Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R1PR4F Arachis hypogaea HOM05D007018 ORTHO05D008887 6.2e-103 377.5 193 100.0
arahy.Tifrunner.gnm1.ann1.UKS4G3 Arachis hypogaea HOM05D007018 ORTHO05D008887 5.3e-102 374.4 193 99.0
Glyma.06G016200 Glycine max HOM05D007018 ORTHO05D008887 1.1e-67 260.4 187 74.9
TPR.G38107 Trifolium pratense HOM05D007018 ORTHO05D008887 2.3e-65 252.7 176 73.3
Medtr3g115880 Medicago truncatula HOM05D007018 ORTHO05D008887 5.1e-65 251.5 168 75.0
Lalb_Chr11g0061471 Lupinus albus HOM05D007018 ORTHO05D008887 3.7e-63 245.4 193 69.4
Phvul.009G006300 Phaseolus vulgaris HOM05D007018 ORTHO05D008887 1.1e-62 243.8 175 73.1
Psat5g009640 Pisum sativum HOM05D007018 ORTHO05D008887 1.4e-62 243.4 166 75.3
Lj1g0008636 Lotus japonicus HOM05D007018 ORTHO05D008887 1.8e-62 243.0 166 75.9
VMungo1309G2102 Vigna mungo HOM05D007018 ORTHO05D008887 2.4e-62 242.7 184 70.7
Nn5g31007 Nelumbo nucifera HOM05D007018 ORTHO05D008887 1.2e-61 240.4 193 68.4
RcHm_v2.0_Chr7g0215941 Rosa chinensis HOM05D007018 ORTHO05D008887 1.5e-61 240.0 178 73.0
Sabra02G0005900 Salix brachista HOM05D007018 ORTHO05D008887 1.5e-61 240.0 183 71.0
QL02p015150 Quercus lobata HOM05D007018 ORTHO05D008887 4.5e-61 238.4 186 68.3
Potri.005G253600 Populus trichocarpa HOM05D007018 ORTHO05D008887 1.3e-60 236.9 187 69.0
Gohir.D01G088700 Gossypium hirsutum HOM05D007018 ORTHO05D008887 1.7e-60 236.5 184 68.5
Atru.chr13.101 Acer truncatum HOM05D007018 ORTHO05D008887 2.2e-60 236.1 185 67.0
Actinidia17062 Actinidia chinensis HOM05D007018 ORTHO05D008887 2.2e-60 236.1 161 77.0
Sc26g0004680 Simmondsia chinensis HOM05D007018 ORTHO05D008887 3.8e-60 235.3 201 66.7
Haze_22833 Corylus avellana HOM05D007018 ORTHO05D008887 6.5e-60 234.6 181 68.5
Gohir.A01G103400 Gossypium hirsutum HOM05D007018 ORTHO05D008887 1.5e-59 233.4 177 68.4
CsaV3_4G037440 Cucumis sativus L. HOM05D007018 ORTHO05D008887 1.9e-59 233.0 179 67.6
GSVIVG01013398001 Vitis vinifera HOM05D007018 ORTHO05D008887 1.9e-59 233.0 188 67.0
CANSAT25G2394 Cannabis sativa HOM05D007018 ORTHO05D008887 4.2e-59 231.9 171 71.9
Dinv31968 Davidia involucrata HOM05D007018 ORTHO05D008887 4.2e-59 231.9 194 64.4
FAN18G2290 Fragaria x ananassa HOM05D007018 ORTHO05D008887 4.2e-59 231.9 180 69.4
CiPaw.08G075600 Carya illinoinensis HOM05D007018 ORTHO05D008887 5.5e-59 231.5 180 69.4
Gorai.002G114400 Gossypium raimondii HOM05D007018 ORTHO05D008887 5.5e-59 231.5 184 67.4
DCAR_022937 Daucus carota HOM05D007018 ORTHO05D008887 7.2e-59 231.1 173 68.2
FvH4_5g25650 Fragaria vesca HOM05D007018 ORTHO05D008887 9.4e-59 230.7 180 68.9
FAN04G0342 Fragaria x ananassa HOM05D007018 ORTHO05D008887 9.4e-59 230.7 179 69.8
CSS0014140 Camellia sinensis var. sinensis HOM05D007018 ORTHO05D008887 1.6e-58 229.9 179 68.7
Sabra05G0196700 Salix brachista HOM05D007018 ORTHO05D008887 3.6e-58 228.8 175 71.4
FAN13G0505 Fragaria x ananassa HOM05D007018 ORTHO05D008887 4.7e-58 228.4 179 68.7
Sed0005335 Sechium edule HOM05D007018 ORTHO05D008887 6.1e-58 228.0 181 65.7
TWI36G0062 Tripterygium wilfordii HOM05D007018 ORTHO05D008887 6.1e-58 228.0 177 68.4
MELO3C017041.2 Cucumis melo HOM05D007018 ORTHO05D008887 8.0e-58 227.6 178 66.9
MD06G1006600 Malus domestica HOM05D007018 ORTHO05D008887 1.4e-57 226.9 169 69.8
FAN08G2873 Fragaria x ananassa HOM05D007018 ORTHO05D008887 1.8e-57 226.5 179 68.2
Duzib093G1136 Durio zibethinus HOM05D007018 ORTHO05D008887 2.3e-57 226.1 182 64.8
Prupe.5G008700 Prunus persica HOM05D007018 ORTHO05D008887 5.2e-57 224.9 187 65.2
Ciclev10002616m.g Citrus clementina HOM05D007018 ORTHO05D008887 6.7e-57 224.6 179 69.8
Eucgr.F01791 Eucalyptus grandis HOM05D007018 ORTHO05D008887 6.7e-57 224.6 167 70.7
Hma1.2p1_0699F.1_g205550 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 6.7e-57 224.6 181 66.3
Lsat_1_v5_gn_8_27360 Lactuca sativa HOM05D007018 ORTHO05D008887 8.8e-57 224.2 188 67.0
PSO541G4149 Papaver somniferum HOM05D007018 ORTHO05D008887 8.8e-57 224.2 194 61.3
Lj4A809G49 Lonicera japonica HOM05D007018 ORTHO05D008887 1.5e-56 223.4 177 67.8
HanXRQChr08g0216381 Helianthus annuus HOM05D007018 ORTHO05D008887 2.6e-56 222.6 192 64.6
Migut.C00367 Erythranthe guttata HOM05D007018 ORTHO05D008887 3.3e-56 222.2 186 66.1
Thhalv10004993m.g Eutrema salsugineum HOM05D007018 ORTHO05D008887 4.4e-56 221.9 182 63.7
TAR633G0270 Trochodendron aralioides HOM05D007018 ORTHO05D008887 7.4e-56 221.1 190 62.6
TAR625G1418 Trochodendron aralioides HOM05D007018 ORTHO05D008887 9.7e-56 220.7 190 62.1
MSTRG.993 Avicennia marina HOM05D007018 ORTHO05D008887 1.3e-55 220.3 196 64.3
PGSC0003DMG400009913 Solanum tuberosum HOM05D007018 ORTHO05D008887 1.3e-55 220.3 171 66.1
Solyc04g082590.3 Solanum lycopersicum HOM05D007018 ORTHO05D008887 2.2e-55 219.5 171 65.5
SGA_v2.0_scaffold366G50030 Striga asiatica HOM05D007018 ORTHO05D008887 2.2e-55 219.5 170 67.6
PGR083G2064 Punica granatum HOM05D007018 ORTHO05D008887 2.8e-55 219.2 178 65.7
Sp1g32030 Schrenkiella parvula HOM05D007018 ORTHO05D008887 2.8e-55 219.2 167 66.5
CAN.G311.135 Capsicum annuum HOM05D007018 ORTHO05D008887 3.7e-55 218.8 175 66.3
Aa31sc108G20 Aethionema arabicum HOM05D007018 ORTHO05D008887 6.3e-55 218.0 169 65.1
Rhsim06G0005000 Rhododendron simsii HOM05D007018 ORTHO05D008887 1.1e-54 217.2 190 64.7
AT1G42480 Arabidopsis thaliana HOM05D007018 ORTHO05D008887 1.4e-54 216.9 183 62.8
ClCG11G018850 Citrullus lanatus HOM05D007018 ORTHO05D008887 1.4e-54 216.9 179 67.0
Sopen04g036220 Solanum pennellii HOM05D007018 ORTHO05D008887 1.4e-54 216.9 170 64.7
CARHR292440 Cardamine hirsuta HOM05D007018 ORTHO05D008887 1.8e-54 216.5 182 63.2
A08p07720 Brassica napus HOM05D007018 ORTHO05D008887 2.4e-54 216.1 171 63.7
Carub.0001s3428 Capsella rubella HOM05D007018 ORTHO05D008887 3.1e-54 215.7 164 65.2
Aqoxy6G01596 Aquilegia oxysepala HOM05D007018 ORTHO05D008887 4.1e-54 215.3 174 66.7
C08p09340 Brassica napus HOM05D007018 ORTHO05D008887 5.3e-54 214.9 171 63.2
BraA08t32785Z Brassica rapa HOM05D007018 ORTHO05D008887 5.3e-54 214.9 167 64.7
AL1G51350 Arabidopsis lyrata HOM05D007018 ORTHO05D008887 7.0e-54 214.5 167 64.7
Peaxi162Scf00680g00121 Petunia axillaris HOM05D007018 ORTHO05D008887 7.0e-54 214.5 175 64.6
BcaC07g37460 Brassica carinata HOM05D007018 ORTHO05D008887 1.2e-53 213.8 167 64.1
BolC8t47779H Brassica oleracea HOM05D007018 ORTHO05D008887 1.6e-53 213.4 167 64.1
CDE05G1284 Ceratophyllum demersum HOM05D007018 ORTHO05D008887 3.5e-53 212.2 180 62.8
ECA233G6114 Erigeron canadensis HOM05D000716 ORTHO05D002658 5.9e-53 211.5 173 64.7
BcaB04g17781 Brassica carinata HOM05D007018 ORTHO05D008887 7.7e-53 211.1 167 64.1
Cc04_g01910 Coffea canephora HOM05D007018 ORTHO05D008887 7.7e-53 211.1 163 65.0
THA.LOC104806916 Tarenaya hassleriana HOM05D007018 ORTHO05D008887 1.0e-52 210.7 165 64.8
unitig_749.g13890 Utricularia gibba HOM05D007018 ORTHO05D008887 1.3e-52 210.3 183 63.9
Manes.18G003600 Manihot esculenta HOM05D007018 ORTHO05D008887 9.4e-51 204.1 175 63.4
HPP92_012484 Vanilla planifolia HOM05D007018 ORTHO05D008887 1.8e-49 199.9 164 65.2
vmacro21785 Vaccinium macrocarpon HOM05D007018 ORTHO05D008887 3.4e-48 195.7 249 49.0
SalBow7G2934 Salvia bowleyana HOM05D007018 ORTHO05D008887 5.7e-48 194.9 139 71.9
ATR0807G118 Amborella trichopoda HOM05D007018 ORTHO05D008887 3.7e-47 192.2 134 73.9
Hma1.2p1_0699F.1_g205540 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 4.8e-47 191.8 145 69.7
Os02g0117200 Oryza sativa ssp. japonica HOM05D007018 ORTHO05D008887 2.4e-46 189.5 183 55.7
Zm00001eb209390 Zea mays HOM05D007018 ORTHO05D008887 2.4e-46 189.5 174 58.0
Actinidia15510 Actinidia chinensis HOM05D007018 ORTHO05D008887 2.2e-44 183.0 119 80.7
COL.COLO4_37754 Corchorus olitorius HOM05D007018 ORTHO05D008887 2.2e-44 183.0 154 65.6
Thecc.08G062700 Theobroma cacao HOM05D007018 ORTHO05D008887 3.6e-42 175.6 134 69.4
Ca_15400_v3 Cicer arietinum L. HOM05D007018 ORTHO05D008887 6.8e-41 171.4 130 66.9
Manes.13G069000 Manihot esculenta HOM05D007018 ORTHO05D008887 8.8e-41 171.0 135 67.4
Nitab4.5_0009646g0030 Nicotiana tabacum HOM05D007018 ORTHO05D008887 1.6e-37 160.2 190 50.0
AUR62035144 Chenopodium quinoa HOM05D007018 ORTHO05D008887 4.5e-37 158.7 190 48.4
Pp3c3_21490 Physcomitrium patens HOM05D007018 ORTHO05D008887 1.1e-35 154.1 183 47.0
EL10Ac1g01910 Beta vulgaris HOM05D007018 ORTHO05D008887 6.1e-34 148.3 168 51.8
AUR62042577 Chenopodium quinoa HOM05D007018 ORTHO05D008887 2.3e-33 146.4 174 50.0
HPP92_001689 Vanilla planifolia HOM05D007018 ORTHO05D008887 2.0e-32 143.3 163 50.3
Glyma.04G016200 Glycine max HOM05D007018 ORTHO05D008887 1.7e-31 140.2 100 76.0
Cre16.g661700 Chlamydomonas reinhardtii HOM05D007018 ORTHO05D008887 2.8e-26 122.9 174 42.0
Prupe.5G008600 Prunus persica HOM05D007018 ORTHO05D008887 3.7e-23 112.5 82 70.7
MCO14G410 Micromonas commoda HOM05D007018 ORTHO05D008887 3.2e-22 109.4 177 37.3
AUR62042580 Chenopodium quinoa HOM05D007018 ORTHO05D008887 1.6e-21 107.1 173 41.6
Hma1.2p1_0699F.1_g205580 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 7.8e-21 104.8 77 64.9
Potri.002G007601 Populus trichocarpa HOM05D007018 ORTHO05D008887 7.8e-21 104.8 74 71.6
Hund05090 Selenicereus undatus HOM05D007018 ORTHO05D008887 1.3e-20 104.0 125 46.4
AagrBONN_evm.TU.Sc2ySwM_228.4250 Anthoceros agrestis HOM05D007018 ORTHO05D008887 1.1e-19 100.9 72 65.3
PRCOL_00006317 Prasinoderma coloniale HOM05D007018 ORTHO05D008887 7.3e-19 98.2 136 43.4
SEGI_04341 Sequoiadendron giganteum HOM05D007018 ORTHO05D008887 5.4e-14 82.0 49 73.5
HPP92_012557 Vanilla planifolia HOM05D007018 ORTHO05D008887 2.6e-08 63.2 84 45.2
SHI07962 Sapria himalayana HOM05D007018 ORTHO05D008887 1.4e-06 57.4 36 72.2


User provided reference genes

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