Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 7.8e-163 577.0 282 100.0
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 3.9e-162 574.7 282 99.6
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 1.2e-150 536.6 277 96.4
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 2.4e-148 528.9 271 96.7
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 7.1e-148 527.3 271 95.9
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 9.6e-145 516.9 252 100.0
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 4.8e-144 514.6 252 99.6
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 8.1e-144 513.8 271 94.5
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 9.0e-143 510.4 252 98.4
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 4.5e-142 508.1 252 98.4
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 9.9e-142 506.9 250 98.4
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 4.2e-140 501.5 252 97.2
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 4.2e-140 501.5 252 97.2
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 1.3e-136 490.0 252 95.6
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 2.1e-136 489.2 251 95.6
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 2.1e-136 489.2 251 95.6
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 2.8e-136 488.8 252 95.6
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 3.7e-136 488.4 252 95.2
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 1.1e-135 486.9 252 94.8
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.4e-135 486.5 252 94.4
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 1.4e-135 486.5 252 94.4
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 1.8e-135 486.1 252 95.2
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 2.4e-135 485.7 251 94.8
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 2.4e-135 485.7 251 94.8
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 2.4e-135 485.7 251 94.8
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 2.4e-135 485.7 251 94.8
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 2.4e-135 485.7 251 94.8
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 2.4e-135 485.7 251 94.8
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 2.4e-135 485.7 251 94.8
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 2.4e-135 485.7 251 94.8
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 6.9e-135 484.2 252 94.4
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 9.0e-135 483.8 251 95.2
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 1.2e-134 483.4 252 94.0
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 1.2e-134 483.4 252 94.0
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 3.4e-134 481.9 251 94.4
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 4.5e-134 481.5 252 94.0
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 1.3e-133 479.9 251 94.8
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 1.3e-133 479.9 252 94.4
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 2.2e-133 479.2 251 94.0
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 3.8e-133 478.4 251 93.6
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 7.9e-131 470.7 282 85.1
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.6e-128 463.0 243 94.2
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.6e-128 463.0 243 94.2
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 1.6e-128 463.0 296 80.1
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 1.4e-127 459.9 252 90.9
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 7.6e-126 454.1 240 94.2
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 2.2e-125 452.6 240 93.8
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 4.2e-124 448.4 271 85.2
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 1.6e-123 446.4 292 79.1
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 3.5e-123 445.3 251 87.3
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 5.1e-122 441.4 252 88.1
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 5.7e-121 438.0 251 87.3
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 3.8e-117 425.2 249 85.1
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 3.6e-115 418.7 213 96.7
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 8.5e-109 397.5 211 93.8
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 8.5e-109 397.5 211 93.8
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 6.1e-107 391.3 247 81.0
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.5e-105 386.7 252 79.4
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 9.7e-105 384.0 196 95.4
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 1.4e-103 380.2 195 95.4
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 7.0e-103 377.9 202 94.1
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.5e-100 370.2 209 90.4
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 6.3e-96 354.8 196 88.3
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 7.7e-94 347.8 187 93.0
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.3e-88 330.5 184 89.1
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 2.3e-82 309.7 161 94.4
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 9.1e-79 297.7 286 61.9
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 1.6e-78 297.0 156 93.6
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 3.0e-74 282.7 150 94.0
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 2.6e-73 279.6 159 89.3
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 8.3e-72 274.6 148 93.2
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.1e-71 274.2 145 92.4
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 3.2e-71 272.7 148 89.9
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 7.8e-70 268.1 218 66.5
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.3e-68 262.7 195 73.3
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.4e-66 257.3 132 93.9
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 9.2e-63 244.6 267 48.7
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 1.5e-60 237.3 120 98.3
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 1.9e-60 236.9 119 95.8
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 4.3e-60 235.7 122 94.3
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 3.6e-59 232.6 115 97.4
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.6e-57 226.5 160 75.0
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 1.9e-52 210.3 108 93.5
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 5.6e-52 208.8 103 97.1
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 2.1e-51 206.8 115 91.3
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.8e-50 203.8 116 85.3
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 7.6e-49 198.4 105 93.3
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 2.3e-45 186.8 101 87.1
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 2.5e-44 183.3 101 92.1
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 2.5e-44 183.3 100 89.0
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 2.6e-41 173.3 154 62.3
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.8e-38 161.8 184 52.7
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 1.0e-37 161.4 101 80.2
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 3.0e-37 159.8 95 83.2
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 9.6e-36 154.8 249 34.9
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 1.1e-34 151.4 82 92.7
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 2.4e-34 150.2 70 98.6
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 4.0e-34 149.4 194 44.8
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 9.0e-34 148.3 112 69.6
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 9.0e-34 148.3 82 86.6
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.9e-32 142.5 180 49.4
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 6.4e-32 142.1 83 84.3
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 7.1e-31 138.7 98 73.5
Gohir.D04G096432 Gossypium hirsutum HOM05D005794 ORTHO05D006814 2.9e-24 116.7 58 96.6
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.1e-23 114.8 79 77.2
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 1.4e-23 114.4 59 88.1
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 1.4e-23 114.4 154 46.8
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 3.2e-23 113.2 57 93.0
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 7.1e-23 112.1 78 69.2
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 1.3e-21 107.8 172 43.0
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 7.4e-20 102.1 105 55.2
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.8e-19 100.1 64 78.1
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 3.1e-18 96.7 48 93.8
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.5e-17 94.4 67 71.6
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 3.8e-16 89.7 119 46.2
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 4.2e-15 86.3 61 65.6
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.9e-14 82.0 56 76.8
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 1.0e-13 81.6 53 84.9
SHI20514 Sapria himalayana HOM05D005794 ORTHO05D006814 3.0e-13 80.1 41 85.4
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 3.0e-13 80.1 57 70.2
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.9e-13 79.7 53 83.0
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 5.1e-13 79.3 84 51.2
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 1.1e-12 78.2 58 72.4
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 4.8e-11 72.8 35 91.4
Solyc03g013460.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 2.4e-10 70.5 56 57.1
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.6e-09 65.5 31 90.3
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.3e-08 64.7 33 84.8
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 2.2e-08 63.9 31 90.3
Aa31csc549G50 Aethionema arabicum HOM05D005794 ORTHO05D006814 2.9e-08 63.5 29 96.6
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.4e-07 61.2 74 45.9
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 3.2e-07 60.1 32 84.4
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 5.5e-07 59.3 70 42.9
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 9.3e-07 58.5 31 83.9


User provided reference genes

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