Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 3.0e-47 191.8 118 100.0
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 8.1e-45 183.7 118 88.1
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 1.3e-23 113.2 118 57.6
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 3.3e-22 108.6 118 55.9
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 5.6e-22 107.8 118 55.9
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 3.6e-21 105.1 118 53.4
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 3.6e-21 105.1 118 55.9
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 8.1e-21 104.0 118 55.9
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 1.1e-20 103.6 118 55.1
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 3.1e-20 102.1 118 55.1
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 3.1e-20 102.1 118 54.2
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 6.9e-20 100.9 118 53.4
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 6.9e-20 100.9 118 53.4
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 2.6e-19 99.0 118 53.4
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 2.6e-19 99.0 118 54.2
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 5.8e-19 97.8 118 54.2
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 1.3e-18 96.7 121 54.5
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 2.2e-18 95.9 118 52.5
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 2.2e-18 95.9 118 51.7
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 2.2e-18 95.9 118 51.7
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 2.9e-18 95.5 118 51.7
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 3.8e-18 95.1 118 53.4
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 3.8e-18 95.1 118 51.7
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 4.9e-18 94.7 121 52.1
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 6.4e-18 94.4 120 50.8
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 8.4e-18 94.0 118 50.0
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 1.1e-17 93.6 118 50.0
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 1.4e-17 93.2 118 50.8
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 2.4e-17 92.4 119 49.6
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 5.4e-17 91.3 118 49.2
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 5.4e-17 91.3 118 49.2
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 5.4e-17 91.3 118 48.3
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 7.1e-17 90.9 118 47.5
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 9.3e-17 90.5 119 52.1
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 9.3e-17 90.5 111 51.4
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 9.3e-17 90.5 118 55.1
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 1.6e-16 89.7 118 47.5
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 2.1e-16 89.4 118 47.5
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 2.7e-16 89.0 118 48.3
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 2.7e-16 89.0 119 51.3
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 2.7e-16 89.0 109 52.3
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 2.7e-16 89.0 118 50.8
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 3.5e-16 88.6 109 52.3
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 3.5e-16 88.6 118 46.6
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 3.5e-16 88.6 118 46.6
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 6.0e-16 87.8 121 48.8
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 7.9e-16 87.4 118 48.3
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 7.9e-16 87.4 118 48.3
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 7.9e-16 87.4 51 82.4
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 1.0e-15 87.0 118 47.5
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 1.0e-15 87.0 118 48.3
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 1.0e-15 87.0 118 48.3
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 1.3e-15 86.7 118 45.8
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 1.3e-15 86.7 120 51.7
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 1.8e-15 86.3 118 48.3
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 1.8e-15 86.3 111 51.4
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 2.3e-15 85.9 118 46.6
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 2.3e-15 85.9 118 46.6
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 2.3e-15 85.9 118 46.6
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 2.3e-15 85.9 118 46.6
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 2.3e-15 85.9 118 46.6
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 3.0e-15 85.5 118 49.2
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 3.0e-15 85.5 48 89.6
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 3.0e-15 85.5 118 50.0
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 5.1e-15 84.7 118 47.5
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 8.7e-15 84.0 118 49.2
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 8.7e-15 84.0 120 50.0
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.9e-14 82.8 110 50.0
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 4.3e-14 81.6 118 49.2
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 4.3e-14 81.6 129 43.4
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 7.4e-14 80.9 109 50.5
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 7.4e-14 80.9 118 47.5
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 1.6e-13 79.7 44 90.9
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 2.1e-13 79.3 118 44.1
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 2.1e-13 79.3 111 46.8
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 3.7e-13 78.6 109 48.6
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 4.8e-13 78.2 111 45.9
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 8.1e-13 77.4 47 78.7
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 1.1e-12 77.0 109 47.7
arahy.Tifrunner.gnm1.ann1.QV68FE Arachis hypogaea HOM05D007429 ORTHO05D003505 1.4e-12 76.6 112 51.8
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 1.8e-12 76.3 109 45.9
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 2.4e-12 75.9 109 48.6
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 2.4e-12 75.9 104 48.1
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 3.1e-12 75.5 112 47.3
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 4.0e-12 75.1 114 43.9
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 4.0e-12 75.1 118 44.1
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 4.0e-12 75.1 109 47.7
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 9.0e-12 73.9 118 44.1
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 2.0e-11 72.8 50 78.0
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 2.0e-11 72.8 109 45.0
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 3.4e-11 72.0 46 78.3
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 5.8e-11 71.2 111 44.1
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 5.8e-11 71.2 109 45.0
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 7.6e-11 70.9 111 45.9
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 1.7e-10 69.7 113 46.0
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 1.7e-10 69.7 118 41.5
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 2.9e-10 68.9 109 42.2
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 3.8e-10 68.6 115 41.7
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 3.8e-10 68.6 109 43.1
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 4.9e-10 68.2 109 46.8
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 8.4e-10 67.4 45 75.6
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 8.4e-10 67.4 45 75.6
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 8.4e-10 67.4 45 75.6
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 8.4e-10 67.4 109 42.2
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 8.4e-10 67.4 117 43.6
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 1.1e-09 67.0 46 71.7
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 2.4e-09 65.9 105 44.8
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 2.4e-09 65.9 45 73.3
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 3.2e-09 65.5 45 73.3
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 5.5e-09 64.7 45 71.1
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 5.5e-09 64.7 45 71.1
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 5.5e-09 64.7 45 71.1
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 5.5e-09 64.7 45 71.1
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 5.5e-09 64.7 113 39.8
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 5.5e-09 64.7 75 53.3
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 7.1e-09 64.3 45 73.3
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 7.1e-09 64.3 75 53.3
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 7.1e-09 64.3 75 53.3
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 9.3e-09 63.9 46 69.6
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 1.6e-08 63.2 46 65.2
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 1.6e-08 63.2 48 64.6
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 1.6e-08 63.2 117 37.6
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 2.1e-08 62.8 47 70.2
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 2.1e-08 62.8 48 64.6
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 2.1e-08 62.8 48 68.8
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 2.1e-08 62.8 44 68.2
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 2.1e-08 62.8 44 68.2
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 2.7e-08 62.4 44 68.2
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 2.7e-08 62.4 44 68.2
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 3.5e-08 62.0 40 80.0
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 3.5e-08 62.0 47 66.0
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 4.6e-08 61.6 56 57.1
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 6.0e-08 61.2 48 66.7
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 7.9e-08 60.8 47 68.1
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 7.9e-08 60.8 47 68.1
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 7.9e-08 60.8 47 68.1
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 7.9e-08 60.8 46 67.4
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 1.0e-07 60.5 44 68.2
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 1.0e-07 60.5 44 70.5
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 3.0e-07 58.9 38 78.9
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 3.0e-07 58.9 38 78.9
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 3.0e-07 58.9 39 76.9
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 3.0e-07 58.9 44 68.2
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 3.0e-07 58.9 43 65.1
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 3.9e-07 58.5 37 81.1
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 3.9e-07 58.5 37 81.1
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 3.9e-07 58.5 43 72.1
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 3.9e-07 58.5 43 72.1
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 3.9e-07 58.5 44 65.9
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 3.9e-07 58.5 44 65.9
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 5.1e-07 58.2 45 66.7
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 6.7e-07 57.8 38 76.3
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 6.7e-07 57.8 39 76.9
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 6.7e-07 57.8 38 76.3
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 8.7e-07 57.4 43 65.1
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 8.7e-07 57.4 45 64.4
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 8.7e-07 57.4 45 64.4
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.1e-06 57.0 37 78.4
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 1.1e-06 57.0 37 78.4
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 1.1e-06 57.0 37 78.4
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 1.9e-06 56.2 48 62.5
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 1.9e-06 56.2 45 62.2
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 1.9e-06 56.2 50 60.0
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.9e-06 56.2 45 64.4
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 1.9e-06 56.2 66 45.5
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 2.5e-06 55.8 37 75.7
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 2.5e-06 55.8 44 65.9
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 2.5e-06 55.8 71 45.1
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 3.3e-06 55.5 113 38.1
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 4.3e-06 55.1 36 75.0
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 5.6e-06 54.7 45 60.0
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 7.4e-06 54.3 35 77.1
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 9.6e-06 53.9 40 72.5
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 9.6e-06 53.9 43 60.5


User provided reference genes

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