Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.4e-73 279.6 153 100.0
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 6.5e-71 270.8 153 96.7
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 5.9e-40 167.9 160 65.6
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 1.2e-35 153.7 129 72.1
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 7.5e-35 151.0 162 61.7
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.5e-30 136.0 163 57.1
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 1.6e-29 133.3 125 65.6
Medtr5g092085 Medicago truncatula HOM05D004992 ORTHO05D006004 3.4e-27 125.6 121 66.1
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 2.9e-26 122.5 129 60.5
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.6e-24 115.2 114 65.8
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 5.0e-23 111.7 130 59.2
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 6.8e-20 101.3 131 51.9
VMungo0647G1570 Vigna mungo HOM05D004992 ORTHO05D006004 2.0e-19 99.8 121 57.9
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 6.4e-18 94.7 160 41.9
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 2.4e-17 92.8 141 47.5
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 7.1e-17 91.3 132 50.0
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 7.1e-17 91.3 141 48.2
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 9.2e-17 90.9 148 41.9
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 3.9e-15 85.5 105 48.6
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.9e-14 83.2 132 41.7
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 4.3e-14 82.0 153 41.2
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 4.3e-14 82.0 123 43.1
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 4.3e-14 82.0 155 42.6
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 4.3e-14 82.0 110 44.5
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 9.5e-14 80.9 132 40.9
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.6e-13 80.1 153 40.5
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 1.1e-12 77.4 129 38.0
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.1e-12 75.9 155 39.4
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 4.0e-12 75.5 131 40.5
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 5.2e-12 75.1 118 42.4
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 2.6e-11 72.8 109 43.1
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 7.6e-11 71.2 144 36.8
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 7.6e-11 71.2 130 40.0
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 1.3e-10 70.5 110 40.0
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 2.2e-10 69.7 141 36.9
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 3.8e-10 68.9 115 41.7
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 3.8e-10 68.9 124 41.1
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 4.9e-10 68.6 143 33.6
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 6.4e-10 68.2 120 37.5
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 8.4e-10 67.8 116 40.5
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 8.4e-10 67.8 130 35.4
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.1e-09 67.4 114 41.2
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 1.4e-09 67.0 115 38.3
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 1.4e-09 67.0 111 37.8
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.9e-09 66.6 108 41.7
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.9e-09 66.6 108 41.7
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 1.9e-09 66.6 103 40.8
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.4e-09 66.2 114 41.2
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 4.1e-09 65.5 115 40.9
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 5.4e-09 65.1 124 36.3
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 5.4e-09 65.1 134 39.6
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 1.2e-08 63.9 114 39.5
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.1e-08 63.2 130 38.5
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.1e-08 63.2 130 38.5
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 3.5e-08 62.4 125 37.6
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 3.5e-08 62.4 115 38.3
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 3.5e-08 62.4 120 35.8
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 3.5e-08 62.4 130 37.7
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 7.8e-08 61.2 114 40.4
DCAR_010042 Daucus carota HOM05D004992 ORTHO05D006004 7.8e-08 61.2 155 34.2
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 7.8e-08 61.2 112 37.5
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.0e-07 60.8 124 35.5
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 1.0e-07 60.8 124 37.1
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.0e-07 60.8 130 36.9
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.3e-07 60.5 116 35.3
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 1.3e-07 60.5 113 38.1
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 1.7e-07 60.1 111 39.6
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 2.3e-07 59.7 112 41.1
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 2.3e-07 59.7 116 38.8
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 3.0e-07 59.3 116 35.3
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 3.0e-07 59.3 116 36.2
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 3.0e-07 59.3 112 37.5
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 3.0e-07 59.3 129 34.9
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 3.9e-07 58.9 109 39.4
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 3.9e-07 58.9 129 34.9
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 5.1e-07 58.5 107 36.4
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 5.1e-07 58.5 126 36.5
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 1.1e-06 57.4 107 36.4
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.1e-06 57.4 113 37.2
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 1.1e-06 57.4 124 37.9
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.5e-06 56.2 114 34.2
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.5e-06 56.2 114 34.2
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 2.5e-06 56.2 111 38.7
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 3.3e-06 55.8 126 31.7
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 3.3e-06 55.8 103 38.8
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 3.3e-06 55.8 112 36.6
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 4.3e-06 55.5 115 33.9
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 4.3e-06 55.5 114 34.2
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 4.3e-06 55.5 117 32.5
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 4.3e-06 55.5 130 33.8
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 5.6e-06 55.1 121 34.7
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 7.3e-06 54.7 131 36.6
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 9.6e-06 54.3 119 34.5
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 9.6e-06 54.3 125 36.0
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 9.6e-06 54.3 113 36.3


User provided reference genes

Program Settings