Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.QXT71M Arachis hypogaea HOM05D005968 ORTHO05D007158 1.5e-52 209.1 100 100.0
arahy.Tifrunner.gnm1.ann1.D6JQQQ Arachis hypogaea HOM05D005968 ORTHO05D007158 3.2e-18 95.1 46 95.7
Potri.018G106700 Populus trichocarpa HOM05D005968 ORTHO05D007158 1.2e-17 93.2 49 83.7
Duzib187G1838 Durio zibethinus HOM05D005968 ORTHO05D007158 2.1e-17 92.4 46 91.3
Gohir.D08G273400 Gossypium hirsutum HOM05D005968 ORTHO05D007158 4.6e-17 91.3 46 89.1
Gorai.004G291800 Gossypium raimondii HOM05D005968 ORTHO05D007158 4.6e-17 91.3 46 89.1
PGR102G1528 Punica granatum HOM05D005968 ORTHO05D007158 4.6e-17 91.3 46 89.1
Ca_21128_v3 Cicer arietinum L. HOM05D005968 ORTHO05D007158 6.0e-17 90.9 46 89.1
Glyma.02G204100 Glycine max HOM05D005968 ORTHO05D007158 1.0e-16 90.1 46 87.0
Potri.006G184300 Populus trichocarpa HOM05D005968 ORTHO05D007158 1.0e-16 90.1 46 87.0
TPR.G24874 Trifolium pratense HOM05D005968 ORTHO05D007158 1.0e-16 90.1 46 87.0
arahy.Tifrunner.gnm1.ann1.VCSM30 Arachis hypogaea HOM05D005968 ORTHO05D007158 1.8e-16 89.4 46 87.0
Lalb_Chr12g0198701 Lupinus albus HOM05D005968 ORTHO05D007158 1.8e-16 89.4 46 87.0
PSO561G0082 Papaver somniferum HOM05D005968 ORTHO05D007158 1.8e-16 89.4 49 79.6
Sabra18G0090900 Salix brachista HOM05D005968 ORTHO05D007158 1.8e-16 89.4 46 89.1
Thecc.09G030600 Theobroma cacao HOM05D005968 ORTHO05D007158 1.8e-16 89.4 46 87.0
GSVIVG01023605001 Vitis vinifera HOM05D005968 ORTHO05D007158 1.8e-16 89.4 46 87.0
Nn8g39893 Nelumbo nucifera HOM05D005968 ORTHO05D007158 2.3e-16 89.0 46 87.0
Psat0s2403g0360 Pisum sativum HOM05D005968 ORTHO05D007158 2.3e-16 89.0 46 84.8
Sabra06G0140100 Salix brachista HOM05D005968 ORTHO05D007158 2.3e-16 89.0 46 87.0
Glyma.17G073700 Glycine max HOM05D005968 ORTHO05D007158 3.0e-16 88.6 46 87.0
Gohir.A08G251800 Gossypium hirsutum HOM05D005968 ORTHO05D007158 3.0e-16 88.6 46 87.0
Lj4g0027447 Lotus japonicus HOM05D005968 ORTHO05D007158 3.0e-16 88.6 46 87.0
PSO111G0029 Papaver somniferum HOM05D005968 ORTHO05D007158 3.0e-16 88.6 46 84.8
Sp7g28770 Schrenkiella parvula HOM05D005968 ORTHO05D007158 3.0e-16 88.6 46 87.0
Aa31LG2G19470 Aethionema arabicum HOM05D005968 ORTHO05D007158 3.9e-16 88.2 46 84.8
CSS0021374 Camellia sinensis var. sinensis HOM05D005968 ORTHO05D007158 3.9e-16 88.2 46 89.1
BolC1t00793H Brassica oleracea HOM05D005968 ORTHO05D007158 5.1e-16 87.8 46 82.6
MD15G1144700 Malus domestica HOM05D005968 ORTHO05D007158 5.1e-16 87.8 46 87.0
Nn2g12378 Nelumbo nucifera HOM05D005968 ORTHO05D007158 5.1e-16 87.8 46 87.0
Prupe.7G263000 Prunus persica HOM05D005968 ORTHO05D007158 5.1e-16 87.8 46 87.0
C01p08040 Brassica napus HOM05D005968 ORTHO05D007158 6.7e-16 87.4 46 80.4
Manes.14G143600 Manihot esculenta HOM05D005968 ORTHO05D007158 8.7e-16 87.0 46 87.0
Atru.chr7.47_Atru.chr7.48 Acer truncatum HOM05D005968 ORTHO05D007158 1.1e-15 86.7 46 82.6
BcaC09g51877 Brassica carinata HOM05D005968 ORTHO05D007158 1.1e-15 86.7 46 80.4
A01p07280 Brassica napus HOM05D005968 ORTHO05D007158 1.1e-15 86.7 46 80.4
BraA01t00677Z Brassica rapa HOM05D005968 ORTHO05D007158 1.1e-15 86.7 46 80.4
Thhalv10025727m.g Eutrema salsugineum HOM05D005968 ORTHO05D007158 1.1e-15 86.7 46 80.4
MD02G1007400 Malus domestica HOM05D005968 ORTHO05D007158 1.1e-15 86.7 46 82.6
Medtr4g130840 Medicago truncatula HOM05D005968 ORTHO05D007158 1.1e-15 86.7 46 82.6
CiPaw.15G168400 Carya illinoinensis HOM05D005968 ORTHO05D007158 1.5e-15 86.3 46 82.6
THA.LOC104803560 Tarenaya hassleriana HOM05D005968 ORTHO05D007158 1.5e-15 86.3 46 82.6
BcaNung03430 Brassica carinata HOM05D005968 ORTHO05D007158 2.5e-15 85.5 46 80.4
VMungo1215G2113 Vigna mungo HOM05D005968 ORTHO05D007158 2.5e-15 85.5 46 80.4
Cc06_g14960 Coffea canephora HOM05D005968 ORTHO05D007158 3.3e-15 85.1 46 82.6
Carub.0007s0964 Capsella rubella HOM05D005968 ORTHO05D007158 4.3e-15 84.7 46 78.3
CARHR238800 Cardamine hirsuta HOM05D005968 ORTHO05D007158 4.3e-15 84.7 46 78.3
DCAR_017911 Daucus carota HOM05D005968 ORTHO05D007158 4.3e-15 84.7 46 84.8
SalBow1G6433 Salvia bowleyana HOM05D005968 ORTHO05D007158 5.6e-15 84.3 46 80.4
Ciclev10008980m.g Citrus clementina HOM05D005968 ORTHO05D007158 7.4e-15 84.0 46 80.4
Dinv41378 Davidia involucrata HOM05D005968 ORTHO05D007158 7.4e-15 84.0 46 84.8
Dinv42854 Davidia involucrata HOM05D005968 ORTHO05D007158 7.4e-15 84.0 46 84.8
Dinv43246 Davidia involucrata HOM05D005968 ORTHO05D007158 7.4e-15 84.0 46 84.8
Peaxi162Scf00401g00718 Petunia axillaris HOM05D005968 ORTHO05D007158 9.6e-15 83.6 46 82.6
QL02p093270 Quercus lobata HOM05D005968 ORTHO05D007158 9.6e-15 83.6 46 82.6
Sopen07g001730 Solanum pennellii HOM05D005968 ORTHO05D007158 9.6e-15 83.6 46 82.6
PGSC0003DMG400011184 Solanum tuberosum HOM05D005968 ORTHO05D007158 9.6e-15 83.6 46 82.6
SGA_v2.0_scaffold347G49545 Striga asiatica HOM05D005968 ORTHO05D007158 9.6e-15 83.6 51 70.6
arahy.Tifrunner.gnm1.ann1.HGKJ8P Arachis hypogaea HOM05D005968 ORTHO05D007158 1.3e-14 83.2 41 90.2
unitig_52.g17565 Utricularia gibba HOM05D005968 ORTHO05D007158 1.3e-14 83.2 46 78.3
Nitab4.5_0003623g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 1.6e-14 82.8 46 80.4
HanXRQChr09g0245781 Helianthus annuus HOM05D005968 ORTHO05D007158 2.1e-14 82.4 46 80.4
Hma1.2p1_0222F.1_g093590 Hydrangea macrophylla HOM05D005968 ORTHO05D007158 2.1e-14 82.4 46 82.6
Solyc07g005620.2 Solanum lycopersicum HOM05D005968 ORTHO05D007158 2.1e-14 82.4 46 80.4
AL7G21190 Arabidopsis lyrata HOM05D005968 ORTHO05D007158 2.8e-14 82.0 46 76.1
ATR0739G020 Amborella trichopoda HOM05D005968 ORTHO05D007158 3.7e-14 81.6 46 80.4
MELO3C010224.2 Cucumis melo HOM05D005968 ORTHO05D007158 3.7e-14 81.6 46 80.4
CsaV3_1G028970 Cucumis sativus L. HOM05D005968 ORTHO05D007158 3.7e-14 81.6 46 80.4
TWI34G0179 Tripterygium wilfordii HOM05D005968 ORTHO05D007158 4.8e-14 81.3 46 80.4
EL10Ac8g18668 Beta vulgaris HOM05D005968 ORTHO05D007158 6.2e-14 80.9 46 80.4
ClCG06G012410 Citrullus lanatus HOM05D005968 ORTHO05D007158 6.2e-14 80.9 46 78.3
COL.COLO4_18810 Corchorus olitorius HOM05D000238 ORTHO05D007158 6.2e-14 80.9 40 87.5
Migut.K00326 Erythranthe guttata HOM05D005968 ORTHO05D007158 8.1e-14 80.5 46 78.3
RcHm_v2.0_Chr2g0085621 Rosa chinensis HOM05D005968 ORTHO05D007158 8.1e-14 80.5 46 78.3
CiPaw.16G111000 Carya illinoinensis HOM05D005968 ORTHO05D007158 1.1e-13 80.1 41 82.9
Eucgr.C02493 Eucalyptus grandis HOM05D005968 ORTHO05D007158 1.1e-13 80.1 46 78.3
Eucgr.C02541 Eucalyptus grandis HOM05D005968 ORTHO05D007158 1.1e-13 80.1 46 78.3
FvH4_1g00920 Fragaria vesca HOM05D005968 ORTHO05D007158 1.1e-13 80.1 43 81.4
FAN23G3092 Fragaria x ananassa HOM05D005968 ORTHO05D007158 1.1e-13 80.1 43 81.4
FAN26G1763 Fragaria x ananassa HOM05D005968 ORTHO05D007158 1.1e-13 80.1 43 81.4
Oeu038141.1 Olea europaea HOM05D005968 ORTHO05D007158 1.1e-13 80.1 46 76.1
TAR626G1902 Trochodendron aralioides HOM05D005968 ORTHO05D007158 1.1e-13 80.1 40 85.0
Lsat_1_v5_gn_8_63401 Lactuca sativa HOM05D005968 ORTHO05D007158 1.4e-13 79.7 46 78.3
AT4G30900 Arabidopsis thaliana HOM05D005968 ORTHO05D007158 1.8e-13 79.3 46 73.9
ECA236G4418 Erigeron canadensis HOM05D005968 ORTHO05D007158 1.8e-13 79.3 46 76.1
Sed0018428 Sechium edule HOM05D005968 ORTHO05D007158 2.4e-13 79.0 46 80.4
CDE04G1812 Ceratophyllum demersum HOM05D005968 ORTHO05D007158 3.1e-13 78.6 46 73.9
CiPaw.15G168700 Carya illinoinensis HOM05D005968 ORTHO05D007158 4.0e-13 78.2 40 82.5
CANSAT11G2689 Cannabis sativa HOM05D005968 ORTHO05D007158 5.3e-13 77.8 46 71.7
DCAR_019393 Daucus carota HOM05D005968 ORTHO05D007158 6.9e-13 77.4 46 76.1
Zm00001eb086780 Zea mays HOM05D005968 ORTHO05D007158 4.5e-12 74.7 47 70.2
Zm00001eb420110 Zea mays HOM05D005968 ORTHO05D007158 4.5e-12 74.7 47 70.2
Cpa.g.sc46.156 Carica papaya HOM05D005968 ORTHO05D007158 5.8e-12 74.3 38 86.8
Lj7A459G65 Lonicera japonica HOM05D005968 ORTHO05D007158 5.8e-12 74.3 43 79.1
Os05g0279600 Oryza sativa ssp. japonica HOM05D005968 ORTHO05D007158 1.0e-11 73.6 47 68.1
HPP92_004698 Vanilla planifolia HOM05D005968 ORTHO05D007158 1.3e-11 73.2 47 72.3
Aqoxy2G01962_Aqoxy2G01963 Aquilegia oxysepala HOM05D005968 ORTHO05D007158 4.2e-10 68.2 50 66.0
Mapoly0088s0077 Marchantia polymorpha HOM05D005968 ORTHO05D007158 1.2e-09 66.6 51 52.9
Cfa020826 Carpinus fangiana HOM05D002374 ORTHO05D003594 1.0e-08 63.5 29 93.1
SEGI_19747 Sequoiadendron giganteum HOM05D005968 ORTHO05D007158 2.5e-07 58.9 49 57.1
Oeu038782.2 Olea europaea HOM05D005968 ORTHO05D007158 3.3e-07 58.5 52 53.8


User provided reference genes

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