Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 3.1e-114 415.2 225 100.0
arahy.Tifrunner.gnm1.ann1.DD58DK Arachis hypogaea HOM05D006823 ORTHO05D008608 3.4e-100 368.6 220 91.4
arahy.Tifrunner.gnm1.ann1.F8HZ0X Arachis hypogaea HOM05D006823 ORTHO05D008608 7.3e-95 350.9 220 88.6
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 4.3e-87 325.1 220 78.2
arahy.Tifrunner.gnm1.ann1.R3LTDD Arachis hypogaea HOM05D006823 ORTHO05D008608 4.7e-86 321.6 197 90.9
arahy.Tifrunner.gnm1.ann1.HB0B2V Arachis hypogaea HOM05D006823 ORTHO05D008608 6.8e-85 317.8 225 82.2
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 6.8e-85 317.8 220 78.2
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 4.4e-84 315.1 225 71.1
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 2.4e-82 309.3 222 75.2
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 1.2e-81 307.0 219 74.4
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 4.6e-81 305.1 222 74.8
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 4.6e-81 305.1 220 75.5
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 1.1e-79 300.4 221 69.2
Manes.08G045100 Manihot esculenta HOM05D006823 ORTHO05D008608 7.6e-76 287.7 222 72.1
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 1.7e-75 286.6 221 71.0
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 1.3e-72 276.9 224 68.3
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 1.5e-71 273.5 220 65.9
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 2.8e-70 269.2 223 67.3
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 2.8e-70 269.2 218 68.3
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 2.4e-69 266.2 217 67.7
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 4.0e-69 265.4 220 67.7
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 1.2e-68 263.8 221 65.2
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 1.5e-68 263.5 208 68.3
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 4.4e-68 261.9 221 64.7
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 7.6e-68 261.2 222 66.2
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 7.6e-68 261.2 224 65.2
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 2.9e-67 259.2 222 62.6
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 2.9e-67 259.2 221 62.9
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 2.9e-67 259.2 213 68.1
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 4.9e-67 258.5 223 62.3
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 8.4e-67 257.7 223 62.3
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 8.4e-67 257.7 226 65.0
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.4e-66 256.9 223 62.3
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 4.2e-66 255.4 222 63.5
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 5.4e-66 255.0 223 65.9
Ciclev10012490m.g Citrus clementina HOM05D006823 ORTHO05D008608 5.4e-66 255.0 213 68.1
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 5.4e-66 255.0 228 64.9
Sabra16G0052300 Salix brachista HOM05D006823 ORTHO05D008608 5.4e-66 255.0 218 66.5
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 2.1e-65 253.1 225 64.0
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 6.0e-65 251.5 225 63.6
Haze_19965 Corylus avellana HOM05D006823 ORTHO05D008608 1.3e-64 250.4 222 67.1
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 1.7e-64 250.0 216 65.7
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 2.3e-64 249.6 227 64.3
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 3.0e-64 249.2 221 62.0
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 6.6e-64 248.1 226 56.6
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 8.7e-64 247.7 223 63.2
RcHm_v2.0_Chr3g0480211 Rosa chinensis HOM05D006823 ORTHO05D008608 8.7e-64 247.7 223 60.5
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 1.5e-63 246.9 223 63.2
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 1.5e-63 246.9 223 60.5
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 1.5e-63 246.9 223 63.7
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.9e-63 246.5 209 64.6
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 2.5e-63 246.1 225 60.0
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 2.5e-63 246.1 229 60.3
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 3.3e-63 245.7 221 66.1
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 5.6e-63 245.0 225 61.8
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 7.3e-63 244.6 224 62.1
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 1.3e-62 243.8 225 61.3
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 3.6e-62 242.3 231 61.0
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 1.1e-61 240.7 219 61.6
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 1.8e-61 240.0 225 61.3
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 1.8e-61 240.0 225 61.3
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 1.8e-61 240.0 225 61.3
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 4.0e-61 238.8 209 63.6
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 6.9e-61 238.0 224 61.2
Dinv24090 Davidia involucrata HOM05D006823 ORTHO05D008608 9.0e-61 237.7 221 62.4
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 9.0e-61 237.7 211 63.5
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 2.0e-60 236.5 163 73.0
Rhsim04G0097800 Rhododendron simsii HOM05D006823 ORTHO05D008608 1.3e-59 233.8 213 62.4
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 4.9e-59 231.9 224 61.2
TAR623G1194 Trochodendron aralioides HOM05D006823 ORTHO05D008608 1.4e-58 230.3 200 66.0
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 7.1e-58 228.0 212 60.8
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 2.1e-57 226.5 200 65.0
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 6.0e-57 224.9 221 59.7
MSTRG.19895 Avicennia marina HOM05D006823 ORTHO05D008608 1.0e-56 224.2 205 62.0
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 1.3e-56 223.8 205 60.0
EL10Ac3g06941 Beta vulgaris HOM05D006823 ORTHO05D008608 1.5e-55 220.3 232 58.2
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 1.9e-55 219.9 225 56.0
CSS0050046 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 5.6e-55 218.4 226 56.6
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 9.6e-55 217.6 228 54.4
SGA_v2.0_scaffold69G23076 Striga asiatica HOM05D006823 ORTHO05D008608 3.1e-53 212.6 232 56.5
arahy.Tifrunner.gnm1.ann1.WS1HM8 Arachis hypogaea HOM05D006823 ORTHO05D008608 4.0e-53 212.2 127 89.0
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 5.8e-52 208.4 221 55.7
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 1.3e-51 207.2 207 58.0
CAN.G717.3 Capsicum annuum HOM05D006823 ORTHO05D008608 6.4e-51 204.9 203 58.1
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 6.4e-51 204.9 185 61.6
Gohir.A09G127050 Gossypium hirsutum HOM05D006823 ORTHO05D008608 3.2e-50 202.6 168 64.9
MELO3C009640.2 Cucumis melo HOM05D006823 ORTHO05D008608 7.1e-50 201.4 181 64.1
Nitab4.5_0000016g0280 Nicotiana tabacum HOM05D006823 ORTHO05D008608 4.6e-49 198.7 209 55.5
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 1.8e-48 196.8 181 61.9
Lj2A371G33 Lonicera japonica HOM05D006823 ORTHO05D008608 3.0e-48 196.1 208 59.6
Nitab4.5_0003572g0020 Nicotiana tabacum HOM05D006823 ORTHO05D008608 5.1e-48 195.3 224 54.0
Migut.J01822 Erythranthe guttata HOM05D006823 ORTHO05D008608 1.1e-47 194.1 212 56.6
Sc25g0005140 Simmondsia chinensis HOM05D006823 ORTHO05D008608 4.3e-47 192.2 210 55.2
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 5.6e-47 191.8 205 55.6
AUR62012062 Chenopodium quinoa HOM05D006823 ORTHO05D008608 2.9e-43 179.5 200 51.5
arahy.Tifrunner.gnm1.ann1.ZK4YW6 Arachis hypogaea HOM05D006823 ORTHO05D008608 4.2e-42 175.6 219 56.6
Cc00_g14630 Coffea canephora HOM05D006823 ORTHO05D008608 1.6e-41 173.7 213 54.5
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.1e-41 173.3 152 61.2
AUR62024323 Chenopodium quinoa HOM05D006823 ORTHO05D008608 1.0e-40 171.0 209 48.3
Aqoxy1G00161 Aquilegia oxysepala HOM05D006823 ORTHO05D008608 1.3e-38 164.1 149 55.7
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 1.6e-38 163.7 200 45.5
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 5.3e-37 158.7 150 52.7
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 1.5e-36 157.1 211 42.7
FvH4_6g22250 Fragaria vesca HOM05D006823 ORTHO05D008608 5.9e-36 155.2 134 59.0
arahy.Tifrunner.gnm1.ann1.V1GDUY Arachis hypogaea HOM05D006823 ORTHO05D008608 6.5e-35 151.8 161 59.6
CSS0018235 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 6.5e-35 151.8 160 56.2
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 1.4e-34 150.6 221 46.2
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 2.2e-30 136.7 228 41.7
Mapoly0104s0025 Marchantia polymorpha HOM05D006823 ORTHO05D008608 4.8e-30 135.6 211 38.9
CSS0004878 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.9e-27 126.3 118 64.4
CSS0021268 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.9e-27 126.3 118 64.4
AagrBONN_evm.TU.Sc2ySwM_369.80 Anthoceros agrestis HOM05D006823 ORTHO05D008608 1.1e-26 124.4 215 39.5
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 2.7e-25 119.8 225 40.0
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 3.7e-22 109.4 158 40.5
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 9.7e-15 84.7 119 38.7
arahy.Tifrunner.gnm1.ann1.YLS7HT Arachis hypogaea HOM05D006823 ORTHO05D008608 1.8e-13 80.5 45 93.3
Zm00001eb092000 Zea mays HOM05D006823 ORTHO05D008608 2.5e-10 70.1 119 38.7
Zm00001eb385990 Zea mays HOM05D006823 ORTHO05D008608 3.6e-09 66.2 130 35.4
Cpa.g.sc85.85 Carica papaya HOM05D006823 ORTHO05D008608 3.0e-08 63.2 45 60.0
Zm00001eb116260 Zea mays HOM05D006823 ORTHO05D008608 8.8e-08 61.6 131 34.4


User provided reference genes

Program Settings