Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 0.0e+00 1862.4 1038 100.0
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 0.0e+00 1800.0 1041 94.9
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 0.0e+00 1141.7 946 66.0
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 0.0e+00 1129.8 947 65.8
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 0.0e+00 1128.2 955 67.4
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 0.0e+00 1101.7 952 67.5
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 0.0e+00 1097.4 962 63.4
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 0.0e+00 1095.5 953 63.6
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 0.0e+00 1077.8 951 61.9
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 0.0e+00 1076.6 943 61.2
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 6.4e-311 1070.8 946 65.0
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 9.2e-310 1067.0 951 64.5
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 1.0e-308 1063.5 948 65.9
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 2.5e-307 1058.9 964 60.6
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 5.2e-305 1051.2 966 59.5
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 7.5e-304 1047.3 959 59.5
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 1.3e-303 1046.6 973 59.9
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 1.7e-303 1046.2 954 60.8
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 1.4e-302 1043.1 959 63.8
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 1.1e-299 1033.5 953 59.7
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 1.1e-299 1033.5 963 59.6
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 4.3e-299 1031.6 962 59.1
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 1.1e-297 1026.9 955 59.8
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 2.6e-296 1022.3 971 58.6
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 1.7e-295 1019.6 954 61.9
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 6.4e-295 1017.7 966 59.2
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 8.3e-295 1017.3 975 57.8
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 8.3e-295 1017.3 952 59.7
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 1.1e-294 1016.9 950 58.8
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 1.4e-294 1016.5 942 61.9
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 5.0e-292 1008.1 962 58.6
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 1.2e-290 1003.4 956 59.4
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 2.8e-290 1002.3 966 59.5
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 6.8e-289 997.7 959 57.5
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 8.3e-287 990.7 961 56.8
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.4e-286 989.9 961 57.0
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 9.2e-286 987.3 957 58.6
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 1.2e-285 986.9 957 58.6
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.6e-285 986.5 961 56.6
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 2.7e-285 985.7 959 58.4
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 6.0e-285 984.6 961 56.5
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.0e-284 982.2 961 56.7
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 6.6e-284 981.1 959 56.9
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 2.5e-283 979.2 948 57.4
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 5.6e-283 978.0 947 56.5
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 1.8e-281 973.0 872 60.8
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 7.6e-280 967.6 955 56.6
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 3.8e-279 965.3 948 56.5
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 1.4e-278 963.4 955 55.8
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 2.3e-276 956.1 983 54.3
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 2.3e-276 956.1 973 58.9
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 3.9e-276 955.3 961 55.7
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 5.4e-270 934.9 974 55.5
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 2.1e-269 932.9 951 55.8
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 2.5e-267 926.0 979 55.5
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 4.0e-265 918.7 958 54.2
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 6.4e-263 911.4 955 54.6
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 6.0e-261 904.8 963 53.6
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 8.7e-260 901.0 976 52.2
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 1.1e-257 894.0 904 58.8
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.3e-255 887.1 840 57.4
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 4.9e-255 885.2 840 57.5
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 3.2e-254 882.5 943 57.2
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 4.2e-254 882.1 837 57.6
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 5.5e-254 881.7 857 55.7
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 4.6e-253 878.6 975 50.5
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 5.1e-252 875.2 999 49.1
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 6.9e-249 864.8 851 56.2
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 2.2e-247 859.8 846 55.1
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 1.1e-246 857.4 964 52.3
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 3.0e-244 849.4 982 49.5
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 8.7e-244 847.8 972 48.3
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 1.5e-243 847.0 969 49.1
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 1.3e-242 844.0 891 51.2
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 2.2e-242 843.2 968 48.5
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 3.7e-242 842.4 886 51.5
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 4.8e-242 842.0 872 52.4
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 4.8e-242 842.0 872 52.4
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 3.1e-241 839.3 880 52.0
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 5.3e-241 838.6 870 52.4
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 6.9e-241 838.2 947 54.2
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 4.5e-240 835.5 956 50.6
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 5.9e-240 835.1 892 51.2
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 8.8e-236 821.2 857 53.0
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 2.0e-235 820.1 872 51.0
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 4.3e-235 818.9 966 47.8
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 4.3e-235 818.9 966 47.8
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 5.7e-235 818.5 840 53.6
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 7.4e-235 818.1 875 51.1
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 5.3e-233 812.0 872 50.6
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 1.5e-232 810.4 870 51.3
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 2.7e-229 799.7 887 51.1
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 2.3e-228 796.6 707 59.8
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.5e-227 793.9 783 55.2
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 2.6e-224 783.1 797 54.0
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 1.3e-223 780.8 837 50.8
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 4.2e-222 775.8 871 49.0
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 2.2e-218 763.5 766 55.0
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 1.1e-206 724.5 994 44.9
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 6.4e-186 655.6 601 55.6
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 8.6e-183 645.2 547 60.5
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 1.9e-177 627.5 650 53.4
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 2.1e-176 624.0 553 57.5
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 2.5e-174 617.1 552 57.8
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 1.7e-146 524.6 454 74.4
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 5.3e-140 503.1 563 50.8
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 6.2e-133 479.6 479 51.6
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 9.7e-118 429.1 411 54.0
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 3.8e-114 417.2 406 52.0
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 1.8e-92 345.1 394 62.2
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 1.0e-82 312.8 426 43.9
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 1.1e-60 239.6 769 29.6
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 1.6e-56 225.7 304 41.1
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 2.1e-56 225.3 305 48.9
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 3.5e-43 181.4 189 50.3
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 5.1e-42 177.6 162 50.6
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.3e-40 172.9 451 30.4
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.3e-40 172.9 451 30.4
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 6.2e-40 170.6 451 30.4
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.1e-39 169.9 382 31.7
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 3.4e-30 138.3 486 27.8
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 8.4e-29 133.7 392 30.4
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.3e-24 119.8 319 27.9
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.9e-21 108.6 502 25.7
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 4.6e-19 101.3 464 25.4
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 3.1e-15 88.6 404 22.8
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 6.9e-15 87.4 112 49.1
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 2.0e-14 85.9 56 73.2
AagrBONN_evm.TU.Sc2ySwM_117.2839 Anthoceros agrestis HOM05D002537 ORTHO05D006869 7.9e-11 73.9 254 27.6
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 2.5e-09 68.9 130 32.3
Dinv24731 Davidia involucrata HOM05D005963 ORTHO05D006869 2.5e-09 68.9 59 61.0
Oeu063117.1 Olea europaea HOM05D003725 ORTHO05D004294 2.5e-09 68.9 150 32.7
Oeu000477.1 Olea europaea HOM05D003725 ORTHO05D004294 1.4e-07 63.2 148 31.8
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 5.3e-07 61.2 482 23.4
Zm00001eb180800 Zea mays HOM05D002537 ORTHO05D002751 5.3e-07 61.2 190 27.4
FAN07G0908 Fragaria x ananassa HOM05D002537 ORTHO05D002751 1.2e-06 60.1 122 30.3
Zm00001eb242030 Zea mays HOM05D002537 ORTHO05D002751 1.2e-06 60.1 103 35.0
FAN17G1050 Fragaria x ananassa HOM05D002537 ORTHO05D002751 1.5e-06 59.7 122 30.3
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 2.0e-06 59.3 84 38.1
Cre08.g380452 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 2.6e-06 58.9 166 26.5
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 3.4e-06 58.5 466 20.4
Pp3c12_22800 Physcomitrium patens HOM05D002537 ORTHO05D002751 4.5e-06 58.2 134 27.6
SMO367G0451 Selaginella moellendorffii HOM05D003725 ORTHO05D004294 4.5e-06 58.2 189 26.5
CSS0009758 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 5.9e-06 57.8 168 26.2
Zm00001eb084860 Zea mays HOM05D002537 ORTHO05D002751 5.9e-06 57.8 72 37.5
Zm00001eb421380 Zea mays HOM05D002537 ORTHO05D002751 5.9e-06 57.8 106 31.1
Mapoly0086s0081 Marchantia polymorpha HOM05D003725 ORTHO05D004294 7.7e-06 57.4 148 29.1


User provided reference genes

Program Settings