Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 1.3e-180 636.3 325 100.0
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 4.8e-180 634.4 325 99.7
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 7.7e-146 520.8 324 79.0
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 1.6e-143 513.1 324 77.8
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 2.7e-143 512.3 324 78.4
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 2.4e-139 499.2 324 75.9
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 1.1e-136 490.3 324 74.7
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 3.6e-135 485.3 325 76.6
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 1.4e-131 473.4 324 71.6
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 3.1e-131 472.2 324 71.6
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 1.2e-130 470.3 324 71.3
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 4.5e-130 468.4 325 70.8
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 1.7e-129 466.5 326 70.6
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 6.5e-129 464.5 324 70.1
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 2.5e-128 462.6 325 71.7
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 5.5e-128 461.5 324 68.5
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 4.7e-127 458.4 325 69.2
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 4.0e-126 455.3 325 69.8
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 6.7e-126 454.5 326 69.3
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 8.8e-126 454.1 365 64.9
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 1.1e-125 453.8 324 66.0
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 1.5e-125 453.4 324 68.2
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 2.6e-125 452.6 325 69.8
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 3.3e-125 452.2 325 69.8
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 4.4e-125 451.8 324 70.1
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 4.4e-125 451.8 327 69.1
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 5.7e-125 451.4 324 70.1
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 7.5e-125 451.1 325 69.2
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 2.8e-124 449.1 327 69.4
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 3.7e-124 448.7 325 66.8
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 6.3e-124 448.0 331 68.6
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 4.1e-123 445.3 364 60.2
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.0e-121 440.7 339 66.1
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 1.7e-121 439.9 324 66.4
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 1.7e-121 439.9 328 66.8
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 5.5e-120 434.9 324 64.8
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 7.2e-120 434.5 326 67.2
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.1e-119 433.0 324 67.0
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 6.1e-119 431.4 326 65.0
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 1.4e-118 430.3 325 65.5
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.8e-118 429.9 324 66.0
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 5.2e-118 428.3 325 64.3
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 6.8e-118 427.9 324 67.3
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 2.0e-117 426.4 325 61.5
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 2.6e-117 426.0 324 63.9
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.4e-117 425.6 325 65.2
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 4.4e-117 425.2 324 66.4
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.4e-117 425.2 325 65.2
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 7.5e-117 424.5 324 64.2
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.3e-116 423.7 324 63.9
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 2.8e-116 422.5 324 63.3
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 1.8e-115 419.9 324 63.6
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 2.4e-115 419.5 325 66.8
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 2.7e-114 416.0 324 64.2
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 1.7e-113 413.3 338 60.1
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 1.7e-113 413.3 324 62.7
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 6.5e-113 411.4 325 64.6
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 6.5e-113 411.4 380 55.0
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.1e-112 410.6 307 66.1
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 1.5e-112 410.2 342 60.8
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 1.5e-112 410.2 324 63.9
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.9e-112 409.8 325 64.3
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 2.5e-112 409.5 329 62.3
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 5.5e-112 408.3 325 60.3
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 9.4e-112 407.5 325 64.0
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 4.7e-111 405.2 307 64.8
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 6.1e-111 404.8 324 63.3
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 3.0e-110 402.5 324 61.4
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 6.8e-110 401.4 324 61.7
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.5e-109 400.2 324 62.0
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 4.4e-109 398.7 324 61.4
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 5.7e-109 398.3 324 61.4
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 5.7e-109 398.3 393 53.7
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 9.8e-109 397.5 325 62.8
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 9.8e-109 397.5 325 62.8
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 1.8e-107 393.3 324 58.0
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 2.4e-107 392.9 325 61.2
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 4.1e-107 392.1 334 60.2
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 7.0e-107 391.3 326 61.7
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 7.0e-107 391.3 324 58.0
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 9.2e-107 391.0 326 62.0
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 1.2e-106 390.6 334 59.9
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 5.9e-106 388.3 324 62.0
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 7.7e-106 387.9 309 61.8
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 1.0e-105 387.5 326 60.4
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 5.0e-105 385.2 326 59.8
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 3.3e-104 382.5 350 56.0
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 5.6e-104 381.7 309 62.1
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 3.6e-103 379.0 369 55.0
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 8.0e-103 377.9 360 55.8
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.5e-101 373.6 315 59.4
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 7.5e-101 371.3 328 61.0
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 1.7e-100 370.2 327 57.8
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 8.3e-100 367.9 326 57.1
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.3e-97 360.5 328 55.2
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 8.6e-97 357.8 362 52.2
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 3.3e-96 355.9 324 58.0
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 5.6e-96 355.1 284 62.7
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 7.3e-96 354.8 326 55.2
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.2e-95 354.0 327 56.3
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.6e-95 353.6 327 55.7
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 6.8e-94 348.2 327 54.7
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 1.7e-92 343.6 324 57.4
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.2e-92 343.2 285 61.8
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 3.2e-91 339.3 252 65.5
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 5.4e-91 338.6 302 60.6
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 2.7e-90 336.3 216 73.6
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 5.0e-89 332.0 325 53.2
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 6.6e-89 331.6 346 49.4
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 8.6e-89 331.3 362 48.1
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 1.5e-88 330.5 324 50.0
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 7.3e-88 328.2 329 50.5
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 1.6e-87 327.0 325 50.8
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.1e-87 326.6 269 61.0
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 5.4e-83 312.0 235 64.3
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.2e-76 290.0 326 52.5
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 4.1e-75 285.8 327 51.1
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 2.5e-72 276.6 308 48.4
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 1.4e-70 270.8 261 52.9
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.4e-70 270.0 294 52.0
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 4.0e-70 269.2 210 66.7
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 9.9e-69 264.6 324 44.1
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 8.4e-68 261.5 171 73.1
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.1e-67 261.2 324 46.6
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 1.2e-66 257.7 290 51.4
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 1.2e-66 257.7 211 62.1
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 6.0e-66 255.4 247 49.8
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 6.7e-57 225.3 145 75.9
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 4.0e-54 216.1 174 58.6
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 1.6e-50 204.1 145 70.3
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.3e-48 196.1 248 46.4
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 5.6e-48 195.7 164 62.8
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 5.6e-48 195.7 165 61.2
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.1e-47 193.7 164 59.8
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 9.3e-43 178.3 151 57.0
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 2.7e-42 176.8 301 37.2
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 3.5e-42 176.4 309 35.6
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 1.8e-41 174.1 128 64.8
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.8e-38 164.1 152 56.6
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 1.9e-35 154.1 122 63.9
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 1.3e-31 141.4 219 34.7
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 6.9e-30 135.6 120 59.2
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 2.0e-29 134.0 309 30.1
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 1.3e-28 131.3 215 32.6
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 1.4e-27 127.9 84 72.6
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 1.4e-27 127.9 111 58.6
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 1.4e-27 127.9 120 51.7
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 3.7e-23 113.2 61 100.0
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 7.7e-21 105.5 86 62.8
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.8e-20 103.2 120 48.3
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 6.5e-20 102.4 76 65.8
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 1.4e-19 101.3 76 65.8
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 1.4e-19 101.3 76 65.8
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 1.0e-17 95.1 96 58.3
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.8e-15 87.0 66 63.6
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 8.2e-15 85.5 79 54.4
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 2.4e-14 84.0 61 72.1
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 5.0e-12 76.3 59 69.5
arahy.Tifrunner.gnm1.ann1.G80LMI Arachis hypogaea HOM05D004457 ORTHO05D082520 6.1e-10 69.3 40 85.0
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 8.8e-09 65.5 54 64.8


User provided reference genes

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