Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 2.1e-211 738.8 387 100.0
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 6.0e-198 694.1 373 97.9
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 3.4e-124 449.1 373 64.3
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 2.9e-123 446.0 340 67.6
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 1.2e-116 424.1 348 63.2
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 1.1e-114 417.5 344 63.4
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 1.6e-110 403.7 341 60.7
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 8.1e-110 401.4 340 59.1
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 3.1e-109 399.4 339 62.2
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 3.1e-109 399.4 343 60.6
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 5.2e-109 398.7 341 60.7
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 1.3e-104 384.0 343 58.9
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 5.1e-104 382.1 340 57.9
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 1.2e-102 377.5 340 56.5
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 8.1e-102 374.8 342 56.1
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 1.4e-101 374.0 340 56.2
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 2.6e-100 369.8 341 57.8
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 7.6e-100 368.2 344 55.8
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 8.4e-99 364.8 343 55.1
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 2.4e-98 363.2 341 56.3
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.2e-97 360.9 344 54.4
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 6.0e-97 358.6 342 54.4
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 6.0e-97 358.6 342 54.4
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 6.0e-97 358.6 342 54.4
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 6.0e-97 358.6 342 54.4
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 7.8e-97 358.2 343 58.0
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 7.8e-97 358.2 340 55.0
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 1.3e-96 357.5 340 55.3
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 4.7e-94 349.0 344 54.9
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 3.1e-93 346.3 385 50.1
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 4.4e-92 342.4 341 54.3
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 9.9e-92 341.3 340 52.9
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 2.4e-90 336.7 344 52.9
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 3.5e-89 332.8 320 55.0
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 1.0e-88 331.3 367 49.0
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 3.0e-88 329.7 343 52.8
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 3.9e-88 329.3 340 50.9
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 1.5e-87 327.4 340 52.4
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 3.3e-87 326.2 343 51.9
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 7.3e-87 325.1 343 51.9
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 8.1e-86 321.6 343 51.6
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 6.9e-85 318.5 343 51.6
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 2.6e-84 316.6 343 50.4
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 4.5e-84 315.8 340 49.4
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 9.9e-84 314.7 340 49.7
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 9.9e-84 314.7 343 48.1
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 1.4e-82 310.8 333 51.1
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 2.4e-82 310.1 340 47.6
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 3.2e-82 309.7 340 50.9
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 4.2e-82 309.3 343 47.5
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 5.4e-82 308.9 344 48.8
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 3.9e-80 302.8 344 48.5
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 6.7e-80 302.0 340 46.5
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 6.7e-80 302.0 340 46.5
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 8.7e-80 301.6 340 47.4
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 2.8e-78 296.6 323 48.6
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 2.8e-78 296.6 340 47.9
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 6.2e-78 295.4 338 46.7
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 8.1e-78 295.0 340 49.7
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 1.5e-76 290.8 340 46.5
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 1.3e-75 287.7 350 46.6
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 6.4e-75 285.4 342 45.9
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 1.9e-74 283.9 311 50.2
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 1.9e-74 283.9 342 47.1
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 9.3e-74 281.6 319 47.3
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 3.0e-72 276.6 341 48.1
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 6.7e-72 275.4 329 47.7
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 4.8e-70 269.2 341 41.9
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 8.2e-70 268.5 322 45.3
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 4.0e-69 266.2 344 43.3
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 5.3e-69 265.8 346 43.1
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 5.3e-69 265.8 318 44.7
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 5.3e-69 265.8 318 45.0
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 1.2e-68 264.6 345 42.3
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 1.0e-67 261.5 329 43.2
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 1.0e-67 261.5 329 43.2
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 1.0e-67 261.5 329 43.2
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 1.1e-66 258.1 344 43.9
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 1.1e-66 258.1 323 45.5
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 3.2e-66 256.5 341 42.8
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 6.0e-65 252.3 330 41.2
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 6.0e-65 252.3 330 41.2
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 1.0e-64 251.5 244 54.9
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 1.5e-63 247.7 334 41.0
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 1.9e-63 247.3 311 45.0
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 9.7e-63 245.0 312 44.9
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 2.2e-62 243.8 284 46.8
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 2.8e-62 243.4 342 41.2
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 5.3e-61 239.2 332 42.5
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 9.0e-61 238.4 386 38.1
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 2.6e-60 236.9 321 45.8
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 1.1e-58 231.5 343 36.4
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 3.6e-57 226.5 309 42.7
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 8.2e-54 215.3 342 40.1
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 1.8e-53 214.2 208 50.5
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 2.6e-52 210.3 285 42.8
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 2.9e-51 206.8 314 39.8
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 1.1e-50 204.9 281 42.0
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 9.4e-50 201.8 346 38.2
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 1.2e-49 201.4 343 35.0
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 2.0e-47 194.1 341 38.1
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 8.2e-46 188.7 278 39.2
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 1.4e-40 171.4 334 33.2
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 2.0e-39 167.5 346 33.5
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 2.6e-39 167.2 242 40.9
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 1.4e-37 161.4 328 36.0
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 3.1e-37 160.2 323 35.0
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 2.2e-35 154.1 190 45.3
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 2.6e-31 140.6 131 51.9
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 4.4e-31 139.8 292 29.1
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 3.7e-30 136.7 212 35.8
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 3.1e-29 133.7 179 43.0
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 1.2e-28 131.7 211 35.1
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 5.0e-27 126.3 145 41.4
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 5.5e-26 122.9 270 28.9
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 1.2e-23 115.2 92 55.4
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 2.0e-20 104.4 84 56.0
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 3.0e-16 90.5 146 34.9
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 8.9e-16 89.0 109 40.4
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 8.9e-16 89.0 109 40.4
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 2.6e-15 87.4 108 40.7
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 7.5e-15 85.9 108 38.9
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 7.5e-15 85.9 109 38.5
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 7.5e-15 85.9 108 38.9
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 2.8e-14 84.0 108 40.7
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 3.2e-13 80.5 117 38.5
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 5.4e-13 79.7 61 59.0
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 5.9e-12 76.3 106 37.7
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 5.9e-12 76.3 106 37.7
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 1.0e-11 75.5 97 39.2
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 1.1e-10 72.0 93 39.8
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 2.8e-09 67.4 146 27.4
Glyma.19G163100 Glycine max HOM05D005574 ORTHO05D214454 8.9e-08 62.4 45 64.4
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 9.8e-07 58.9 74 40.5


User provided reference genes

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