Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 0.0e+00 1328.9 664 100.0
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 0.0e+00 1089.7 618 89.6
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 1.2e-150 537.7 569 53.6
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 2.3e-149 533.5 566 53.0
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 1.8e-141 507.3 559 53.0
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 1.8e-141 507.3 575 52.9
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 8.3e-139 498.4 580 51.9
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 7.0e-138 495.4 574 52.4
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 3.1e-133 479.9 569 50.6
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 7.5e-132 475.3 566 50.5
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 8.6e-128 461.8 574 48.6
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 5.4e-106 389.4 568 42.1
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 9.6e-103 378.6 563 41.7
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 1.3e-102 378.3 578 40.3
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 1.0e-96 358.6 571 39.9
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 3.9e-96 356.7 572 39.3
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.7e-94 350.1 572 39.3
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 2.6e-92 344.0 556 40.1
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 4.2e-90 336.7 555 38.7
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 3.5e-89 333.6 563 38.5
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 5.7e-87 326.2 590 37.3
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 2.1e-86 324.3 451 42.1
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 3.1e-85 320.5 577 36.2
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 3.4e-84 317.0 559 36.5
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.0e-83 315.5 563 37.1
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 6.5e-83 312.8 551 37.9
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 2.7e-81 307.4 574 35.9
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.6e-81 307.0 591 37.2
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 7.9e-81 305.8 617 35.8
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.0e-80 303.9 575 35.7
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 7.4e-79 299.3 574 34.3
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 9.1e-77 292.4 570 36.1
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.0e-76 291.2 454 39.6
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 3.4e-76 290.4 563 36.4
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.2e-75 287.7 554 36.1
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 1.8e-72 278.1 573 34.4
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 2.3e-72 277.7 435 39.5
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 8.8e-72 275.8 563 35.9
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 7.4e-71 272.7 561 35.1
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 7.4e-71 272.7 564 36.7
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 9.7e-71 272.3 561 35.8
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 1.7e-67 261.5 559 32.7
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 7.2e-66 256.1 541 34.8
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 9.4e-66 255.8 580 32.4
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 6.7e-64 249.6 564 32.8
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 2.0e-63 248.1 581 31.7
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.7e-62 245.0 485 33.8
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 4.1e-61 240.4 559 31.1
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 5.3e-61 240.0 578 29.1
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.6e-60 237.7 572 28.8
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.6e-60 237.7 572 28.8
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 2.2e-59 234.6 567 32.1
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 6.5e-59 233.0 555 32.3
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 1.5e-58 231.9 509 32.2
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 3.2e-58 230.7 568 31.0
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 1.2e-57 228.8 533 31.3
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.1e-57 228.0 484 35.5
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 3.6e-57 227.3 459 34.4
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 3.6e-57 227.3 584 31.8
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 3.6e-57 227.3 565 31.9
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 4.7e-57 226.9 540 31.9
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 8.0e-57 226.1 580 31.2
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.0e-56 225.7 541 31.6
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.0e-56 225.7 560 30.5
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 1.8e-56 224.9 585 29.4
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.3e-56 224.6 560 30.7
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.3e-56 224.6 560 30.7
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 5.2e-56 223.4 583 31.4
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 6.7e-56 223.0 569 31.3
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 6.7e-56 223.0 564 31.4
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 7.5e-55 219.5 580 30.2
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 2.8e-54 217.6 561 30.8
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 1.4e-53 215.3 576 31.4
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 3.1e-53 214.2 564 30.3
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 4.1e-53 213.8 460 32.2
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 4.1e-53 213.8 574 31.5
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 2.7e-52 211.1 458 32.1
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 3.5e-52 210.7 578 31.1
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 4.5e-52 210.3 602 29.4
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 1.0e-51 209.1 551 30.5
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 2.9e-51 207.6 536 30.6
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.9e-51 207.6 537 29.8
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 3.8e-51 207.2 581 29.6
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 8.5e-51 206.1 593 30.9
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 4.2e-50 203.8 446 31.8
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.6e-49 200.7 537 29.4
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 4.7e-49 200.3 550 30.4
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 6.1e-49 199.9 523 30.2
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 6.1e-49 199.9 531 29.6
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 8.0e-49 199.5 593 30.4
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 8.0e-49 199.5 550 30.2
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.0e-48 199.1 549 29.3
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 1.4e-48 198.7 522 29.7
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 4.0e-48 197.2 562 30.1
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.5e-47 195.3 546 26.7
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 2.6e-47 194.5 497 31.0
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 5.7e-47 193.4 469 31.1
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 5.7e-47 193.4 467 28.7
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 1.3e-46 192.2 467 29.6
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 4.8e-46 190.3 597 28.6
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 6.3e-46 189.9 486 28.4
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.8e-45 188.3 567 25.9
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 5.4e-45 186.8 587 26.7
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 5.4e-45 186.8 465 28.8
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 2.7e-44 184.5 568 27.5
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 3.5e-44 184.1 479 29.0
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 4.5e-44 183.7 430 29.8
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 1.3e-43 182.2 483 26.9
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 1.7e-43 181.8 555 26.1
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 2.9e-43 181.0 457 32.2
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 9.5e-42 176.0 482 29.7
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 9.5e-42 176.0 453 30.5
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 1.2e-41 175.6 553 26.2
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 1.6e-41 175.3 561 27.3
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 2.1e-41 174.9 235 44.3
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 3.6e-41 174.1 469 26.7
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.7e-41 173.7 565 28.5
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 1.0e-40 172.6 554 26.7
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 5.2e-40 170.2 489 26.2
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 4.4e-39 167.2 261 41.0
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.4e-39 167.2 478 28.9
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 9.8e-39 166.0 467 27.6
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 9.8e-39 166.0 552 26.8
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.7e-38 165.2 574 25.8
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.2e-38 164.9 552 27.0
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.8e-38 164.5 575 27.3
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.9e-38 163.7 526 27.4
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 4.9e-38 163.7 459 29.2
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 8.3e-38 162.9 458 27.3
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 1.8e-37 161.8 438 29.2
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 7.8e-36 156.4 448 26.8
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 5.0e-35 153.7 446 28.9
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 1.9e-34 151.8 567 24.9
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 4.3e-34 150.6 413 28.3
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 1.6e-33 148.7 453 27.4
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 5.2e-32 143.7 455 27.0
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 6.8e-32 143.3 449 26.7
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 1.2e-31 142.5 412 27.9
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 4.4e-31 140.6 451 27.7
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 2.2e-30 138.3 275 35.6
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 4.9e-30 137.1 250 38.8
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 4.9e-30 137.1 488 27.0
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 7.0e-29 133.3 270 32.2
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.0e-28 131.7 264 36.0
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.3e-27 129.0 422 25.6
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 1.5e-26 125.6 441 24.3
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 1.4e-24 119.0 271 31.7
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 7.5e-23 113.2 278 29.1
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 7.5e-23 113.2 278 29.1
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.3e-22 112.5 230 31.3
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 1.3e-22 112.5 278 29.1
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 3.2e-21 107.8 226 31.9
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 2.0e-20 105.1 250 28.0
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 3.5e-20 104.4 240 27.5
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 7.8e-20 103.2 229 32.3
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 7.8e-20 103.2 219 26.9
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 2.3e-19 101.7 148 39.2
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 6.2e-17 93.6 167 37.7
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 8.1e-17 93.2 266 27.4
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.4e-16 92.4 293 29.0
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 8.3e-14 83.2 306 26.8
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 8.3e-14 83.2 291 26.8
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 2.1e-12 78.6 233 27.0
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 3.0e-11 74.7 263 21.7
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 8.6e-11 73.2 219 29.7
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 1.5e-10 72.4 473 23.9
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 7.3e-10 70.1 138 34.8
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 3.6e-09 67.8 192 28.6
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 3.1e-08 64.7 65 44.6
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 5.2e-08 63.9 70 37.1
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 4.4e-07 60.8 223 29.6
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 2.9e-06 58.2 221 29.0
BcaB06g29645 Brassica carinata HOM05D003538 ORTHO05D018603 6.4e-06 57.0 85 36.5


User provided reference genes

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