Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 5.1e-307 1057.0 554 100.0
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 1.7e-302 1042.0 554 99.1
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 1.4e-261 906.0 549 86.5
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 1.4e-261 906.0 552 85.5
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 5.5e-261 904.0 554 85.6
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 7.9e-260 900.2 553 85.2
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 1.0e-259 899.8 552 85.3
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 3.0e-259 898.3 552 84.2
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 1.7e-257 892.5 553 84.1
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 5.5e-253 877.5 547 83.7
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 1.5e-247 859.4 547 82.3
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 7.2e-245 850.5 552 80.6
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 4.7e-244 847.8 551 79.7
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 5.7e-242 840.9 552 81.2
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 7.4e-242 840.5 553 80.1
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 1.7e-241 839.3 551 79.1
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 2.8e-241 838.6 551 79.9
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.4e-240 836.3 549 80.7
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 3.1e-240 835.1 527 83.3
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 3.1e-240 835.1 513 84.0
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 7.0e-240 833.9 552 78.8
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 7.7e-239 830.5 558 79.7
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 7.7e-239 830.5 513 83.4
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 7.7e-239 830.5 513 83.4
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 1.0e-238 830.1 533 82.2
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 1.7e-238 829.3 513 83.2
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 6.5e-238 827.4 554 78.3
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 2.5e-237 825.5 554 78.3
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 3.2e-237 825.1 555 78.2
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 3.6e-236 821.6 550 77.8
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 8.8e-235 817.0 549 78.1
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 2.6e-234 815.5 552 77.7
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 5.7e-234 814.3 547 77.7
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 7.5e-234 813.9 515 82.1
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 9.7e-234 813.5 552 76.3
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 6.3e-233 810.8 551 76.8
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.4e-232 809.7 545 78.3
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 1.8e-232 809.3 552 77.2
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 3.1e-232 808.5 551 76.8
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 4.1e-232 808.1 517 80.3
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 4.5e-231 804.7 550 77.5
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 7.7e-231 803.9 544 78.1
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 3.6e-228 795.0 540 75.7
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 1.4e-227 793.1 548 75.4
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 1.4e-227 793.1 547 77.0
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 3.0e-227 792.0 563 73.7
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 1.2e-226 790.0 515 79.0
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.2e-226 790.0 546 76.0
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 7.5e-226 787.3 546 75.5
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 3.7e-225 785.0 560 74.5
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 8.3e-225 783.9 546 74.9
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 1.4e-224 783.1 554 74.2
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 3.1e-224 781.9 551 74.6
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 4.1e-224 781.6 548 76.5
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 4.1e-224 781.6 554 74.0
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 4.5e-223 778.1 551 73.9
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 5.9e-223 777.7 544 73.7
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 1.0e-222 776.9 546 75.6
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 1.0e-222 776.9 548 74.5
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.3e-222 776.5 547 75.7
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 1.7e-222 776.2 546 74.9
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.7e-222 776.2 547 75.3
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 1.7e-222 776.2 554 73.5
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 2.9e-222 775.4 514 77.4
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 3.8e-222 775.0 547 75.3
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 5.0e-222 774.6 633 68.7
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 1.9e-221 772.7 546 74.2
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 3.3e-221 771.9 514 78.4
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 9.5e-221 770.4 547 74.6
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 4.7e-220 768.1 551 73.5
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 1.8e-219 766.1 571 71.5
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 4.0e-219 765.0 546 73.3
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 5.2e-219 764.6 546 73.8
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 3.4e-218 761.9 515 76.3
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 4.5e-215 751.5 563 70.9
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 7.8e-215 750.7 516 75.8
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 6.6e-214 747.7 552 72.6
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 4.3e-213 745.0 556 72.7
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 1.4e-211 740.0 514 74.9
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 3.0e-211 738.8 499 77.6
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 3.0e-211 738.8 518 73.7
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 6.8e-211 737.6 649 63.6
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 4.1e-208 728.4 518 73.2
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 1.2e-199 700.3 546 68.9
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 1.2e-196 690.3 594 64.5
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 6.8e-195 684.5 532 69.4
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 1.7e-193 679.9 518 70.3
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 1.9e-192 676.4 644 60.9
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 2.7e-191 672.5 516 68.4
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 2.7e-191 672.5 502 69.7
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 1.1e-189 667.2 530 65.8
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.7e-185 653.3 428 79.7
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 9.2e-184 647.5 448 75.7
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 1.2e-178 630.6 484 70.5
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 4.4e-178 628.6 519 64.0
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 4.4e-178 628.6 519 64.0
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 3.6e-172 609.0 463 68.9
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 6.2e-164 581.6 415 74.5
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 7.6e-162 574.7 370 80.8
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 6.7e-158 561.6 532 55.8
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 1.1e-157 560.8 501 60.3
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 3.3e-157 559.3 402 74.9
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 2.0e-154 550.1 372 75.0
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 6.5e-145 518.5 333 79.9
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 1.1e-133 481.1 326 77.3
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 3.1e-115 419.9 262 81.3
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 5.3e-115 419.1 463 56.4
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 7.0e-115 418.7 262 80.9
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 5.0e-105 386.0 517 42.9
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 1.3e-100 371.3 541 42.1
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 4.1e-99 366.3 255 75.3
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 1.9e-88 330.9 498 40.0
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 2.3e-78 297.4 337 52.5
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 1.0e-73 282.0 174 80.5
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 1.5e-53 214.9 523 33.7
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 7.9e-50 202.6 173 64.7
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.3e-49 201.8 535 33.3
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 1.9e-48 198.0 515 34.4
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 3.7e-47 193.7 114 84.2
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 4.2e-43 180.3 115 80.9
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 1.1e-38 165.6 309 41.1
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 1.7e-36 158.3 552 30.6
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 1.1e-35 155.6 490 31.0
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 1.5e-32 145.2 506 30.2
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 6.5e-28 129.8 314 36.0
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 1.1e-27 129.0 86 68.6
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 1.4e-27 128.6 314 36.3
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 2.7e-26 124.4 345 33.0
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 3.3e-24 117.5 306 32.7
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 1.7e-23 115.2 255 36.1
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 4.8e-23 113.6 224 36.6
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 4.8e-23 113.6 278 32.0
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 4.1e-22 110.5 163 41.7
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 5.9e-21 106.7 381 29.7
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 1.3e-20 105.5 163 40.5
PSO541G6299 Papaver somniferum HOM05D004787 ORTHO05D302708 8.5e-20 102.8 355 29.6
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 1.1e-19 102.4 74 66.2
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 1.2e-18 99.0 59 74.6
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 2.1e-18 98.2 164 39.0
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 2.1e-18 98.2 379 28.8
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 1.0e-17 95.9 224 35.3
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 1.1e-16 92.4 254 31.1
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 2.6e-16 91.3 410 28.8
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 7.4e-16 89.7 421 28.7
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 2.4e-14 84.7 344 28.5
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 8.5e-12 76.3 300 29.7
arahy.Tifrunner.gnm1.ann1.0EHY87 Arachis hypogaea HOM05D004017 ORTHO05D004612 1.6e-10 72.0 66 60.6
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 6.1e-10 70.1 162 36.4
RcHm_v2.0_Chr5g0002281 Rosa chinensis HOM05D003404 ORTHO05D029456 2.4e-06 58.2 32 81.2


User provided reference genes

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