Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.QZ9QK3 Arachis hypogaea HOM05D005409 ORTHO05D006456 2.0e-308 1061.6 542 100.0
arahy.Tifrunner.gnm1.ann1.XK38U2 Arachis hypogaea HOM05D005409 ORTHO05D006456 1.6e-276 955.7 544 91.4
Glyma.07G187300 Glycine max HOM05D005409 ORTHO05D006456 3.9e-126 456.1 688 47.4
Glyma.08G061800 Glycine max HOM05D005409 ORTHO05D006456 9.5e-125 451.4 691 47.2
VMungo0251G1750 Vigna mungo HOM05D005409 ORTHO05D006456 3.6e-124 449.5 694 46.1
Lj4g0002185 Lotus japonicus HOM05D005409 ORTHO05D006456 6.2e-124 448.7 691 47.2
Ca_18454_v3 Cicer arietinum L. HOM05D005409 ORTHO05D006456 8.1e-124 448.4 687 47.3
Lalb_Chr16g0383301 Lupinus albus HOM05D005409 ORTHO05D006456 1.5e-122 444.1 667 46.8
Phvul.002G218900 Phaseolus vulgaris HOM05D005409 ORTHO05D006456 7.1e-120 435.3 688 45.8
Lalb_Chr09g0327161 Lupinus albus HOM05D005409 ORTHO05D006456 1.2e-116 424.5 679 44.8
Medtr4g092050 Medicago truncatula HOM05D005409 ORTHO05D006456 1.4e-112 411.0 673 45.9
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 1.0e-110 404.8 684 44.9
TPR.G13934 Trifolium pratense HOM05D005409 ORTHO05D006456 1.0e-110 404.8 682 44.7
Cfa016400 Carpinus fangiana HOM05D005409 ORTHO05D006456 3.1e-107 393.3 679 43.4
QL05p077347 Quercus lobata HOM05D005409 ORTHO05D006456 4.4e-106 389.4 693 42.7
Prupe.4G030000 Prunus persica HOM05D005409 ORTHO05D006456 9.9e-106 388.3 680 42.9
CiPaw.10G113200 Carya illinoinensis HOM05D005409 ORTHO05D006456 7.3e-101 372.1 683 42.9
MD05G1335400 Malus domestica HOM05D005409 ORTHO05D006456 1.8e-99 367.5 679 42.3
CsaV3_1G011380 Cucumis sativus L. HOM05D005409 ORTHO05D006456 4.0e-99 366.3 678 41.4
MD10G1310800 Malus domestica HOM05D005409 ORTHO05D006456 4.0e-99 366.3 684 41.5
ClCG03G005190 Citrullus lanatus HOM05D005409 ORTHO05D006456 7.1e-96 355.5 669 41.7
Thecc.06G207400 Theobroma cacao HOM05D005409 ORTHO05D006456 1.3e-94 351.3 687 40.8
Duzib192G0995 Durio zibethinus HOM05D005409 ORTHO05D006456 1.9e-93 347.4 691 40.2
FAN25G1204 Fragaria x ananassa HOM05D005409 ORTHO05D006456 5.6e-93 345.9 713 39.7
CiPaw.10G113100 Carya illinoinensis HOM05D005409 ORTHO05D006456 4.8e-92 342.8 682 40.9
Gohir.D10G017400 Gossypium hirsutum HOM05D005409 ORTHO05D006456 6.9e-91 339.0 680 39.9
Gorai.011G019300 Gossypium raimondii HOM05D005409 ORTHO05D006456 6.9e-91 339.0 680 39.9
Dinv18952 Davidia involucrata HOM05D005409 ORTHO05D006456 9.0e-91 338.6 710 39.6
MELO3C002515.2 Cucumis melo HOM05D005409 ORTHO05D006456 7.6e-90 335.5 677 39.7
Ciclev10014614m.g Citrus clementina HOM05D005409 ORTHO05D006456 1.3e-89 334.7 681 40.1
Nn1g06923 Nelumbo nucifera HOM05D005409 ORTHO05D006456 1.7e-89 334.3 682 39.1
Gohir.A10G017200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 2.9e-89 333.6 666 39.8
Duzib235G0390 Durio zibethinus HOM05D005409 ORTHO05D006456 3.8e-89 333.2 687 39.6
GSVIVG01006401001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.1e-88 331.6 620 41.6
COL.COLO4_33645 Corchorus olitorius HOM05D005409 ORTHO05D006456 5.5e-88 329.3 681 39.6
CANSAT35G0463 Cannabis sativa HOM05D005409 ORTHO05D006456 7.1e-88 328.9 685 39.3
Manes.17G030300 Manihot esculenta HOM05D005409 ORTHO05D006456 2.3e-86 323.9 686 38.2
Gohir.A09G070200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 3.0e-86 323.6 689 39.0
TWI63G1109 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 5.1e-86 322.8 697 37.7
Gohir.D09G070300 Gossypium hirsutum HOM05D005409 ORTHO05D006456 2.8e-84 317.0 693 38.8
Sed0006411 Sechium edule HOM05D005409 ORTHO05D006456 8.1e-84 315.5 674 40.1
Gorai.006G084700 Gossypium raimondii HOM05D005409 ORTHO05D006456 3.1e-83 313.5 700 38.6
TAR624G1144 Trochodendron aralioides HOM05D005409 ORTHO05D006456 3.8e-81 306.6 689 37.7
Nitab4.5_0000503g0080 Nicotiana tabacum HOM05D005409 ORTHO05D006456 1.1e-80 305.1 704 37.2
Rhsim02G0115600 Rhododendron simsii HOM05D005409 ORTHO05D006456 2.1e-79 300.8 725 37.4
PGSC0003DMG400021722 Solanum tuberosum HOM05D005409 ORTHO05D006456 3.5e-79 300.1 701 37.2
Solyc02g079880.3 Solanum lycopersicum HOM05D005409 ORTHO05D006456 4.6e-79 299.7 700 37.4
Actinidia11830 Actinidia chinensis HOM05D005409 ORTHO05D006456 6.7e-78 295.8 702 37.2
Lj1A1221T57 Lonicera japonica HOM05D005409 ORTHO05D006456 6.7e-78 295.8 645 38.3
Lj2A276T57 Lonicera japonica HOM05D005409 ORTHO05D006456 6.7e-78 295.8 682 37.8
Nitab4.5_0006456g0010 Nicotiana tabacum HOM05D005409 ORTHO05D006456 1.1e-77 295.0 706 36.4
Sopen02g024640 Solanum pennellii HOM05D005409 ORTHO05D006456 1.9e-77 294.3 703 37.4
Hund23539 Selenicereus undatus HOM05D005409 ORTHO05D006456 1.2e-74 285.0 683 37.0
Peaxi162Scf00759g00211 Petunia axillaris HOM05D005409 ORTHO05D006456 1.5e-74 284.6 706 36.0
Aqoxy1G03830 Aquilegia oxysepala HOM05D005409 ORTHO05D006456 2.6e-74 283.9 720 35.3
TAR626G0140 Trochodendron aralioides HOM05D005409 ORTHO05D006456 1.4e-72 278.1 696 35.9
Hma1.2p1_0809F.1_g221770 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 4.6e-71 273.1 689 35.6
ECA236G3644 Erigeron canadensis HOM05D005409 ORTHO05D006456 6.1e-71 272.7 662 36.4
DCAR_008109 Daucus carota HOM05D005409 ORTHO05D006456 2.3e-70 270.8 651 37.3
Potri.011G031900 Populus trichocarpa HOM05D005409 ORTHO05D006456 6.3e-68 262.7 679 35.2
Actinidia26760 Actinidia chinensis HOM05D005409 ORTHO05D006456 5.3e-67 259.6 492 41.3
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 5.3e-67 259.6 629 36.2
MBI02_g26225_MAGBIO Magnolia biondii HOM05D005409 ORTHO05D006456 6.9e-67 259.2 648 37.5
HanXRQChr15g0482781 Helianthus annuus HOM05D005409 ORTHO05D006456 1.2e-66 258.5 664 36.4
Sc17g0006920 Simmondsia chinensis HOM05D005409 ORTHO05D006456 1.5e-66 258.1 669 37.1
Ah.14g088510 Amaranthus hybridus HOM05D005409 ORTHO05D006456 2.6e-66 257.3 688 34.2
Oeu050809.4 Olea europaea HOM05D005409 ORTHO05D006456 4.5e-66 256.5 653 37.1
Cc02_g11840 Coffea canephora HOM05D005409 ORTHO05D006456 5.9e-66 256.1 705 33.6
Oeu016146.1 Olea europaea HOM05D005409 ORTHO05D006456 5.9e-66 256.1 709 34.3
Eucgr.E03596 Eucalyptus grandis HOM05D005409 ORTHO05D006456 1.3e-65 255.0 594 35.9
PGR042G2399 Punica granatum HOM05D005409 ORTHO05D006456 1.7e-65 254.6 672 35.7
AUR62012574 Chenopodium quinoa HOM05D005409 ORTHO05D006456 6.5e-65 252.7 679 35.1
HanXRQChr15g0482771 Helianthus annuus HOM05D005409 ORTHO05D006456 1.1e-64 251.9 669 34.8
vmacro15844 Vaccinium macrocarpon HOM05D005409 ORTHO05D006456 2.5e-64 250.8 675 36.1
MSTRG.15953 Avicennia marina HOM05D005409 ORTHO05D006456 4.2e-64 250.0 705 34.6
Migut.M01258 Erythranthe guttata HOM05D005409 ORTHO05D006456 2.7e-63 247.3 676 35.9
AUR62014626 Chenopodium quinoa HOM05D005409 ORTHO05D006456 3.6e-63 246.9 679 35.2
EL10As6g23684 Beta vulgaris HOM05D005409 ORTHO05D006456 1.4e-62 245.0 691 34.9
PSO675G2591 Papaver somniferum HOM05D005409 ORTHO05D006456 5.7e-61 239.6 673 34.8
PSO541G2946 Papaver somniferum HOM05D005409 ORTHO05D006456 7.4e-61 239.2 673 34.3
CDE01G0308 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 2.2e-60 237.7 608 36.0
Lsat_1_v5_gn_7_18380 Lactuca sativa HOM05D005409 ORTHO05D006456 8.2e-60 235.7 630 34.3
Sabra11G0025100 Salix brachista HOM05D005409 ORTHO05D006456 1.8e-59 234.6 672 34.2
RcHm_v2.0_Chr5g0004681 Rosa chinensis HOM05D005409 ORTHO05D006456 4.1e-59 233.4 525 38.9
TWI38G0167 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 9.1e-59 232.3 637 34.9
THA.LOC104809524 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 3.4e-58 230.3 655 34.7
CSS0017238 Camellia sinensis var. sinensis HOM05D005409 ORTHO05D006456 3.8e-57 226.9 644 34.9
Sabra11G0019200 Salix brachista HOM05D005409 ORTHO05D006456 6.5e-57 226.1 645 34.7
Actinidia24044 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.4e-56 224.9 494 39.1
Potri.007G119200 Populus trichocarpa HOM05D005409 ORTHO05D006456 1.4e-56 224.9 672 33.8
Haze_06671 Corylus avellana HOM05D005409 ORTHO05D006456 7.2e-56 222.6 437 40.0
FvH4_3g03030 Fragaria vesca HOM05D005409 ORTHO05D006456 1.6e-55 221.5 535 36.6
Sp1g10100 Schrenkiella parvula HOM05D005409 ORTHO05D006456 4.4e-53 213.4 655 34.2
Sabra17G0028000 Salix brachista HOM05D005409 ORTHO05D006456 5.7e-53 213.0 681 33.6
Atru.chr10.2048 Acer truncatum HOM05D005409 ORTHO05D006456 2.2e-52 211.1 411 42.6
AT1G11480 Arabidopsis thaliana HOM05D005409 ORTHO05D006456 4.8e-52 209.9 644 33.9
Aa31LG1G3270 Aethionema arabicum HOM05D005409 ORTHO05D006456 8.2e-52 209.1 655 34.0
GSVIVG01030650001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.1e-51 208.8 659 33.7
BcaC05g25024 Brassica carinata HOM05D005409 ORTHO05D006456 2.4e-51 207.6 634 32.3
Hma1.2p1_0809F.1_g221760 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 2.4e-51 207.6 570 34.0
Sabra07G0096100 Salix brachista HOM05D005409 ORTHO05D006456 1.2e-50 205.3 737 30.8
A06p08100 Brassica napus HOM05D005409 ORTHO05D006456 2.6e-50 204.1 629 32.0
C05p09680 Brassica napus HOM05D005409 ORTHO05D006456 7.7e-50 202.6 634 32.2
Cpa.g.sc81.2 Carica papaya HOM05D005409 ORTHO05D006456 5.0e-49 199.9 442 39.6
SGA_v2.0_scaffold7G03896 Striga asiatica HOM05D005409 ORTHO05D006456 5.0e-49 199.9 665 34.1
AL1G22590 Arabidopsis lyrata HOM05D005409 ORTHO05D006456 4.2e-48 196.8 650 33.2
Potri.017G041300 Populus trichocarpa HOM05D005409 ORTHO05D006456 5.5e-48 196.4 653 33.4
BraA06t24009Z Brassica rapa HOM05D005409 ORTHO05D006456 7.2e-48 196.1 616 32.5
HPP92_000870 Vanilla planifolia HOM05D005409 ORTHO05D006456 7.2e-48 196.1 667 33.6
THA.LOC104818924 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 1.4e-46 191.8 625 33.0
Thhalv10007161m.g Eutrema salsugineum HOM05D005409 ORTHO05D006456 5.2e-46 189.9 657 32.1
CARHR011750 Cardamine hirsuta HOM05D005409 ORTHO05D006456 2.0e-45 188.0 653 32.3
BolC5t29709H Brassica oleracea HOM05D005409 ORTHO05D006456 9.7e-45 185.7 618 31.4
CDE12G0800 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 2.4e-43 181.0 505 33.7
Carub.0001s1109 Capsella rubella HOM05D005409 ORTHO05D006456 3.1e-43 180.6 643 31.1
Actinidia26959 Actinidia chinensis HOM05D005409 ORTHO05D006456 3.8e-41 173.7 491 33.6
SalBow8G4343 Salvia bowleyana HOM05D005409 ORTHO05D006456 2.0e-37 161.4 447 34.7
Cpa.g.sc81.1 Carica papaya HOM05D005409 ORTHO05D006456 8.3e-36 156.0 193 52.3
RcHm_v2.0_Chr5g0004671 Rosa chinensis HOM05D005409 ORTHO05D006456 2.0e-34 151.4 152 57.2
Oeu050499.1 Olea europaea HOM05D005409 ORTHO05D006456 4.5e-34 150.2 410 35.6
Os07g0546100 Oryza sativa ssp. japonica HOM05D005409 ORTHO05D006456 1.7e-33 148.3 607 30.8
GSVIVG01006635001 Vitis vinifera HOM05D005409 ORTHO05D006456 6.5e-33 146.4 118 65.3
BcaNung07116 Brassica carinata HOM05D005409 ORTHO05D006456 2.4e-27 127.9 400 33.5
Zm00001eb323520 Zea mays HOM05D005409 ORTHO05D006456 1.2e-26 125.6 596 29.9
ATR0804G077 Amborella trichopoda HOM05D005409 ORTHO05D006456 1.5e-24 118.6 762 28.2
Atru.chr6.3116 Acer truncatum HOM05D005409 ORTHO05D006456 1.2e-23 115.5 431 29.9
Atru.chr10.2047 Acer truncatum HOM05D005409 ORTHO05D006456 5.2e-22 110.2 180 45.6
Ah.09g237100 Amaranthus hybridus HOM05D000067 ORTHO05D006456 3.4e-21 107.5 570 28.1
Haze_06667 Corylus avellana HOM05D005409 ORTHO05D006456 3.5e-18 97.4 188 39.9
Atru.chr6.3115 Acer truncatum HOM05D005409 ORTHO05D006456 4.3e-16 90.5 192 38.5
Zm00001eb106500 Zea mays HOM05D005409 ORTHO05D006456 7.3e-16 89.7 328 30.8
Mapoly0113s0049 Marchantia polymorpha HOM05D005409 ORTHO05D006456 2.1e-15 88.2 107 51.4
AagrBONN_evm.TU.Sc2ySwM_228.455 Anthoceros agrestis HOM05D005409 ORTHO05D006456 3.6e-15 87.4 113 49.6
Pp3c20_3440 Physcomitrium patens HOM05D005409 ORTHO05D006456 4.7e-15 87.0 108 49.1
Actinidia26960 Actinidia chinensis HOM05D005409 ORTHO05D006456 3.1e-14 84.3 84 59.5
CBR_g36658 Chara braunii HOM05D005409 ORTHO05D006456 9.2e-11 72.8 112 43.8
SMO118G0050 Selaginella moellendorffii HOM05D005409 ORTHO05D006456 4.6e-10 70.5 724 26.0
SEGI_29006 Sequoiadendron giganteum HOM05D005409 ORTHO05D006456 1.0e-09 69.3 251 29.9


User provided reference genes

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