Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 3.9e-128 461.5 231 100.0
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 4.3e-127 458.0 231 99.1
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 5.7e-127 457.6 231 98.7
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 1.8e-85 319.7 232 72.4
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 9.1e-85 317.4 233 72.5
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 5.9e-84 314.7 235 72.3
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 1.1e-82 310.5 231 71.4
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 3.0e-80 302.4 234 70.1
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 3.1e-77 292.4 235 67.2
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 7.0e-77 291.2 240 65.0
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 4.5e-76 288.5 231 66.2
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 2.8e-73 279.3 232 65.1
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 6.1e-73 278.1 233 65.2
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 6.1e-73 278.1 233 65.2
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 2.3e-72 276.2 183 76.5
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 1.2e-71 273.9 231 64.9
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 1.5e-71 273.5 227 63.9
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 3.4e-71 272.3 230 64.8
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 1.3e-70 270.4 232 63.4
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 4.1e-69 265.4 156 83.3
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 7.0e-69 264.6 222 64.9
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 2.7e-68 262.7 190 70.0
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 4.6e-68 261.9 225 64.9
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 4.6e-68 261.9 229 65.9
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 6.0e-68 261.5 185 72.4
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 7.8e-68 261.2 233 61.8
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 7.8e-68 261.2 184 72.8
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 7.8e-68 261.2 228 63.2
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 7.8e-68 261.2 225 62.2
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 1.3e-67 260.4 185 71.9
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 3.9e-67 258.8 193 69.9
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 3.9e-67 258.8 160 78.8
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 5.0e-67 258.5 241 61.0
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 6.6e-67 258.1 225 64.9
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 2.5e-66 256.1 205 68.8
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 2.5e-66 256.1 205 68.8
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 3.3e-66 255.8 205 68.8
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 5.6e-66 255.0 202 69.8
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 1.2e-65 253.8 228 63.2
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 1.2e-65 253.8 154 78.6
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 2.8e-65 252.7 235 61.3
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 3.6e-65 252.3 232 62.5
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 4.7e-65 251.9 151 81.5
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 8.0e-65 251.1 157 79.0
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 1.1e-64 250.8 153 79.7
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 2.3e-64 249.6 225 64.4
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 3.1e-64 249.2 220 63.2
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 6.8e-64 248.1 161 78.3
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 2.0e-63 246.5 159 78.0
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 4.4e-63 245.4 159 78.6
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 9.8e-63 244.2 237 57.8
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 1.3e-62 243.8 156 77.6
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 2.2e-62 243.0 230 60.4
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 2.2e-62 243.0 136 84.6
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 4.9e-62 241.9 226 61.1
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 6.4e-62 241.5 185 69.2
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 1.4e-61 240.4 153 79.1
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 1.4e-61 240.4 192 65.6
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 1.9e-61 240.0 167 73.7
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 2.4e-61 239.6 131 87.0
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 2.4e-61 239.6 223 61.9
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 2.4e-61 239.6 223 61.4
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 3.2e-61 239.2 225 60.0
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 9.2e-61 237.7 157 72.6
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 9.2e-61 237.7 223 59.6
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 9.2e-61 237.7 165 71.5
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 1.2e-60 237.3 161 73.3
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 1.6e-60 236.9 166 72.9
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 2.1e-60 236.5 153 78.4
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 3.5e-60 235.7 186 65.6
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 4.6e-60 235.3 158 73.4
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 1.0e-59 234.2 193 63.7
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 1.0e-59 234.2 163 71.8
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 1.0e-59 234.2 163 71.8
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 1.0e-59 234.2 177 70.1
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.9e-59 232.3 228 60.1
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 5.1e-59 231.9 178 66.9
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 6.6e-59 231.5 182 67.6
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 6.6e-59 231.5 192 64.6
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 8.6e-59 231.1 163 72.4
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 8.6e-59 231.1 228 57.5
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 1.1e-58 230.7 205 62.0
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 1.1e-58 230.7 176 67.6
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 1.9e-58 229.9 219 58.0
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 2.5e-58 229.6 201 61.2
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 2.5e-58 229.6 251 57.0
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 3.3e-58 229.2 184 65.8
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 3.3e-58 229.2 190 64.7
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 4.3e-58 228.8 211 59.2
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 4.3e-58 228.8 211 59.2
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 4.3e-58 228.8 211 59.2
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 7.3e-58 228.0 172 69.2
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 7.3e-58 228.0 148 73.6
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 1.6e-57 226.9 124 85.5
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 3.6e-57 225.7 133 82.7
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 4.7e-57 225.3 131 82.4
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 1.1e-56 224.2 149 74.5
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 1.8e-56 223.4 172 66.3
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 1.8e-56 223.4 205 61.0
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 1.8e-56 223.4 191 61.8
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 2.3e-56 223.0 166 68.1
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 3.4e-55 219.2 123 83.7
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 3.4e-55 219.2 131 80.2
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 9.9e-55 217.6 131 78.6
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 9.9e-55 217.6 131 78.6
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 3.7e-54 215.7 216 55.6
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 4.9e-54 215.3 198 57.1
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 4.1e-53 212.2 195 61.5
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 9.2e-53 211.1 125 80.0
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 2.7e-52 209.5 183 62.8
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 7.8e-52 208.0 191 56.0
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 8.6e-51 204.5 118 80.5
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 2.6e-47 193.0 161 60.9
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 5.8e-47 191.8 149 66.4
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.9e-45 186.8 150 60.0
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 3.2e-45 186.0 129 67.4
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 7.1e-45 184.9 127 69.3
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.7e-43 180.3 150 57.3
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.7e-43 180.3 150 57.3
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 5.1e-43 178.7 148 56.1
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 1.9e-42 176.8 175 58.3
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 7.6e-39 164.9 167 56.9
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 1.4e-32 144.1 129 58.1
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 5.3e-32 142.1 77 87.0
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 1.7e-30 137.1 118 61.0
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 1.9e-26 123.6 137 49.6
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 3.3e-26 122.9 85 75.3
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 1.4e-21 107.5 139 43.2
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 9.3e-21 104.8 120 46.7
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 1.9e-18 97.1 55 81.8
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 1.3e-17 94.4 59 72.9
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 8.2e-17 91.7 57 75.4
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 5.8e-15 85.5 49 79.6
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 1.3e-14 84.3 103 46.6
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 2.9e-14 83.2 63 73.0
Cpa.g.sc2.250 Carica papaya HOM05D005836 ORTHO05D007335 5.5e-13 79.0 102 52.0
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 1.2e-12 77.8 50 72.0
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 2.5e-10 70.1 46 65.2
BcaB01g04538 Brassica carinata HOM05D005836 ORTHO05D007335 2.2e-09 67.0 33 90.9
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 1.3e-06 57.8 74 45.9


User provided reference genes

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