Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 1.3e-260 902.5 438 100.0
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 7.7e-250 866.7 462 93.1
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 2.1e-199 699.1 441 78.9
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 4.7e-199 698.0 441 78.7
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 1.1e-198 696.8 444 78.8
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 1.4e-198 696.4 442 79.4
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 2.3e-198 695.7 442 79.4
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 1.3e-196 689.9 439 78.8
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 1.1e-195 686.8 443 77.7
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 1.2e-194 683.3 445 77.8
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 4.0e-190 668.3 382 84.3
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 2.5e-176 622.5 466 67.0
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 4.3e-176 621.7 362 83.1
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 1.1e-174 617.1 395 73.7
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 1.8e-174 616.3 378 77.2
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 1.8e-174 616.3 461 67.9
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 3.1e-174 615.5 395 74.2
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 4.0e-174 615.1 395 73.9
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 2.0e-173 612.8 392 74.7
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 1.3e-172 610.1 391 74.2
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 3.8e-172 608.6 406 71.7
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 4.9e-172 608.2 395 72.2
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 1.1e-171 607.1 461 66.2
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 1.1e-171 607.1 333 87.4
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 2.4e-171 605.9 378 76.5
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 4.2e-171 605.1 394 71.8
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 5.4e-171 604.7 448 66.7
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 1.2e-170 603.6 471 65.4
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 2.1e-170 602.8 453 68.4
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 2.1e-170 602.8 403 72.2
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 4.6e-170 601.7 399 72.2
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 4.6e-170 601.7 378 75.1
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 6.0e-170 601.3 448 65.8
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 1.7e-169 599.7 448 66.1
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 2.3e-169 599.4 378 76.2
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 6.6e-169 597.8 378 74.3
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 2.1e-167 592.8 378 73.3
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 3.6e-167 592.0 378 74.9
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 6.2e-167 591.3 403 70.5
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 1.1e-166 590.5 454 65.2
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 1.8e-166 589.7 455 66.6
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 6.9e-166 587.8 401 72.3
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 3.4e-165 585.5 452 65.7
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 9.9e-165 583.9 454 64.3
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.4e-163 580.1 401 71.6
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.9e-163 579.7 453 64.2
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 4.2e-163 578.6 453 64.5
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 7.1e-163 577.8 421 68.4
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 7.1e-163 577.8 388 70.6
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 7.1e-163 577.8 433 65.1
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.6e-162 576.6 449 65.5
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 2.1e-162 576.2 435 65.3
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 3.5e-162 575.5 363 74.4
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 6.0e-162 574.7 421 67.5
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 7.9e-162 574.3 385 72.2
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 1.3e-161 573.5 407 69.0
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 1.1e-160 570.5 404 68.1
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 2.5e-160 569.3 493 60.4
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 4.3e-160 568.5 407 68.6
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 8.1e-159 564.3 396 68.4
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 1.1e-158 563.9 452 63.7
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 1.8e-158 563.1 390 69.2
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.8e-158 563.1 410 69.3
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 3.1e-158 562.4 450 63.3
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 4.0e-158 562.0 379 70.2
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 2.0e-157 559.7 379 70.2
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 7.6e-157 557.8 380 72.9
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 2.2e-156 556.2 445 63.8
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 4.9e-156 555.1 380 69.5
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 4.9e-156 555.1 449 64.4
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 1.4e-155 553.5 379 69.4
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 5.5e-155 551.6 380 70.0
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 5.5e-155 551.6 385 68.8
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 5.5e-155 551.6 385 69.9
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 7.1e-155 551.2 379 69.9
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 1.2e-154 550.4 391 67.8
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 2.1e-154 549.7 385 67.0
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 1.8e-153 546.6 329 77.5
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 2.3e-153 546.2 400 67.0
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 1.1e-152 543.9 381 68.0
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 5.6e-152 541.6 385 67.0
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 1.3e-151 540.4 380 68.2
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 6.2e-151 538.1 506 55.5
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 3.1e-150 535.8 455 59.8
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 6.9e-150 534.6 406 67.0
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 2.9e-148 529.3 402 63.7
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 2.1e-146 523.1 362 68.0
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 4.6e-146 521.9 359 70.2
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 4.6e-146 521.9 404 63.6
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 2.0e-141 506.5 376 67.6
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 5.1e-137 491.9 371 66.3
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 2.5e-136 489.6 393 61.3
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.8e-134 483.4 405 61.2
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 4.5e-133 478.8 316 70.9
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 1.7e-132 476.9 359 65.5
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 6.5e-132 474.9 431 56.8
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 3.9e-129 465.7 378 61.1
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 3.5e-125 452.6 381 60.9
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 1.5e-123 447.2 279 74.6
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 3.9e-121 439.1 392 57.9
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 3.3e-120 436.0 381 58.8
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 2.9e-116 422.9 355 57.7
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 9.4e-115 417.9 422 53.8
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.1e-110 404.4 429 52.4
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 2.4e-110 403.3 256 75.4
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 3.8e-108 396.0 207 91.3
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 2.5e-99 366.7 262 68.7
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 5.6e-91 339.0 212 72.6
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 7.3e-91 338.6 278 62.9
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 1.2e-85 321.2 229 71.6
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 2.3e-84 317.0 290 57.6
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 2.3e-84 317.0 384 44.3
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 8.6e-84 315.1 357 47.6
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 2.1e-77 293.9 378 42.3
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 1.5e-75 287.7 170 81.2
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 3.1e-73 280.0 177 77.4
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 2.4e-70 270.4 238 58.8
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 5.4e-70 269.2 279 47.7
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 5.1e-68 262.7 239 56.5
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.6e-66 257.7 238 56.7
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 8.1e-66 255.4 312 47.1
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 3.1e-57 226.9 168 63.1
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 5.4e-54 216.1 145 73.1
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 2.3e-52 210.7 292 43.2
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 3.9e-44 183.3 243 44.4
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 1.9e-38 164.5 94 80.9
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 1.9e-35 154.5 87 79.3
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.0e-31 142.1 220 42.7
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 5.5e-30 136.3 75 85.3
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 2.3e-28 131.0 137 51.1
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 1.6e-26 124.8 130 54.6
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 1.1e-25 122.1 361 31.0
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 2.2e-23 114.4 67 82.1
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 1.8e-20 104.8 124 43.5
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.2e-16 92.0 69 62.3
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 5.5e-14 83.2 71 60.6
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 9.4e-14 82.4 63 63.5
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 2.4e-09 67.8 84 44.0
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 7.7e-08 62.8 49 65.3
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 5.0e-07 60.1 77 40.3
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 6.5e-07 59.7 36 72.2
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 6.5e-07 59.7 37 64.9


User provided reference genes

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