Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 4.5e-289 997.3 529 100.0
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 1.4e-269 932.6 529 93.4
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 3.1e-160 569.3 524 61.5
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 1.1e-152 544.3 531 60.6
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.2e-151 540.8 523 58.7
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 1.3e-150 537.3 523 58.3
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 4.9e-150 535.4 522 61.9
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 1.6e-148 530.4 529 56.3
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 3.8e-142 509.2 527 59.0
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 2.7e-140 503.1 530 56.8
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 1.0e-139 501.1 530 56.2
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 1.3e-139 500.7 538 56.3
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 4.3e-138 495.7 532 56.8
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 7.3e-138 495.0 533 56.5
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 2.8e-137 493.0 534 55.2
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 6.9e-136 488.4 528 54.9
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 5.4e-133 478.8 529 56.1
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 9.3e-133 478.0 543 54.1
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 1.2e-132 477.6 532 55.6
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 2.3e-131 473.4 528 53.8
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 2.8e-129 466.5 555 51.2
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 4.8e-129 465.7 528 53.2
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.1e-128 464.5 510 54.1
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.4e-128 463.4 528 53.0
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.0e-128 462.6 528 52.7
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 9.0e-128 461.5 528 52.8
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 1.5e-127 460.7 545 52.1
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 1.7e-126 457.2 537 52.5
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 3.8e-126 456.1 515 53.8
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 4.9e-126 455.7 537 53.3
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 5.4e-125 452.2 537 51.8
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.0e-123 448.0 538 52.2
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.5e-122 444.1 548 50.9
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 7.4e-122 441.8 545 49.5
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 4.0e-120 436.0 522 51.5
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.3e-120 435.6 517 51.8
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 5.8e-119 432.2 507 51.5
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 5.8e-119 432.2 546 51.5
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 9.9e-119 431.4 530 51.3
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.2e-118 430.3 517 51.3
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 2.9e-118 429.9 535 49.5
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 1.4e-117 427.6 542 51.5
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 4.2e-117 426.0 571 48.9
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 1.6e-116 424.1 550 48.4
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 2.7e-116 423.3 523 51.8
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 4.6e-116 422.5 513 50.7
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 3.0e-115 419.9 537 48.6
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 6.7e-115 418.7 543 49.2
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 8.7e-115 418.3 529 49.7
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 1.9e-114 417.2 540 50.9
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 1.6e-113 414.1 618 44.8
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 1.6e-113 414.1 497 50.9
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 1.8e-112 410.6 510 50.6
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 3.1e-112 409.8 533 49.0
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 9.0e-112 408.3 521 52.0
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 5.8e-111 405.6 538 49.8
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 7.6e-111 405.2 534 50.0
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 1.7e-110 404.1 542 47.4
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.7e-110 404.1 530 48.5
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 4.9e-110 402.5 546 47.6
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.1e-109 401.4 546 47.3
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 1.9e-109 400.6 530 48.7
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 5.5e-109 399.1 535 48.0
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 6.0e-108 395.6 542 47.4
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.3e-107 394.4 506 49.4
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 3.9e-107 392.9 543 47.1
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 3.3e-106 389.8 524 48.1
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 5.7e-106 389.0 533 47.5
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 5.7e-106 389.0 549 47.2
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 7.4e-106 388.7 377 56.5
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 1.3e-105 387.9 529 47.6
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 1.4e-104 384.4 536 46.1
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 2.4e-104 383.6 528 46.4
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 6.9e-104 382.1 539 46.0
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 1.2e-103 381.3 534 46.8
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 1.2e-103 381.3 512 48.2
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 2.6e-103 380.2 523 47.0
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 3.4e-103 379.8 515 47.8
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 1.0e-102 378.3 514 47.9
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 2.9e-102 376.7 535 48.0
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 3.2e-101 373.2 531 48.4
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 1.4e-99 367.9 533 44.8
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.8e-99 367.5 525 45.9
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 8.8e-99 365.2 538 44.8
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 4.3e-98 362.8 542 44.8
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 4.1e-96 356.3 449 50.1
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 2.0e-95 354.0 530 45.1
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 4.5e-95 352.8 420 53.3
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 6.5e-94 349.0 528 43.8
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 8.5e-94 348.6 540 43.9
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 8.5e-94 348.6 518 43.2
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 1.1e-93 348.2 530 42.8
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 1.9e-93 347.4 520 43.8
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 3.2e-93 346.7 539 43.2
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 7.2e-93 345.5 528 43.4
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 1.2e-92 344.7 525 42.9
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 1.2e-92 344.7 537 43.0
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 1.6e-92 344.4 537 43.0
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 2.1e-92 344.0 539 42.9
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 6.1e-92 342.4 537 46.4
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 7.9e-92 342.0 542 43.4
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 1.0e-91 341.7 533 42.8
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 1.4e-91 341.3 543 42.4
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 5.1e-91 339.3 553 43.4
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 5.1e-91 339.3 525 43.6
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 8.8e-91 338.6 532 42.5
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 2.0e-90 337.4 544 42.8
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 2.6e-90 337.0 537 42.3
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 2.6e-90 337.0 544 42.8
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 7.4e-90 335.5 544 42.6
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 9.7e-90 335.1 532 42.9
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 1.1e-88 331.6 549 44.6
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 4.1e-88 329.7 527 40.8
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 5.0e-86 322.8 524 41.8
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 5.5e-85 319.3 384 53.1
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 1.2e-84 318.2 542 41.9
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 5.3e-80 302.8 389 46.5
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 1.6e-79 301.2 525 41.7
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 4.5e-79 299.7 523 40.7
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.7e-78 297.7 521 42.0
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 2.2e-78 297.4 363 51.5
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 8.5e-78 295.4 541 39.0
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.1e-77 295.0 511 41.5
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.2e-77 293.5 526 38.8
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 5.5e-77 292.7 527 38.3
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 4.7e-76 289.7 542 40.8
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 1.7e-73 281.2 533 37.9
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 3.7e-73 280.0 411 47.2
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 5.9e-71 272.7 449 42.1
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 1.5e-69 268.1 468 41.0
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 3.2e-69 266.9 467 40.7
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 2.3e-67 260.8 562 38.6
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 5.4e-64 249.6 507 37.3
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 7.0e-64 249.2 588 33.5
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 5.0e-62 243.0 499 37.9
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 9.5e-61 238.8 331 46.5
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 6.8e-59 232.6 424 36.6
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 1.2e-58 231.9 276 51.1
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 4.9e-57 226.5 413 39.2
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 5.9e-55 219.5 316 48.1
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 1.5e-53 214.9 414 40.1
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 1.6e-52 211.5 271 50.9
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.0e-50 204.5 406 37.9
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 1.7e-49 201.4 243 51.4
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 2.2e-49 201.1 215 53.5
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 8.3e-49 199.1 456 34.2
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.6e-47 194.9 419 35.1
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 3.0e-46 190.7 407 35.4
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 2.3e-43 181.0 543 29.5
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.5e-37 161.8 541 31.6
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 2.5e-37 161.0 461 31.7
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 7.5e-34 149.4 193 47.2
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 1.7e-33 148.3 498 31.5
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 3.5e-31 140.6 473 29.6
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.5e-29 135.2 295 35.3
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 4.7e-28 130.2 217 39.6
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 6.8e-27 126.3 218 38.1
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.5e-26 125.2 215 44.2
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 3.4e-26 124.0 269 37.5
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 6.4e-25 119.8 209 42.6
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 6.4e-25 119.8 236 37.7
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 4.2e-24 117.1 270 37.4
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 1.0e-22 112.5 244 38.9
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 3.1e-19 100.9 87 63.2
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.4e-16 92.0 120 45.0
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.9e-16 91.7 106 49.1
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 3.5e-15 87.4 139 40.3
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 8.7e-14 82.8 124 42.7
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.3e-12 79.0 177 37.9
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 6.2e-12 76.6 70 60.0
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 1.3e-09 68.9 109 38.5
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.2e-09 68.2 90 47.8
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 2.9e-09 67.8 58 60.3
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 4.9e-09 67.0 111 35.1
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 1.9e-08 65.1 82 50.0
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 3.2e-08 64.3 48 60.4
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 4.6e-07 60.5 44 68.2
AagrBONN_evm.TU.Sc2ySwM_117.2262 Anthoceros agrestis HOM05D003929 ORTHO05D004499 3.0e-06 57.8 61 49.2


User provided reference genes

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