Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R21D2Y Arachis hypogaea HOM05D004100 ORTHO05D004781 2.2e-48 195.3 99 100.0
arahy.Tifrunner.gnm1.ann1.YUBK9J Arachis hypogaea HOM05D004100 ORTHO05D004781 1.1e-21 106.7 57 89.5
Phvul.001G239400 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.3e-19 99.8 55 85.5
Lalb_Chr15g0084391 Lupinus albus HOM05D004100 ORTHO05D004781 1.7e-19 99.4 57 80.7
Lalb_Chr18g0052831 Lupinus albus HOM05D004100 ORTHO05D004781 2.9e-19 98.6 57 78.9
Glyma.18G031200 Glycine max HOM05D004100 ORTHO05D004781 3.7e-19 98.2 57 80.7
Glyma.11G226100 Glycine max HOM05D004100 ORTHO05D004781 8.3e-19 97.1 57 78.9
Phvul.008G227500 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.1e-18 96.7 57 77.2
GSVIVG01016389001 Vitis vinifera HOM05D004100 ORTHO05D004781 1.1e-18 96.7 57 78.9
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 1.9e-18 95.9 69 68.1
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 2.4e-18 95.5 69 66.7
Lalb_Chr04g0250821 Lupinus albus HOM05D004100 ORTHO05D004781 3.2e-18 95.1 56 78.6
Ca_05921_v3 Cicer arietinum L. HOM05D004100 ORTHO05D004781 4.1e-18 94.7 57 77.2
Gohir.A05G346300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 4.1e-18 94.7 57 75.4
Sed0020785 Sechium edule HOM05D004100 ORTHO05D004781 5.4e-18 94.4 57 75.4
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 7.0e-18 94.0 69 65.2
Gohir.D04G065900 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.2e-17 93.2 57 73.7
Gorai.012G074300 Gossypium raimondii HOM05D004100 ORTHO05D004781 1.2e-17 93.2 57 73.7
Thecc.10G028200 Theobroma cacao HOM05D004100 ORTHO05D004781 1.2e-17 93.2 57 71.9
Duzib114G0906 Durio zibethinus HOM05D004100 ORTHO05D004781 1.6e-17 92.8 57 71.9
Duzib128G1203 Durio zibethinus HOM05D004100 ORTHO05D004781 1.6e-17 92.8 57 71.9
CiPaw.01G294400 Carya illinoinensis HOM05D004100 ORTHO05D004781 2.0e-17 92.4 57 73.7
Glyma.02G253300 Glycine max HOM05D004100 ORTHO05D004781 2.0e-17 92.4 57 75.4
RcHm_v2.0_Chr1g0369131 Rosa chinensis HOM05D004100 ORTHO05D004781 2.7e-17 92.0 57 73.7
Glyma.14G063100 Glycine max HOM05D004100 ORTHO05D004781 3.5e-17 91.7 57 73.7
Prupe.2G244600 Prunus persica HOM05D004100 ORTHO05D004781 3.5e-17 91.7 57 71.9
Ciclev10010082m.g Citrus clementina HOM05D004100 ORTHO05D004781 1.0e-16 90.1 57 70.2
Potri.010G194400 Populus trichocarpa HOM05D004100 ORTHO05D004781 1.0e-16 90.1 57 71.9
COL.COLO4_25607 Corchorus olitorius HOM05D004100 ORTHO05D004781 1.3e-16 89.7 58 72.4
Gohir.A13G017100 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.3e-16 89.7 57 70.2
Gohir.D13G018200 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.3e-16 89.7 57 70.2
Potri.008G063000 Populus trichocarpa HOM05D004100 ORTHO05D004781 1.3e-16 89.7 57 70.2
CSS0011416 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.7e-16 89.4 54 77.8
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 1.7e-16 89.4 69 59.4
Sed0001470 Sechium edule HOM05D004100 ORTHO05D004781 1.7e-16 89.4 57 71.9
CSS0037675 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.3e-16 89.0 52 78.8
Manes.07G124300 Manihot esculenta HOM05D004100 ORTHO05D004781 3.0e-16 88.6 57 68.4
CSS0039007 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 3.9e-16 88.2 53 75.5
FvH4_7g23790 Fragaria vesca HOM05D004100 ORTHO05D004781 5.0e-16 87.8 57 71.9
Gorai.013G020200 Gossypium raimondii HOM05D004100 ORTHO05D004781 8.6e-16 87.0 57 68.4
TWI63G1110 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 8.6e-16 87.0 57 70.2
Manes.10G019000 Manihot esculenta HOM05D004100 ORTHO05D004781 1.1e-15 86.7 57 64.9
arahy.Tifrunner.gnm1.ann1.0J6FIX Arachis hypogaea HOM05D004100 ORTHO05D004781 1.5e-15 86.3 57 71.9
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 1.5e-15 86.3 57 71.9
CiPaw.02G189000 Carya illinoinensis HOM05D004100 ORTHO05D004781 1.9e-15 85.9 57 70.2
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 2.5e-15 85.5 69 59.4
Sabra10G0149500 Salix brachista HOM05D004100 ORTHO05D004781 9.5e-15 83.6 57 66.7
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 1.2e-14 83.2 68 58.8
Lj6g0000528 Lotus japonicus HOM05D004100 ORTHO05D004781 1.6e-14 82.8 72 54.2
Ah.10g030410 Amaranthus hybridus HOM05D004100 ORTHO05D004781 2.1e-14 82.4 72 51.4
PSO384G2084 Papaver somniferum HOM05D004100 ORTHO05D004781 2.1e-14 82.4 57 64.9
PSO585G0025 Papaver somniferum HOM05D004100 ORTHO05D004781 2.1e-14 82.4 57 64.9
ClCG11G006500 Citrullus lanatus HOM05D004100 ORTHO05D004781 2.8e-14 82.0 52 73.1
CAN.G567.29 Capsicum annuum HOM05D004100 ORTHO05D004781 4.7e-14 81.3 72 51.4
PGR044G2436 Punica granatum HOM05D004100 ORTHO05D004781 4.7e-14 81.3 69 53.6
Solyc08g082695.1 Solanum lycopersicum HOM05D004100 ORTHO05D004781 4.7e-14 81.3 57 63.2
Sopen08g030920 Solanum pennellii HOM05D004100 ORTHO05D004781 4.7e-14 81.3 57 63.2
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 8.1e-14 80.5 158 38.0
Sed0017691 Sechium edule HOM05D004100 ORTHO05D004781 8.1e-14 80.5 57 66.7
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 8.1e-14 80.5 68 54.4
DCAR_027562 Daucus carota HOM05D004100 ORTHO05D004781 1.1e-13 80.1 57 63.2
SalBow1G1269 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.4e-13 79.7 57 61.4
Migut.F01567 Erythranthe guttata HOM05D004100 ORTHO05D004781 2.3e-13 79.0 58 60.3
MSTRG.234 Avicennia marina HOM05D004100 ORTHO05D004781 4.0e-13 78.2 57 57.9
TAR369G1064 Trochodendron aralioides HOM05D004100 ORTHO05D004781 5.2e-13 77.8 71 53.5
Cc02_g07040 Coffea canephora HOM05D004100 ORTHO05D004781 8.9e-13 77.0 57 57.9
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 1.2e-12 76.6 57 59.6
CDE05G3529 Ceratophyllum demersum HOM05D004100 ORTHO05D004781 1.5e-12 76.3 57 61.4
Hma1.2p1_0026F.1_g016860 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 1.5e-12 76.3 57 57.9
Oeu055822.1 Olea europaea HOM05D004100 ORTHO05D004781 1.5e-12 76.3 57 59.6
unitig_0.g234 Utricularia gibba HOM05D004100 ORTHO05D004781 1.5e-12 76.3 57 57.9
Migut.I01038 Erythranthe guttata HOM05D004100 ORTHO05D004781 2.0e-12 75.9 57 56.1
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 4.4e-12 74.7 69 50.7
Eucgr.G03237 Eucalyptus grandis HOM05D004100 ORTHO05D004781 5.8e-12 74.3 69 49.3
HanXRQChr07g0202251 Helianthus annuus HOM05D004100 ORTHO05D004781 5.8e-12 74.3 57 56.1
SalBow6G6247 Salvia bowleyana HOM05D004100 ORTHO05D004781 9.9e-12 73.6 52 59.6
Aqoxy2G00841 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 1.3e-11 73.2 56 55.4
Aqoxy6G01946 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 1.7e-11 72.8 69 47.8
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.7e-11 72.8 54 61.1
Os03g0331900 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 1.7e-11 72.8 70 48.6
Pp3c5_27310 Physcomitrium patens HOM05D004100 ORTHO05D004781 1.7e-11 72.8 69 53.6
Nn2g11332 Nelumbo nucifera HOM05D004100 ORTHO05D004781 2.2e-11 72.4 57 59.6
arahy.Tifrunner.gnm1.ann1.458UQU Arachis hypogaea HOM05D000198 ORTHO05D006356 2.9e-11 72.0 37 97.3
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 3.7e-11 71.6 69 47.8
Nn2g13575 Nelumbo nucifera HOM05D004100 ORTHO05D004781 3.7e-11 71.6 55 60.0
Os09g0326850 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 3.7e-11 71.6 58 55.2
Mapoly0015s0116 Marchantia polymorpha HOM05D004100 ORTHO05D004781 4.9e-11 71.2 57 54.4
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 8.3e-11 70.5 69 47.8
ECA238G3287 Erigeron canadensis HOM05D004100 ORTHO05D004781 8.3e-11 70.5 57 54.4
TAR623G1136 Trochodendron aralioides HOM05D004100 ORTHO05D004781 8.3e-11 70.5 57 57.9
arahy.Tifrunner.gnm1.ann1.VN5CTW Arachis hypogaea HOM05D024831 ORTHO05D085163 1.1e-10 70.1 49 77.6
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 1.1e-10 70.1 69 47.8
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.1e-10 70.1 68 50.0
Lsat_1_v5_gn_1_35860 Lactuca sativa HOM05D004100 ORTHO05D004781 1.4e-10 69.7 54 55.6
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 1.9e-10 69.3 68 47.1
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 1.9e-10 69.3 69 50.7
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 2.4e-10 68.9 70 47.1
Sabra16G0106200 Salix brachista HOM05D004100 ORTHO05D004781 2.4e-10 68.9 69 46.4
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 3.2e-10 68.6 69 46.4
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 3.2e-10 68.6 69 46.4
Actinidia07713 Actinidia chinensis HOM05D004100 ORTHO05D004781 4.1e-10 68.2 57 50.9
Actinidia13907 Actinidia chinensis HOM05D004100 ORTHO05D004781 4.1e-10 68.2 57 50.9
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 4.1e-10 68.2 72 47.2
Pp3c6_2550 Physcomitrium patens HOM05D004100 ORTHO05D004781 4.1e-10 68.2 57 57.9
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 5.4e-10 67.8 72 47.2
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 5.4e-10 67.8 72 48.6
CAN.G689.7 Capsicum annuum HOM05D004100 ORTHO05D004781 5.4e-10 67.8 57 50.9
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 5.4e-10 67.8 69 44.9
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 5.4e-10 67.8 69 49.3
Atru.chr8.2168 Acer truncatum HOM05D004100 ORTHO05D004781 7.1e-10 67.4 57 52.6
CSS0048931 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 7.1e-10 67.4 57 47.4
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 9.2e-10 67.0 70 45.7
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 9.2e-10 67.0 70 45.7
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 9.2e-10 67.0 70 45.7
CiPaw.10G153500 Carya illinoinensis HOM05D004100 ORTHO05D004781 9.2e-10 67.0 68 47.1
MELO3C009201.2 Cucumis melo HOM05D004100 ORTHO05D004781 9.2e-10 67.0 72 45.8
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 9.2e-10 67.0 70 47.1
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 9.2e-10 67.0 70 45.7
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 9.2e-10 67.0 69 46.4
arahy.Tifrunner.gnm1.ann1.W15MA1 Arachis hypogaea HOM05D000139 ORTHO05D000103 1.2e-09 66.6 42 81.0
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 1.2e-09 66.6 70 45.7
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 1.2e-09 66.6 70 45.7
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 1.2e-09 66.6 70 45.7
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.2e-09 66.6 69 46.4
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 1.6e-09 66.2 72 47.2
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 1.6e-09 66.2 69 49.3
MD12G1158300 Malus domestica HOM05D004100 ORTHO05D004781 1.6e-09 66.2 72 43.1
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 2.7e-09 65.5 70 45.7
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 2.7e-09 65.5 70 47.1
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 2.7e-09 65.5 70 45.7
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 2.7e-09 65.5 70 45.7
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 2.7e-09 65.5 70 45.7
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 2.7e-09 65.5 69 44.9
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 3.5e-09 65.1 70 45.7
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 3.5e-09 65.1 70 45.7
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 3.5e-09 65.1 72 45.8
Cfa017271 Carpinus fangiana HOM05D004100 ORTHO05D004781 3.5e-09 65.1 68 45.6
Rhsim09G0171200 Rhododendron simsii HOM05D004100 ORTHO05D004781 3.5e-09 65.1 57 49.1
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 3.5e-09 65.1 69 46.4
vmacro10075 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 3.5e-09 65.1 57 50.9
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 4.6e-09 64.7 68 47.1
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 4.6e-09 64.7 68 47.1
MD04G1144200 Malus domestica HOM05D004100 ORTHO05D004781 4.6e-09 64.7 72 43.1
PGR031G0718 Punica granatum HOM05D004100 ORTHO05D004781 4.6e-09 64.7 68 47.1
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 4.6e-09 64.7 69 46.4
arahy.Tifrunner.gnm1.ann1.XFEU61 Arachis hypogaea HOM05D000139 ORTHO05D000103 6.0e-09 64.3 42 78.6
C08p29320 Brassica napus HOM05D004100 ORTHO05D004781 6.0e-09 64.3 72 45.8
FvH4_6g12280 Fragaria vesca HOM05D004100 ORTHO05D004781 6.0e-09 64.3 69 47.8
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 6.0e-09 64.3 66 43.9
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 7.8e-09 63.9 70 45.7
vmacro16617 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 7.8e-09 63.9 57 49.1
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 1.0e-08 63.5 70 42.9
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 1.0e-08 63.5 70 42.9
FAN09G3480 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.0e-08 63.5 68 47.1
CiPaw.09G204500 Carya illinoinensis HOM05D004100 ORTHO05D004781 1.7e-08 62.8 68 44.1
Rhsim03G0139100 Rhododendron simsii HOM05D004100 ORTHO05D004781 5.1e-08 61.2 57 45.6
Prupe.6G268700 Prunus persica HOM05D004100 ORTHO05D004781 6.6e-08 60.8 57 52.6
QL07p036366 Quercus lobata HOM05D004100 ORTHO05D004781 8.6e-08 60.5 67 41.8
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.1e-07 60.1 63 44.4
Psat7g242160 Pisum sativum HOM05D004100 ORTHO05D004781 1.1e-07 60.1 68 42.6
Prupe.6G268600 Prunus persica HOM05D004100 ORTHO05D004781 1.9e-07 59.3 57 50.9
SMO117G0142 Selaginella moellendorffii HOM05D004100 ORTHO05D004781 1.9e-07 59.3 69 40.6
AUR62013833 Chenopodium quinoa HOM05D004100 ORTHO05D004781 5.6e-07 57.8 78 39.7
HPP92_003287 Vanilla planifolia HOM05D004100 ORTHO05D004781 5.6e-07 57.8 54 53.7
Sed0010532 Sechium edule HOM05D004100 ORTHO05D004781 9.5e-07 57.0 69 43.5
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 2.8e-06 55.5 69 40.6
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 3.6e-06 55.1 69 42.0


User provided reference genes

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