6 423 79.2
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 6.5e-220 767.3 418 80.1
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 3.2e-219 765.0 446 77.8
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 3.2e-219 765.0 444 77.0
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 1.6e-218 762.7 423 79.2
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 2.1e-218 762.3 423 79.2
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 1.8e-217 759.2 436 77.8
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 1.2e-216 756.5 437 78.0
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 5.7e-216 754.2 423 78.7
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 1.7e-215 752.7 437 77.1
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 3.7e-215 751.5 423 78.0
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 1.1e-214 750.0 438 76.3
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 2.4e-214 748.8 440 77.5
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 5.4e-214 747.7 429 77.2
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 7.0e-214 747.3 426 77.0
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.2e-213 746.5 438 75.8
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 2.7e-213 745.3 426 77.0
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 2.7e-213 745.3 452 74.6
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 3.5e-213 745.0 434 75.3
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 7.7e-213 743.8 423 78.3
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 7.7e-213 743.8 423 77.5
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 2.9e-212 741.9 447 74.9
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 1.5e-211 739.6 423 76.6
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 1.9e-211 739.2 426 76.1
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 4.2e-211 738.0 476 70.6
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 1.2e-210 736.5 437 75.3
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 2.1e-210 735.7 423 77.5
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 3.0e-209 731.9 434 75.8
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 4.4e-208 728.0 437 73.7
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 4.4e-208 728.0 437 73.7
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 4.4e-208 728.0 436 74.3
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 4.4e-208 728.0 423 75.4
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 9.8e-208 726.9 429 74.6
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 3.7e-207 724.9 423 75.9
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 3.7e-207 724.9 423 74.9
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 3.7e-207 724.9 444 73.4
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 8.3e-207 723.8 440 73.2
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 1.4e-206 723.0 423 74.9
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 2.4e-206 722.2 424 76.7
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 9.2e-206 720.3 473 70.4
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 1.0e-204 716.8 450 70.7
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 2.9e-204 715.3 424 73.8
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 3.8e-204 714.9 423 75.2
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 6.6e-204 714.1 423 73.5
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.5e-203 712.2 423 74.9
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 7.3e-203 710.7 423 73.8
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 9.5e-203 710.3 423 74.5
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 9.5e-203 710.3 423 74.5
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 1.2e-202 709.9 434 71.0
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.6e-202 709.5 417 75.8
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 2.8e-202 708.8 427 74.7
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 3.6e-202 708.4 430 73.0
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 3.6e-202 708.4 445 71.0
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 1.4e-201 706.4 425 73.2
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 1.4e-201 706.4 449 69.9
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.8e-201 706.1 453 70.9
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 3.0e-201 705.3 426 73.0
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 3.0e-201 705.3 426 73.0
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 5.2e-201 704.5 437 70.7
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 5.2e-201 704.5 423 73.8
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 5.2e-201 704.5 445 71.0
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 1.5e-200 703.0 450 69.6
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 2.0e-200 702.6 445 70.8
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 4.4e-200 701.4 449 69.0
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 4.4e-200 701.4 435 70.1
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 4.4e-200 701.4 443 71.6
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 7.5e-200 700.7 443 71.6
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 1.1e-198 696.8 438 69.9
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 1.8e-198 696.0 433 72.1
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 1.8e-198 696.0 435 72.6
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 2.4e-198 695.7 438 69.9
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 4.1e-198 694.9 442 71.5
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 5.4e-198 694.5 430 72.3
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 7.0e-198 694.1 428 71.3
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 4.6e-197 691.4 380 82.4
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 4.6e-197 691.4 380 82.4
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 1.0e-196 690.3 441 70.5
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 4.0e-193 678.3 430 69.1
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 1.5e-192 676.4 420 71.7
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.9e-191 671.4 434 68.0
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 7.0e-190 667.5 379 80.7
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 2.0e-189 666.0 423 70.0
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 6.0e-189 664.5 423 69.5
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 9.5e-187 657.1 364 78.0
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 5.2e-185 651.4 460 63.7
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 8.3e-183 644.0 432 69.4
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 5.4e-182 641.3 520 58.3
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 2.7e-181 639.0 364 77.2
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 4.3e-179 631.7 378 73.8
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.6e-178 629.8 423 63.4
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 4.7e-178 628.2 422 68.7
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 1.4e-177 626.7 424 68.4
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 5.8e-176 621.3 428 69.9
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.4e-169 599.4 351 76.6
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 4.0e-169 598.6 349 76.2
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 4.0e-169 598.6 423 65.7
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 8.4e-167 590.9 423 64.3
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 3.0e-164 582.4 403 67.7
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.6e-162 576.6 325 76.9
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 3.6e-162 575.5 518 55.2
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 4.0e-161 572.0 418 62.7
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 1.6e-157 560.1 429 66.0
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 1.0e-156 557.4 432 60.2
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 3.7e-154 548.9 427 57.4
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 5.3e-145 518.5 428 56.1
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 1.6e-141 506.9 396 56.6
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 2.4e-137 493.0 321 67.0
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 2.2e-130 469.9 269 77.0
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 1.2e-128 464.2 427 53.2
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 9.7e-123 444.5 256 77.7
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 1.8e-100 370.5 216 72.2
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 5.2e-100 369.0 457 41.8
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 9.8e-83 311.6 184 73.9
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 2.1e-72 277.3 156 78.8
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 2.5e-70 270.4 424 40.6
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 7.8e-64 248.8 148 72.3
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.4e-59 233.0 377 35.3
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.3e-55 221.5 124 78.2
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 1.7e-55 221.1 132 75.8
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 6.9e-52 209.1 118 78.0
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 5.8e-51 206.1 110 80.0
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 9.3e-49 198.7 148 57.4
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 3.4e-43 180.3 111 73.0
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 4.5e-43 179.9 185 54.6
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 8.4e-42 175.6 185 49.2
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 5.8e-35 152.9 110 63.6
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 6.1e-16 89.7 60 63.3
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 3.0e-15 87.4 54 66.7
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 9.4e-09 65.9 41 63.4


User provided reference genes

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