Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 4.9e-70 268.1 178 100.0
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 1.9e-69 266.2 178 96.6
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 7.8e-68 260.8 178 95.5
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 1.8e-64 249.6 178 92.7
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 5.4e-61 238.0 178 89.3
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 1.2e-60 236.9 175 88.0
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 6.0e-60 234.6 178 87.6
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 7.8e-60 234.2 178 85.4
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 1.7e-59 233.0 174 82.8
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 3.9e-59 231.9 178 84.3
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 7.3e-58 227.6 177 84.7
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 9.6e-58 227.3 177 83.6
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 1.3e-57 226.9 177 84.7
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 4.8e-57 224.9 177 84.7
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 6.2e-57 224.6 178 83.7
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 8.1e-57 224.2 177 65.0
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 3.1e-56 222.2 177 84.7
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 9.0e-56 220.7 174 82.2
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 3.4e-55 218.8 175 84.0
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 3.4e-55 218.8 175 84.0
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 4.5e-55 218.4 177 62.1
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 5.8e-55 218.0 177 80.8
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 5.8e-55 218.0 177 82.5
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 9.9e-55 217.2 179 80.4
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 9.9e-55 217.2 177 81.9
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 9.9e-55 217.2 177 81.4
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 2.9e-54 215.7 177 83.1
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 3.8e-54 215.3 177 78.0
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 3.8e-54 215.3 175 83.4
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 4.9e-54 214.9 174 84.5
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 4.9e-54 214.9 177 83.6
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 6.4e-54 214.5 180 80.6
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 6.4e-54 214.5 174 83.3
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 8.4e-54 214.2 176 83.0
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 1.1e-53 213.8 177 79.1
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 1.9e-53 213.0 177 80.8
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 3.2e-53 212.2 174 82.2
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 4.2e-53 211.8 176 81.2
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 4.2e-53 211.8 176 81.2
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 7.1e-53 211.1 174 80.5
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 9.3e-53 210.7 177 82.5
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 9.3e-53 210.7 176 81.8
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 1.2e-52 210.3 180 80.0
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.7e-52 209.1 174 82.2
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 4.6e-52 208.4 176 79.0
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 6.0e-52 208.0 176 80.7
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 6.0e-52 208.0 176 80.1
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 7.9e-52 207.6 176 80.7
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 1.0e-51 207.2 176 80.7
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 1.3e-51 206.8 177 80.8
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 3.0e-51 205.7 174 79.9
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 3.9e-51 205.3 179 79.3
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 3.9e-51 205.3 179 79.9
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 5.1e-51 204.9 176 80.1
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 5.1e-51 204.9 176 80.1
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 5.1e-51 204.9 177 74.0
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 6.7e-51 204.5 173 81.5
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 1.1e-50 203.8 176 80.1
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 1.5e-50 203.4 177 79.7
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 1.9e-50 203.0 175 80.6
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.9e-50 203.0 176 79.5
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.5e-50 202.6 200 53.5
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 2.5e-50 202.6 176 80.1
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 3.3e-50 202.2 174 79.9
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 4.3e-50 201.8 174 61.5
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 5.6e-50 201.4 179 79.3
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 1.3e-49 200.3 176 79.5
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 2.8e-49 199.1 175 78.9
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 2.8e-49 199.1 176 80.1
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 3.7e-49 198.7 176 59.1
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 6.2e-49 198.0 176 77.8
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 1.4e-48 196.8 250 46.4
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 3.1e-48 195.7 175 78.9
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 4.0e-48 195.3 176 58.0
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 4.0e-48 195.3 176 58.0
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 4.0e-48 195.3 175 76.0
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 2.6e-47 192.6 174 78.2
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 4.5e-47 191.8 174 77.0
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 1.7e-46 189.9 174 77.0
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 2.9e-46 189.1 174 75.3
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 1.1e-45 187.2 175 77.1
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 5.5e-45 184.9 174 74.7
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 7.1e-45 184.5 155 83.2
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 3.5e-44 182.2 176 73.3
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 6.0e-44 181.4 179 53.1
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 1.8e-43 179.9 204 62.7
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 3.0e-43 179.1 179 52.5
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 3.0e-43 179.1 193 48.7
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 5.6e-42 174.9 173 72.3
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 1.6e-41 173.3 163 52.1
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 4.0e-40 168.7 174 47.7
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 5.3e-40 168.3 179 49.2
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 2.6e-39 166.0 176 72.2
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 3.4e-39 165.6 173 53.8
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 3.4e-39 165.6 178 52.2
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 4.5e-39 165.2 195 66.7
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 1.0e-38 164.1 145 82.1
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.2e-38 162.9 173 50.9
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 2.9e-38 162.5 172 48.3
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 1.4e-37 160.2 138 82.6
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 1.9e-37 159.8 90 83.3
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 1.2e-36 157.1 138 74.6
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.6e-36 156.8 217 47.9
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 3.5e-36 155.6 140 82.1
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.5e-34 150.2 140 82.1
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 4.8e-33 145.2 179 63.1
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 4.8e-33 145.2 84 77.4
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 6.3e-33 144.8 91 76.9
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.4e-32 143.7 126 79.4
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.5e-31 140.2 166 67.5
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 5.9e-31 138.3 166 66.9
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 7.6e-31 137.9 88 71.6
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 1.1e-29 134.0 89 70.8
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 4.6e-28 128.6 89 64.0
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 2.3e-27 126.3 119 56.3
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 2.4e-24 116.3 147 46.9
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 2.6e-23 112.8 118 50.0
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.2e-20 104.0 165 39.4
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 4.4e-18 95.5 117 41.0
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 6.5e-14 81.6 101 44.6
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 8.8e-11 71.2 48 70.8
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 2.8e-09 66.2 36 83.3
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.6e-07 59.7 45 68.9
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 7.7e-07 58.2 36 75.0
Nitab4.5_0011078g0030 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.9e-06 56.2 45 62.2


User provided reference genes

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