Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 0.0e+00 1290.8 996 100.0
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 0.0e+00 1135.6 1057 84.4
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 2.0e-51 208.8 324 50.6
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 3.9e-47 194.5 297 49.2
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 1.3e-42 179.5 658 34.7
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 2.9e-42 178.3 377 44.3
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 4.1e-41 174.5 300 46.3
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 1.2e-40 172.9 627 35.2
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 2.0e-40 172.2 643 33.0
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 2.8e-37 161.8 697 32.1
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 4.4e-35 154.5 314 42.7
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 1.0e-31 143.3 294 40.1
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 2.3e-31 142.1 680 30.3
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.6e-29 136.0 224 43.3
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 9.9e-27 126.7 505 32.5
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 2.4e-25 122.1 223 43.9
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 2.4e-25 122.1 633 28.0
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 7.1e-25 120.6 536 30.8
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 9.2e-25 120.2 223 43.5
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 3.5e-24 118.2 331 34.7
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 6.0e-24 117.5 441 32.4
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 7.8e-24 117.1 270 39.3
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 7.8e-24 117.1 286 36.4
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 1.0e-23 116.7 533 30.8
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 1.3e-23 116.3 511 29.9
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 3.0e-23 115.2 667 28.3
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 8.6e-23 113.6 365 33.7
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 1.5e-22 112.8 237 39.2
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.9e-22 112.5 467 29.6
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 3.3e-22 111.7 629 30.5
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 4.3e-22 111.3 221 40.7
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 9.6e-22 110.2 213 40.4
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 3.6e-21 108.2 508 30.9
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 4.7e-21 107.8 339 32.2
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 6.8e-20 104.0 528 29.9
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 2.0e-19 102.4 593 29.5
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 4.4e-19 101.3 460 29.6
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 1.3e-18 99.8 463 29.4
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 3.8e-18 98.2 666 28.7
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 3.8e-18 98.2 140 49.3
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 6.4e-18 97.4 436 29.1
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 1.1e-17 96.7 589 28.0
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 1.4e-17 96.3 380 33.2
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 2.4e-17 95.5 575 26.8
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 4.2e-17 94.7 423 28.6
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 9.3e-17 93.6 438 31.7
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 9.3e-17 93.6 477 28.9
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 9.3e-17 93.6 620 26.9
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.7e-16 92.0 387 28.2
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 3.5e-16 91.7 332 30.7
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 3.5e-16 91.7 575 28.2
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 4.6e-16 91.3 238 36.1
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 6.0e-16 90.9 384 27.6
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 6.0e-16 90.9 566 28.6
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 6.0e-16 90.9 394 29.7
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 7.8e-16 90.5 402 31.1
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 1.0e-15 90.1 531 28.8
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.3e-15 89.7 372 30.6
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 2.3e-15 89.0 589 28.0
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 3.0e-15 88.6 220 37.7
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 3.0e-15 88.6 314 32.8
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 3.0e-15 88.6 468 28.8
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.0e-15 88.6 433 28.9
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 3.9e-15 88.2 395 29.1
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 5.1e-15 87.8 522 27.0
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 5.1e-15 87.8 513 26.7
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 8.7e-15 87.0 628 27.4
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.1e-14 86.7 677 28.7
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.5e-14 86.3 673 29.0
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.9e-14 85.9 373 30.0
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.9e-14 85.9 334 29.0
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 2.5e-14 85.5 598 25.6
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 2.5e-14 85.5 539 26.7
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 4.3e-14 84.7 669 26.9
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 5.6e-14 84.3 261 35.2
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.3e-13 83.2 503 28.0
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 1.3e-13 83.2 456 30.0
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 2.1e-13 82.4 572 27.3
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 2.8e-13 82.0 201 36.3
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 2.8e-13 82.0 201 36.3
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 2.8e-13 82.0 536 27.4
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 4.8e-13 81.3 449 28.7
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 4.8e-13 81.3 393 28.8
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 6.2e-13 80.9 296 30.1
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 1.1e-12 80.1 387 30.0
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 1.1e-12 80.1 387 30.0
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.4e-12 79.7 324 29.3
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 1.8e-12 79.3 477 28.5
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 2.4e-12 79.0 188 38.8
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 4.0e-12 78.2 102 49.0
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 6.9e-12 77.4 410 29.5
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 9.0e-12 77.0 314 28.7
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 2.0e-11 75.9 556 25.9
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 2.6e-11 75.5 497 27.8
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 2.6e-11 75.5 449 28.5
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 3.4e-11 75.1 566 26.5
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 3.4e-11 75.1 244 32.0
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 9.9e-11 73.6 283 30.7
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 1.3e-10 73.2 541 28.7
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 3.8e-10 71.6 486 26.3
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 3.8e-10 71.6 486 26.3
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 3.8e-10 71.6 634 27.1
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 8.4e-10 70.5 589 27.7
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 1.1e-09 70.1 468 29.3
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 2.4e-09 68.9 398 25.9
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 3.2e-09 68.6 519 26.2
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 4.2e-09 68.2 624 26.0
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 4.2e-09 68.2 439 27.1
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 9.3e-09 67.0 518 27.6
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 1.6e-08 66.2 663 26.4
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 2.7e-08 65.5 94 46.8
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 4.6e-08 64.7 253 28.5
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 7.9e-08 63.9 514 26.7
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 7.9e-08 63.9 144 33.3
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.3e-07 63.2 571 27.1
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 1.3e-07 63.2 546 25.6
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 2.3e-07 62.4 445 27.4
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 3.9e-07 61.6 328 29.0
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 6.6e-07 60.8 538 26.0
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 8.7e-07 60.5 36 75.0
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 8.7e-07 60.5 45 62.2
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 1.1e-06 60.1 39 71.8
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 1.1e-06 60.1 543 25.6
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 1.5e-06 59.7 310 26.1
Ca_19739_v3 Cicer arietinum L. HOM05D002502 ORTHO05D000001 1.9e-06 59.3 166 33.7
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 2.5e-06 58.9 313 26.8
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 3.3e-06 58.5 44 63.6
Dinv25882 Davidia involucrata HOM05D016043 ORTHO05D010674 3.3e-06 58.5 36 72.2
Medtr8g008690 Medicago truncatula HOM05D004299 ORTHO05D003557 3.3e-06 58.5 39 76.9
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 4.3e-06 58.2 147 34.0
Ca_17168_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 5.6e-06 57.8 82 46.3
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 5.6e-06 57.8 515 27.6
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 7.4e-06 57.4 101 40.6
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 7.4e-06 57.4 36 75.0
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 7.4e-06 57.4 36 75.0
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 7.4e-06 57.4 40 65.0
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 9.6e-06 57.0 583 26.4


User provided reference genes

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