Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 1.5e-215 752.7 413 100.0
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 3.9e-211 738.0 429 96.3
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 4.6e-196 688.0 414 89.9
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 5.1e-195 684.5 414 88.2
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 1.5e-194 682.9 414 86.2
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 4.5e-191 671.4 413 86.7
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 7.6e-191 670.6 412 89.3
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 3.2e-189 665.2 416 83.7
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 6.7e-187 657.5 414 87.0
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 2.0e-183 646.0 413 80.9
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 2.5e-178 629.0 414 80.0
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 5.7e-178 627.9 418 79.7
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 1.6e-177 626.3 418 79.4
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.6e-177 626.3 417 77.7
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 2.8e-177 625.5 417 79.4
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 4.8e-177 624.8 418 78.9
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 1.1e-176 623.6 418 78.9
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 1.1e-176 623.6 413 79.4
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.1e-176 622.1 418 79.2
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 3.1e-176 622.1 418 78.5
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 4.1e-176 621.7 418 78.0
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 9.0e-176 620.5 419 76.8
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 9.0e-176 620.5 418 78.9
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.2e-175 620.2 417 77.0
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 2.6e-175 619.0 418 78.0
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.3e-174 616.7 426 77.7
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 2.9e-174 615.5 413 78.0
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 2.9e-174 615.5 419 78.0
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 6.5e-174 614.4 419 77.1
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 2.5e-173 612.5 419 77.3
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 9.3e-173 610.5 419 77.3
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 1.6e-172 609.8 415 77.8
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 2.7e-172 609.0 418 78.0
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 3.5e-172 608.6 417 76.3
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 3.5e-172 608.6 421 76.5
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 1.3e-171 606.7 418 78.0
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 3.9e-171 605.1 414 77.3
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 6.7e-171 604.4 415 76.9
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 8.7e-171 604.0 415 76.6
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 3.3e-170 602.1 423 76.1
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 9.7e-170 600.5 414 77.3
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 2.2e-169 599.4 416 75.7
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 2.2e-169 599.4 414 76.3
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 2.8e-169 599.0 421 75.1
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 3.7e-169 598.6 417 76.3
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 3.7e-169 598.6 415 74.7
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 3.7e-169 598.6 412 76.2
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 1.1e-168 597.0 416 75.2
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 1.1e-168 597.0 430 75.6
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 1.1e-168 597.0 418 77.3
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 1.1e-168 597.0 410 75.9
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.4e-168 596.7 418 75.4
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 1.8e-168 596.3 414 76.3
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 2.4e-168 595.9 416 77.6
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.1e-168 595.5 418 75.1
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 9.0e-168 594.0 414 76.1
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 9.0e-168 594.0 418 79.9
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 1.2e-167 593.6 419 75.7
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 1.2e-167 593.6 418 75.8
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.2e-167 593.6 429 75.5
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.2e-167 593.6 429 75.5
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 2.6e-167 592.4 417 75.8
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 3.4e-167 592.0 436 73.6
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 3.4e-167 592.0 421 75.8
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 5.9e-167 591.3 415 76.6
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 5.9e-167 591.3 418 74.6
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 7.7e-167 590.9 415 76.6
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 1.7e-166 589.7 418 75.1
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 5.0e-166 588.2 417 73.9
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 5.0e-166 588.2 417 74.3
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 2.5e-165 585.9 414 74.4
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 4.2e-165 585.1 414 75.6
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 4.2e-165 585.1 414 75.1
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 7.2e-165 584.3 414 74.4
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 9.4e-165 583.9 449 72.2
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.2e-164 583.6 416 74.0
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.1e-164 582.8 449 71.9
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 4.6e-164 581.6 415 74.2
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 4.6e-164 581.6 415 75.4
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 4.6e-164 581.6 455 70.3
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 1.5e-162 576.6 418 72.7
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 2.0e-162 576.2 418 73.2
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 2.5e-162 575.9 424 73.6
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 2.5e-162 575.9 424 71.7
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 3.3e-162 575.5 420 73.8
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 4.3e-162 575.1 424 73.1
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 9.7e-162 573.9 431 71.2
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 8.2e-161 570.9 416 73.6
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.1e-160 568.9 413 72.9
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 3.4e-159 565.5 420 73.3
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 5.9e-159 564.7 417 71.0
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.9e-158 562.4 415 72.3
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 5.0e-158 561.6 429 70.9
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 6.5e-158 561.2 416 72.1
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.1e-157 560.5 415 72.3
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 1.1e-157 560.5 348 84.2
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 3.3e-154 548.9 366 79.2
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 4.4e-154 548.5 418 70.8
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 3.1e-152 542.3 369 77.2
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 3.1e-152 542.3 369 77.2
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 1.2e-151 540.4 344 81.1
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 2.9e-150 535.8 421 68.4
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 2.7e-148 529.3 397 71.5
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 3.8e-142 508.8 483 61.3
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 3.8e-142 508.8 483 61.3
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 6.5e-142 508.1 419 67.3
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 2.6e-138 496.1 421 66.0
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 4.4e-138 495.4 322 78.6
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 1.3e-137 493.8 342 74.3
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 9.1e-136 487.6 418 65.3
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 4.0e-131 472.2 334 73.7
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 8.8e-131 471.1 420 58.8
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 8.0e-124 448.0 424 55.0
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 2.9e-113 412.9 428 57.0
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 1.3e-110 404.1 384 56.5
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 3.6e-108 396.0 279 74.2
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 5.8e-106 388.7 412 56.6
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 8.6e-102 374.8 344 62.5
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 2.6e-98 363.2 324 63.3
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.0e-94 351.3 370 57.8
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 8.7e-86 321.6 317 54.6
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 7.6e-82 308.5 415 44.8
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.4e-80 304.3 250 65.2
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 7.6e-74 282.0 421 40.6
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.8e-67 260.8 473 37.8
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 3.8e-65 253.1 469 36.0
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.4e-59 233.8 130 84.6
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.9e-57 226.9 332 41.9
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 6.1e-55 219.2 134 81.3
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.1e-51 208.4 322 40.4
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 8.8e-46 188.7 104 86.5
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 1.1e-45 188.3 343 35.0
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.4e-45 186.4 111 81.1
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 6.3e-44 182.6 362 34.5
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 7.2e-40 169.1 109 78.0
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.2e-34 151.8 137 59.1
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 5.0e-33 146.4 98 75.5
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 5.9e-26 122.9 129 54.3
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 2.5e-24 117.5 65 89.2
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 7.2e-24 115.9 159 45.9
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 9.4e-24 115.5 99 58.6
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 6.8e-22 109.4 128 53.9
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 1.0e-17 95.5 67 80.6
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 8.5e-17 92.4 63 73.0
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 5.5e-16 89.7 65 69.2
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 4.9e-12 76.6 107 43.9
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 8.3e-12 75.9 96 54.2
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 7.8e-10 69.3 50 66.0
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 2.9e-09 67.4 103 36.9
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 3.8e-09 67.0 52 63.5
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 1.1e-08 65.5 44 79.5
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.9e-08 64.7 41 78.0
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 5.6e-08 63.2 51 66.7
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 6.1e-07 59.7 36 77.8
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 6.1e-07 59.7 36 77.8
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 6.1e-07 59.7 36 77.8
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 8.0e-07 59.3 43 67.4


User provided reference genes

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