Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 1.5e-173 612.8 323 100.0
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 6.4e-169 597.4 323 98.1
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 8.3e-92 341.3 338 60.1
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 1.1e-91 340.9 300 65.0
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 2.0e-90 336.7 306 64.4
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 6.5e-89 331.6 305 63.0
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 8.9e-86 321.2 306 61.8
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 2.7e-82 309.7 308 60.4
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 1.5e-80 303.9 342 55.6
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 3.3e-80 302.8 305 60.3
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 1.8e-78 297.0 306 57.2
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 3.0e-78 296.2 303 57.1
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 7.5e-77 291.6 305 58.0
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 1.8e-75 287.0 319 55.8
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 7.0e-75 285.0 304 56.2
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 2.8e-63 246.5 317 49.8
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 3.1e-62 243.0 317 48.3
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 1.3e-60 237.7 312 46.8
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 1.7e-60 237.3 331 45.3
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 2.9e-60 236.5 326 46.9
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 8.3e-60 235.0 304 44.4
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 8.3e-60 235.0 311 51.1
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 8.3e-60 235.0 312 49.4
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.7e-58 229.9 319 46.7
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 7.8e-58 228.4 308 48.7
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 1.3e-57 227.6 316 44.0
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 8.6e-57 224.9 311 44.7
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 3.3e-56 223.0 312 46.5
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 4.3e-56 222.6 311 46.3
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 4.3e-56 222.6 312 46.2
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 4.3e-56 222.6 310 44.5
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 9.5e-56 221.5 316 46.8
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 8.1e-55 218.4 317 45.7
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 6.8e-54 215.3 315 44.8
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 8.9e-54 214.9 312 45.2
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 8.9e-54 214.9 309 44.3
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 4.4e-53 212.6 315 44.8
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 7.6e-53 211.8 308 46.8
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 1.3e-52 211.1 315 46.0
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 1.7e-52 210.7 307 45.0
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 1.1e-51 208.0 308 43.2
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 1.9e-51 207.2 286 46.9
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 2.7e-50 203.4 324 42.3
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 3.5e-50 203.0 319 42.3
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.5e-50 203.0 319 42.3
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 7.8e-50 201.8 317 42.0
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 8.7e-49 198.4 301 42.2
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.1e-48 198.0 302 44.0
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 1.5e-48 197.6 315 43.8
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.6e-48 195.7 314 43.9
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 7.3e-48 195.3 353 37.1
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 9.6e-48 194.9 304 40.8
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 2.1e-47 193.7 317 42.6
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 2.8e-47 193.4 299 40.1
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 3.6e-47 193.0 314 43.6
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 4.7e-47 192.6 310 42.6
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.7e-47 192.6 330 41.2
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 1.1e-46 191.4 306 44.8
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 1.8e-46 190.7 305 42.0
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 3.1e-46 189.9 308 44.2
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 5.2e-46 189.1 324 40.7
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 5.2e-46 189.1 306 39.5
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 1.5e-45 187.6 314 43.3
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 2.0e-45 187.2 281 45.2
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 4.4e-45 186.0 305 42.0
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 5.8e-45 185.7 304 41.4
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 1.4e-43 181.0 303 40.9
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 1.4e-43 181.0 324 40.4
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 3.2e-43 179.9 299 37.5
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 3.2e-43 179.9 301 39.5
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 4.2e-43 179.5 302 41.4
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 4.2e-43 179.5 313 38.3
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 5.4e-43 179.1 315 41.3
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 5.4e-43 179.1 300 39.7
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 9.3e-43 178.3 319 39.2
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 1.6e-42 177.6 310 40.3
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 3.5e-42 176.4 300 38.3
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 7.8e-42 175.3 321 41.4
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 1.7e-41 174.1 262 48.1
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 3.9e-41 172.9 311 37.6
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 8.7e-41 171.8 308 40.6
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 1.1e-40 171.4 305 40.3
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 2.5e-40 170.2 330 37.6
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 3.3e-40 169.9 285 38.9
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 2.1e-39 167.2 332 37.7
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 3.6e-39 166.4 321 38.0
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 6.2e-39 165.6 308 39.6
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 6.2e-39 165.6 346 37.6
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 1.8e-38 164.1 375 34.7
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 4.0e-38 162.9 312 40.7
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 2.0e-37 160.6 304 37.8
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 2.6e-37 160.2 312 38.8
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 5.8e-37 159.1 321 36.1
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 5.8e-37 159.1 302 36.8
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 5.8e-37 159.1 302 36.8
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 5.8e-37 159.1 307 36.2
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 7.6e-37 158.7 305 37.4
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 9.9e-37 158.3 284 41.2
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 1.9e-35 154.1 300 35.3
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 2.4e-35 153.7 323 35.9
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 4.2e-35 152.9 364 33.0
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 4.6e-34 149.4 338 36.4
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 8.7e-33 145.2 309 34.3
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 1.5e-32 144.4 311 37.6
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 1.6e-31 141.0 323 32.8
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 2.1e-31 140.6 326 34.0
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 4.8e-31 139.4 300 35.7
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 1.3e-28 131.3 312 34.0
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 4.9e-28 129.4 302 36.1
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 7.1e-27 125.6 299 33.8
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 1.2e-26 124.8 304 33.2
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.5e-26 123.2 226 40.7
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.6e-26 122.9 226 39.8
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 1.0e-25 121.7 217 40.6
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.0e-25 121.7 406 29.6
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 3.3e-24 116.7 295 30.5
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 1.0e-20 105.1 100 56.0
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 1.7e-20 104.4 94 53.2
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 1.1e-19 101.7 93 53.8
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 1.4e-19 101.3 90 60.0
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 2.5e-19 100.5 356 28.4
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 7.1e-19 99.0 250 34.4
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 4.6e-18 96.3 215 36.7
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 2.3e-17 94.0 319 27.9
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 3.3e-16 90.1 86 48.8
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 4.3e-16 89.7 102 46.1
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 5.7e-16 89.4 264 27.3
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 5.7e-16 89.4 70 67.1
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 2.2e-15 87.4 184 35.3
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 6.3e-15 85.9 146 39.7
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 9.0e-14 82.0 80 55.0
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 1.5e-13 81.3 101 43.6
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 2.0e-13 80.9 358 24.9
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 1.3e-12 78.2 219 32.4
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.7e-12 77.8 55 70.9
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 5.5e-11 72.8 250 28.0
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 6.1e-10 69.3 114 41.2
Mapoly0019s0119 Marchantia polymorpha HOM05D001447 ORTHO05D005923 1.8e-09 67.8 331 26.9
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.8e-09 67.8 187 34.8
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 4.8e-07 59.7 45 55.6


User provided reference genes

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