Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 8.9e-93 343.6 173 100.0
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 8.9e-93 343.6 173 100.0
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 3.3e-79 298.5 173 86.1
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.4e-69 266.5 170 76.5
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 1.8e-69 266.2 172 75.6
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 3.1e-69 265.4 170 77.1
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 6.9e-69 264.2 165 77.0
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 1.2e-68 263.5 166 76.5
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.5e-68 263.1 166 74.7
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 2.0e-68 262.7 169 76.9
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 2.6e-68 262.3 164 78.7
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 5.8e-68 261.2 170 73.5
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 3.8e-67 258.5 170 75.3
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 3.8e-67 258.5 167 76.0
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 3.8e-67 258.5 169 74.6
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 3.8e-67 258.5 168 76.2
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.1e-66 256.9 168 75.0
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.4e-66 256.5 168 75.0
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.9e-66 256.1 169 72.8
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 2.4e-66 255.8 168 75.0
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 4.2e-66 255.0 169 74.6
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 4.2e-66 255.0 168 75.0
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 5.4e-66 254.6 165 75.2
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 7.1e-66 254.2 165 75.2
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 7.1e-66 254.2 162 75.9
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 9.3e-66 253.8 166 75.3
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 1.2e-65 253.4 161 73.9
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.6e-65 253.1 161 74.5
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.6e-65 253.1 167 72.5
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 2.1e-65 252.7 162 77.2
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 2.7e-65 252.3 165 73.9
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.5e-65 251.9 168 73.8
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.5e-65 251.9 168 73.8
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 3.5e-65 251.9 165 73.9
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 3.5e-65 251.9 168 72.6
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 4.6e-65 251.5 166 74.7
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 4.6e-65 251.5 161 74.5
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 4.6e-65 251.5 167 72.5
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.0e-64 250.4 170 72.9
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.0e-64 250.4 162 73.5
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 1.8e-64 249.6 158 74.7
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 2.3e-64 249.2 158 75.3
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 2.3e-64 249.2 166 73.5
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 3.0e-64 248.8 165 74.5
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 3.0e-64 248.8 161 73.9
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 3.0e-64 248.8 164 73.2
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 3.9e-64 248.4 165 73.3
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 3.9e-64 248.4 164 71.3
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 5.1e-64 248.1 161 72.7
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.1e-64 248.1 161 72.7
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 5.1e-64 248.1 168 70.8
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 5.1e-64 248.1 168 70.8
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 6.7e-64 247.7 161 72.7
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 6.7e-64 247.7 164 70.7
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 6.7e-64 247.7 168 73.2
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 8.7e-64 247.3 161 73.9
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 8.7e-64 247.3 166 70.5
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 8.7e-64 247.3 165 70.3
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 8.7e-64 247.3 165 72.7
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.1e-63 246.9 161 73.9
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.5e-63 246.5 161 73.3
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 1.9e-63 246.1 171 73.1
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.9e-63 246.1 171 73.1
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.5e-63 245.7 165 70.3
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 2.5e-63 245.7 168 71.4
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 3.3e-63 245.4 169 71.6
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 3.3e-63 245.4 152 77.6
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 4.3e-63 245.0 168 70.8
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 4.3e-63 245.0 159 73.6
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 5.6e-63 244.6 168 69.6
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 7.4e-63 244.2 161 72.7
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 9.6e-63 243.8 168 70.2
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 9.6e-63 243.8 160 75.0
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 9.6e-63 243.8 172 69.8
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 9.6e-63 243.8 172 69.8
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 2.1e-62 242.7 164 68.9
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 2.8e-62 242.3 168 69.6
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.8e-62 242.3 168 69.0
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 2.8e-62 242.3 162 72.8
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 2.8e-62 242.3 172 69.8
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 3.7e-62 241.9 159 72.3
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 3.7e-62 241.9 168 69.6
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 4.8e-62 241.5 168 70.8
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.8e-62 241.5 171 71.9
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 6.2e-62 241.1 162 71.0
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 6.2e-62 241.1 168 69.6
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 6.2e-62 241.1 166 72.3
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 8.1e-62 240.7 159 71.7
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 8.1e-62 240.7 159 71.7
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.1e-62 240.7 171 71.3
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 8.1e-62 240.7 172 68.0
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 8.1e-62 240.7 161 73.3
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 1.1e-61 240.4 172 71.5
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.1e-61 240.4 172 69.2
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 1.1e-61 240.4 166 71.1
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 1.8e-61 239.6 159 71.1
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 1.8e-61 239.6 159 71.1
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 3.1e-61 238.8 168 69.0
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 3.1e-61 238.8 168 67.9
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 4.0e-61 238.4 168 68.5
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 4.0e-61 238.4 164 69.5
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 4.0e-61 238.4 168 69.0
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 5.3e-61 238.0 166 69.9
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 6.9e-61 237.7 164 68.9
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 6.9e-61 237.7 164 69.5
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 6.9e-61 237.7 168 69.0
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 6.9e-61 237.7 164 69.5
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 6.9e-61 237.7 164 69.5
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 6.9e-61 237.7 165 69.7
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 9.0e-61 237.3 166 69.3
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 1.2e-60 236.9 168 68.5
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 1.5e-60 236.5 165 70.9
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 2.0e-60 236.1 168 67.9
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 3.4e-60 235.3 173 68.2
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 5.8e-60 234.6 170 67.6
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.3e-59 233.4 165 66.7
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 3.8e-59 231.9 165 66.1
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.9e-59 231.5 185 66.5
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 6.5e-59 231.1 167 68.3
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 1.1e-58 230.3 172 68.6
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 1.9e-58 229.6 167 68.3
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 4.2e-58 228.4 163 65.6
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 7.9e-57 224.2 169 65.7
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 7.9e-57 224.2 172 64.5
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 1.0e-56 223.8 163 65.6
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.3e-56 223.4 164 67.1
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.8e-56 223.0 170 64.1
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.8e-56 223.0 161 66.5
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 2.3e-56 222.6 158 65.2
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 5.1e-56 221.5 169 65.7
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 6.7e-56 221.1 166 68.1
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 4.8e-54 214.9 168 64.3
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 6.2e-54 214.5 163 63.8
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.4e-53 212.6 171 63.2
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 2.0e-52 209.5 167 64.1
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 3.4e-52 208.8 155 61.9
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 4.5e-52 208.4 168 62.5
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 7.6e-52 207.6 156 62.8
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 7.6e-52 207.6 163 62.0
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.7e-51 206.5 164 58.5
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 8.4e-51 204.1 169 62.1
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 3.2e-50 202.2 126 75.4
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 7.1e-50 201.1 136 69.9
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.6e-49 199.9 153 60.8
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 6.1e-49 198.0 166 58.4
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 3.0e-48 195.7 167 55.1
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 2.2e-46 189.5 164 58.5
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 6.3e-46 188.0 132 67.4
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 8.2e-46 187.6 162 57.4
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.4e-45 186.0 126 73.8
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 4.1e-45 185.3 136 71.3
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.0e-44 183.0 125 73.6
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 4.5e-44 181.8 158 53.2
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 3.8e-43 178.7 129 66.7
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 5.0e-43 178.3 125 70.4
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 4.6e-41 171.8 133 63.9
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 5.7e-39 164.9 161 54.0
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.4e-37 160.2 165 53.3
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 2.0e-36 156.4 160 55.6
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.2e-35 152.9 168 50.6
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.2e-35 152.9 168 50.0
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.9e-34 149.8 168 48.2
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.2e-34 149.1 99 72.7
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 7.9e-33 144.4 88 77.3
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.4e-32 143.7 116 65.5
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 9.7e-31 137.5 90 71.1
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 1.0e-27 127.5 94 64.9
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.3e-27 127.1 150 42.7
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 3.0e-24 115.9 73 69.9
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.7e-22 110.2 90 55.6
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 8.2e-22 107.8 166 42.2
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.8e-19 99.0 84 57.1
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.0e-11 74.3 120 40.0
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 1.1e-10 70.9 180 30.6
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 5.5e-10 68.6 49 65.3
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 9.4e-10 67.8 50 68.0
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 6.1e-09 65.1 69 47.8
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 1.2e-07 60.8 182 26.9
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 7.5e-07 58.2 77 41.6
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 1.3e-06 57.4 32 78.1
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 3.7e-06 55.8 57 45.6
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.9e-06 55.5 34 70.6
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 6.3e-06 55.1 64 35.9


User provided reference genes

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