Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 4.3e-170 601.3 311 100.0
arahy.Tifrunner.gnm1.ann1.5I91Y5 Arachis hypogaea HOM05D015529 ORTHO05D015409 1.8e-128 463.0 497 57.5
arahy.Tifrunner.gnm1.ann1.VN6XRW Arachis hypogaea HOM05D015529 ORTHO05D015409 1.8e-96 356.7 457 50.3
arahy.Tifrunner.gnm1.ann1.1NC23U Arachis hypogaea HOM05D015529 ORTHO05D015409 1.3e-94 350.5 452 50.9
arahy.Tifrunner.gnm1.ann1.ZHX2UW Arachis hypogaea HOM05D015529 ORTHO05D015409 7.0e-88 328.2 497 47.1
arahy.Tifrunner.gnm1.ann1.Q7CAJS Arachis hypogaea HOM05D015529 ORTHO05D015409 1.2e-87 327.4 497 47.7
arahy.Tifrunner.gnm1.ann1.TST5GY Arachis hypogaea HOM05D015529 ORTHO05D015409 2.1e-47 193.7 364 40.1
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 1.4e-27 127.9 161 47.8
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 2.6e-26 123.6 166 44.0
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 2.2e-25 120.6 165 44.8
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 3.8e-25 119.8 201 39.3
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 6.4e-25 119.0 158 46.2
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 3.0e-22 110.2 138 44.9
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 5.1e-22 109.4 157 42.7
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 1.1e-21 108.2 159 42.8
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 2.5e-21 107.1 188 38.8
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 9.6e-21 105.1 154 42.9
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 1.6e-20 104.4 166 41.0
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 4.8e-20 102.8 169 39.6
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 3.1e-19 100.1 230 37.4
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 4.0e-19 99.8 160 41.2
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 6.9e-19 99.0 215 35.3
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 1.2e-18 98.2 177 39.0
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.0e-18 97.4 166 37.3
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 2.6e-18 97.1 147 39.5
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 7.6e-18 95.5 186 33.3
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 7.6e-18 95.5 222 33.8
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.3e-17 94.7 232 34.5
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 1.3e-17 94.7 171 38.0
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 1.3e-17 94.7 274 32.5
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 1.3e-17 94.7 273 30.8
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 2.2e-17 94.0 221 33.0
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 2.2e-17 94.0 127 41.7
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 4.9e-17 92.8 242 32.6
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 8.4e-17 92.0 166 36.7
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 3.2e-16 90.1 139 39.6
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 3.2e-16 90.1 181 34.3
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 5.5e-16 89.4 285 32.3
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 9.3e-16 88.6 270 30.7
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 1.2e-15 88.2 133 38.3
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 1.2e-15 88.2 128 39.1
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 1.6e-15 87.8 249 30.1
CAN.G650.29 Capsicum annuum HOM05D012928 ORTHO05D003355 2.1e-15 87.4 136 41.2
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 3.5e-15 86.7 80 58.8
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 3.5e-15 86.7 172 34.3
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 7.9e-15 85.5 270 31.9
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 1.0e-14 85.1 286 29.7
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 1.0e-14 85.1 136 36.8
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 1.3e-14 84.7 136 37.5
Ca_25120_v3 Cicer arietinum L. HOM05D013281 ORTHO05D015409 1.8e-14 84.3 309 29.1
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 3.9e-14 83.2 278 29.5
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 3.9e-14 83.2 127 37.8
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 5.1e-14 82.8 135 37.8
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 6.7e-14 82.4 146 37.0
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 6.7e-14 82.4 143 37.1
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 1.1e-13 81.6 252 31.0
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 1.1e-13 81.6 155 33.5
arahy.Tifrunner.gnm1.ann1.H40830 Arachis hypogaea HOM05D015529 ORTHO05D015409 1.5e-13 81.3 49 85.7
arahy.Tifrunner.gnm1.ann1.Q5MJGN Arachis hypogaea HOM05D015529 ORTHO05D015409 1.5e-13 81.3 49 85.7
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 1.5e-13 81.3 320 28.1
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.9e-13 80.9 145 33.8
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 1.9e-13 80.9 293 28.7
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 3.3e-13 80.1 138 33.3
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 3.3e-13 80.1 204 31.9
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 4.3e-13 79.7 156 35.9
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 5.6e-13 79.3 221 33.0
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 3.7e-12 76.6 233 30.0
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 4.8e-12 76.3 273 29.3
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 1.1e-11 75.1 249 30.1
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 1.1e-11 75.1 243 32.1
Oeu038657.1 Olea europaea HOM05D012928 ORTHO05D003355 1.8e-11 74.3 63 52.4
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 2.4e-11 73.9 193 31.1
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 4.0e-11 73.2 224 27.2
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 3.4e-10 70.1 291 26.1
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 7.6e-10 68.9 309 28.2
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 7.6e-10 68.9 132 31.8
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 1.0e-09 68.6 177 26.6
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.3e-09 68.2 141 30.5
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.3e-09 68.2 126 33.3
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 4.9e-09 66.2 148 28.4
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 8.4e-09 65.5 141 29.8
Dinv10342 Davidia involucrata HOM05D005863 ORTHO05D003355 8.4e-09 65.5 52 50.0
PSO478G3985 Papaver somniferum HOM05D040514 ORTHO05D003355 8.4e-09 65.5 62 50.0
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 8.4e-09 65.5 272 26.1
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 1.1e-08 65.1 184 31.5
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 1.4e-08 64.7 79 41.8
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 1.9e-08 64.3 144 34.7
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 1.9e-08 64.3 134 32.1
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 1.9e-08 64.3 285 26.7
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 1.9e-08 64.3 280 26.4
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 2.5e-08 63.9 130 28.5
ECA233G0282 Erigeron canadensis HOM05D007119 ORTHO05D009220 2.5e-08 63.9 56 48.2
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 2.5e-08 63.9 75 45.3
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 3.2e-08 63.5 134 30.6
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 3.2e-08 63.5 134 30.6
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 4.2e-08 63.2 129 31.8
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 4.2e-08 63.2 95 36.8
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 9.3e-08 62.0 215 26.5
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 9.3e-08 62.0 165 28.5
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 9.3e-08 62.0 182 26.4
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 9.3e-08 62.0 84 39.3
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 1.2e-07 61.6 185 28.6
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 1.6e-07 61.2 67 44.8
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 1.6e-07 61.2 127 30.7
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 2.1e-07 60.8 147 32.0
Lj6g0020676 Lotus japonicus HOM05D005863 ORTHO05D003355 2.1e-07 60.8 128 31.2
unitig_899.g14722 Utricularia gibba HOM05D012928 ORTHO05D003355 2.1e-07 60.8 51 49.0
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 2.7e-07 60.5 129 32.6
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 3.5e-07 60.1 138 28.3
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 3.5e-07 60.1 58 46.6
Aa31LG10G330 Aethionema arabicum HOM05D000747 ORTHO05D001683 4.6e-07 59.7 126 28.6
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.6e-07 59.7 65 46.2
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 6.0e-07 59.3 97 37.1
AUR62005538 Chenopodium quinoa HOM05D025851 ORTHO05D044019 6.0e-07 59.3 88 35.2
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 1.0e-06 58.5 70 37.1
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 1.0e-06 58.5 140 30.0
SEGI_35034 Sequoiadendron giganteum HOM05D005863 ORTHO05D003355 1.0e-06 58.5 194 26.8
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 1.8e-06 57.8 153 31.4
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.8e-06 57.8 224 25.9
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 1.8e-06 57.8 116 36.2
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 2.3e-06 57.4 119 31.9
CDE02G3774 Ceratophyllum demersum HOM05D005863 ORTHO05D003355 2.3e-06 57.4 144 26.4
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 2.3e-06 57.4 279 26.9
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 2.3e-06 57.4 63 44.4
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 2.3e-06 57.4 102 31.4
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 3.0e-06 57.0 131 28.2
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 3.0e-06 57.0 62 46.8
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 3.0e-06 57.0 81 42.0
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 3.0e-06 57.0 126 27.0
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 3.9e-06 56.6 227 23.3
Rhsim10G0199200 Rhododendron simsii HOM05D005863 ORTHO05D003355 5.1e-06 56.2 50 44.0
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 6.7e-06 55.8 74 39.2
HPP92_007696 Vanilla planifolia HOM05D005863 ORTHO05D015409 6.7e-06 55.8 102 35.3
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 8.7e-06 55.5 127 32.3


User provided reference genes

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