Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 3769.9 1929 100.0
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 2410.9 1351 93.0
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 2339.7 1277 94.2
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 2321.2 1277 93.4
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 2287.7 1975 60.8
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 2139.4 1280 84.8
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 2107.4 1281 83.5
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 2093.2 1261 83.3
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 2079.3 1262 83.0
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 2062.3 1274 82.2
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 2060.0 1262 82.8
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 2060.0 1280 81.6
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1981.8 1335 76.8
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1977.2 1279 79.1
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1964.9 1275 77.8
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1829.3 1256 74.0
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1820.8 1256 74.1
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1808.1 1258 73.8
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1807.7 1260 73.3
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1805.4 1260 72.9
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1795.8 1260 72.7
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1794.6 1270 72.3
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1791.9 1284 71.7
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1791.9 1270 72.5
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1790.8 1285 71.4
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1790.0 1285 71.0
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1789.6 1285 71.1
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1783.8 1259 71.9
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1781.5 1263 72.4
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1781.5 1256 72.5
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1771.1 1265 71.9
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1770.4 1291 70.6
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1769.6 1263 71.0
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1765.7 1261 71.7
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1760.3 1275 71.3
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1748.4 1264 71.0
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1731.5 1324 68.6
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1724.1 1279 70.1
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1715.3 1260 69.5
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1706.0 1269 70.2
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1703.0 1283 67.7
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1699.5 1268 68.1
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1697.9 1274 67.8
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1693.7 1259 67.4
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1691.0 1268 68.5
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1687.9 1289 67.6
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1686.0 1283 67.5
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1683.3 1254 69.5
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1681.8 1270 66.9
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1674.1 1262 67.4
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1670.6 1259 68.1
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1669.1 1260 67.7
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1668.3 1260 66.5
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1665.2 1282 66.5
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1664.0 1263 66.7
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1659.8 1265 67.4
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1656.0 1264 65.8
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1652.5 1321 65.0
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1647.5 1189 72.0
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1645.2 1257 66.0
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1644.8 1256 66.2
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1642.9 1261 66.1
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1641.3 1279 65.5
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1636.7 1256 67.0
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1631.3 1275 65.4
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1630.5 1332 64.6
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1630.2 1260 67.1
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1629.4 1258 67.0
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1626.7 1261 67.1
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1625.9 1250 67.5
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1620.5 1259 66.6
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1612.0 1261 66.5
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1606.7 1259 66.4
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1604.7 1275 66.0
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1604.0 1255 66.8
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1603.6 1278 65.9
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1602.0 1274 65.0
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1601.3 1255 66.7
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1591.6 1265 65.5
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1584.7 1190 68.4
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1562.4 1278 64.7
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1550.4 1191 66.8
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1540.4 1195 67.5
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1535.4 1256 63.3
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1533.1 1267 63.5
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1528.5 1322 61.3
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1507.7 1215 65.1
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1464.1 1029 72.4
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1463.7 1019 73.2
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1455.3 1259 59.9
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1453.7 1172 63.8
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1449.1 1255 61.0
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1429.5 1298 58.4
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1409.8 1255 58.8
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1384.0 1262 57.4
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1276.5 1046 64.2
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1190.6 884 68.7
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1161.7 1264 52.3
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1146.7 1276 49.0
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1132.9 1250 48.6
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 0.0e+00 1112.1 884 65.3
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1108.2 970 59.7
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1104.4 971 62.4
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 4.5e-302 1042.3 789 67.0
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 2.0e-289 1000.3 1290 44.7
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 3.3e-289 999.6 812 63.4
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 2.2e-288 996.9 662 76.3
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 2.2e-264 917.1 1227 43.1
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 2.4e-218 764.2 544 71.5
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 9.3e-215 752.3 1337 36.1
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 5.7e-188 663.3 621 57.6
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 7.7e-185 652.9 1415 34.3
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 1.3e-179 635.6 479 68.5
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 2.8e-179 634.4 594 56.4
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 5.7e-172 610.1 1241 33.3
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 3.5e-169 600.9 503 63.8
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 1.6e-153 548.9 651 49.5
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 1.2e-126 459.5 1170 31.5
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 5.2e-125 454.1 328 68.6
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 4.4e-124 451.1 718 42.2
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 1.9e-122 445.7 281 80.1
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 3.1e-101 375.2 232 82.3
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 3.0e-96 358.6 344 55.2
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 1.2e-92 346.7 237 75.5
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 7.4e-87 327.4 270 61.1
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 7.4e-87 327.4 270 61.1
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 2.3e-80 305.8 200 76.0
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.7e-75 289.7 237 61.6
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 1.3e-54 220.3 168 66.7
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 5.0e-51 208.4 168 64.3
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 4.7e-49 201.8 161 63.4
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 3.0e-48 199.1 154 64.9
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.5e-39 170.2 104 76.0
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 5.4e-37 161.8 119 69.7
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 8.6e-35 154.5 1205 22.7
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 6.1e-33 148.3 114 64.9
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 9.2e-29 134.4 219 41.6
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 3.8e-27 129.0 120 60.0
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 6.0e-20 105.1 91 61.5
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 6.0e-20 105.1 161 38.5
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 3.0e-19 102.8 119 43.7
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 8.6e-19 101.3 119 42.9
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 5.6e-18 98.6 135 37.0
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 2.1e-17 96.7 98 52.0
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 2.8e-17 96.3 97 51.5
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 2.0e-15 90.1 126 39.7
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 9.8e-15 87.8 62 69.4
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 9.2e-13 81.3 79 51.9
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 2.1e-12 80.1 126 34.1
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 3.5e-12 79.3 49 79.6
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 3.5e-12 79.3 122 42.6
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 6.2e-09 68.6 47 74.5
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 8.1e-09 68.2 242 26.0
Gohir.A05G315500 Gossypium hirsutum HOM05D004478 ORTHO05D016211 2.2e-06 60.1 50 58.0
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 2.9e-06 59.7 89 42.7


User provided reference genes

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