Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.QINW4M Arachis hypogaea HOM05D004808 ORTHO05D005279 1.6e-103 379.4 191 100.0
arahy.Tifrunner.gnm1.ann1.P9AU08 Arachis hypogaea HOM05D004808 ORTHO05D005279 6.3e-31 138.3 82 85.4
arahy.Tifrunner.gnm1.ann1.ZK4BTX Arachis hypogaea HOM05D004808 ORTHO05D005279 6.3e-31 138.3 82 85.4
Lalb_Chr04g0249181 Lupinus albus HOM05D004808 ORTHO05D005279 5.0e-28 128.6 128 56.2
Lalb_Chr10g0106321 Lupinus albus HOM05D004808 ORTHO05D005279 4.7e-26 122.1 100 65.0
Phvul.008G200400 Phaseolus vulgaris HOM05D004808 ORTHO05D005279 4.7e-26 122.1 83 75.9
Ca_06218_v3 Cicer arietinum L. HOM05D004808 ORTHO05D005279 1.0e-25 120.9 96 66.7
Lalb_Chr17g0347981 Lupinus albus HOM05D004808 ORTHO05D005279 2.3e-25 119.8 100 64.0
Glyma.02G280300 Glycine max HOM05D004808 ORTHO05D005279 6.7e-25 118.2 83 74.7
Glyma.14G034300 Glycine max HOM05D004808 ORTHO05D005279 6.7e-25 118.2 83 74.7
Psat2g019840 Pisum sativum HOM05D004808 ORTHO05D005279 8.8e-25 117.9 98 64.3
GSVIVG01037260001 Vitis vinifera HOM05D004808 ORTHO05D005279 8.8e-25 117.9 96 65.6
VMungo0647G2208 Vigna mungo HOM05D004808 ORTHO05D005279 1.1e-24 117.5 83 73.5
Medtr5g089870 Medicago truncatula HOM05D004808 ORTHO05D005279 3.3e-24 115.9 96 65.6
TPR.G19341 Trifolium pratense HOM05D004808 ORTHO05D005279 4.4e-24 115.5 98 64.3
Manes.01G179900 Manihot esculenta HOM05D004808 ORTHO05D005279 9.7e-24 114.4 87 67.8
LjContig00049g0025092 Lotus japonicus HOM05D004808 ORTHO05D005279 6.3e-23 111.7 82 70.7
QL01p017473 Quercus lobata HOM05D004808 ORTHO05D005279 6.3e-23 111.7 83 69.9
CANSAT54G0995 Cannabis sativa HOM05D004808 ORTHO05D005279 1.8e-22 110.2 122 52.5
CiPaw.14G113900 Carya illinoinensis HOM05D004808 ORTHO05D005279 1.8e-22 110.2 83 67.5
Glyma.18G118400 Glycine max HOM05D004808 ORTHO05D005279 1.8e-22 110.2 121 51.2
RcHm_v2.0_Chr5g0050681 Rosa chinensis HOM05D004808 ORTHO05D005279 2.4e-22 109.8 83 68.7
ClCG02G022910 Citrullus lanatus HOM05D004808 ORTHO05D005279 3.1e-22 109.4 87 64.4
FAN16G0786 Fragaria x ananassa HOM05D004808 ORTHO05D005279 3.1e-22 109.4 87 65.5
CiPaw.13G151800 Carya illinoinensis HOM05D004808 ORTHO05D005279 4.1e-22 109.0 83 66.3
Sed0009012 Sechium edule HOM05D004808 ORTHO05D005279 4.1e-22 109.0 98 58.2
VMungo0540G2372 Vigna mungo HOM05D004808 ORTHO05D005279 5.3e-22 108.6 108 54.6
Haze_23219 Corylus avellana HOM05D004808 ORTHO05D005279 9.1e-22 107.8 119 53.8
FvH4_3g27990 Fragaria vesca HOM05D004808 ORTHO05D005279 1.2e-21 107.5 83 67.5
FAN11G1822 Fragaria x ananassa HOM05D004808 ORTHO05D005279 1.2e-21 107.5 83 67.5
FAN25G2744 Fragaria x ananassa HOM05D004808 ORTHO05D005279 1.2e-21 107.5 83 67.5
Hund21986 Selenicereus undatus HOM05D004808 ORTHO05D005279 1.2e-21 107.5 138 48.6
Ca_25925_v3 Cicer arietinum L. HOM05D004808 ORTHO05D005279 1.6e-21 107.1 84 69.0
Ca_29949_v3 Cicer arietinum L. HOM05D004808 ORTHO05D005279 1.6e-21 107.1 84 69.0
Nn7g36662 Nelumbo nucifera HOM05D004808 ORTHO05D005279 1.6e-21 107.1 83 65.1
CsaV3_6G039040 Cucumis sativus L. HOM05D004808 ORTHO05D005279 2.0e-21 106.7 90 61.1
TAR633G2565 Trochodendron aralioides HOM05D004808 ORTHO05D005279 3.5e-21 105.9 90 62.2
FAN21G2036 Fragaria x ananassa HOM05D004808 ORTHO05D005279 4.5e-21 105.5 83 66.3
Medtr3g045830 Medicago truncatula HOM05D004808 ORTHO05D005279 4.5e-21 105.5 83 65.1
Prupe.4G267700 Prunus persica HOM05D004808 ORTHO05D005279 4.5e-21 105.5 83 65.1
Potri.001G276800 Populus trichocarpa HOM05D004808 ORTHO05D005279 1.0e-20 104.4 87 62.1
TAR636G2671 Trochodendron aralioides HOM05D004808 ORTHO05D005279 1.0e-20 104.4 83 66.3
MELO3C014565.2 Cucumis melo HOM05D004808 ORTHO05D005279 1.7e-20 103.6 87 62.1
Phvul.006G030100 Phaseolus vulgaris HOM05D004808 ORTHO05D005279 2.2e-20 103.2 82 67.1
PGSC0003DMG400004714 Solanum tuberosum HOM05D004808 ORTHO05D005279 2.9e-20 102.8 96 58.3
HanXRQChr14g0432391 Helianthus annuus HOM05D004808 ORTHO05D005279 3.8e-20 102.4 108 53.7
Lsat_1_v5_gn_2_33621 Lactuca sativa HOM05D004808 ORTHO05D005279 5.0e-20 102.1 85 61.2
THA.LOC104806525 Tarenaya hassleriana HOM05D004808 ORTHO05D005279 6.5e-20 101.7 122 49.2
MBI13_g32777_MAGBIO Magnolia biondii HOM05D004808 ORTHO05D005279 8.5e-20 101.3 108 50.9
PGR102G1223 Punica granatum HOM05D004808 ORTHO05D005279 8.5e-20 101.3 83 62.7
Nitab4.5_0001290g0060 Nicotiana tabacum HOM05D004808 ORTHO05D005279 1.1e-19 100.9 83 63.9
Nitab4.5_0002726g0010 Nicotiana tabacum HOM05D004808 ORTHO05D007773 1.1e-19 100.9 114 52.6
Nitab4.5_0002310g0050 Nicotiana tabacum HOM05D004808 ORTHO05D005279 1.5e-19 100.5 83 63.9
MD03G1167600 Malus domestica HOM05D004808 ORTHO05D005279 2.5e-19 99.8 83 61.4
Manes.02G140500 Manihot esculenta HOM05D004808 ORTHO05D005279 2.5e-19 99.8 107 52.3
Solyc12g099760.2 Solanum lycopersicum HOM05D004808 ORTHO05D005279 2.5e-19 99.8 96 57.3
Sopen12g034390 Solanum pennellii HOM05D004808 ORTHO05D005279 2.5e-19 99.8 96 57.3
MSTRG.12447 Avicennia marina HOM05D004808 ORTHO05D005279 3.2e-19 99.4 83 61.4
Eucgr.J00701 Eucalyptus grandis HOM05D004808 ORTHO05D005279 4.2e-19 99.0 83 61.4
Sc09g0000980 Simmondsia chinensis HOM05D004808 ORTHO05D005279 4.2e-19 99.0 118 49.2
EL10Ac4g10134 Beta vulgaris HOM05D004808 ORTHO05D005279 5.5e-19 98.6 83 62.7
CAN.G575.98 Capsicum annuum HOM05D004808 ORTHO05D005279 5.5e-19 98.6 83 61.4
Dinv05059 Davidia involucrata HOM05D004808 ORTHO05D005279 5.5e-19 98.6 83 63.9
MD11G1186500 Malus domestica HOM05D004808 ORTHO05D005279 5.5e-19 98.6 82 64.6
Atru.chr3.2780 Acer truncatum HOM05D004808 ORTHO05D005279 7.2e-19 98.2 83 59.0
Hund07444 Selenicereus undatus HOM05D004808 ORTHO05D005279 7.2e-19 98.2 84 61.9
EL10Ac4g10133 Beta vulgaris HOM05D004808 ORTHO05D005279 9.4e-19 97.8 83 62.7
EL10Ac4g10157 Beta vulgaris HOM05D004808 ORTHO05D005279 9.4e-19 97.8 83 62.7
Actinidia11660 Actinidia chinensis HOM05D004808 ORTHO05D005279 1.2e-18 97.4 132 43.9
CSS0013669 Camellia sinensis var. sinensis HOM05D004808 ORTHO05D005279 1.2e-18 97.4 82 61.0
CSS0046494 Camellia sinensis var. sinensis HOM05D004808 ORTHO05D005279 1.2e-18 97.4 82 61.0
Sed0021712 Sechium edule HOM05D004808 ORTHO05D005279 1.2e-18 97.4 87 57.5
Nitab4.5_0004018g0080 Nicotiana tabacum HOM05D004808 ORTHO05D005279 1.6e-18 97.1 83 63.9
Sabra09G0054000 Salix brachista HOM05D004808 ORTHO05D005279 1.6e-18 97.1 89 57.3
EL10Ac4g10128 Beta vulgaris HOM05D004808 ORTHO05D005279 2.1e-18 96.7 83 61.4
TPR.G8469 Trifolium pratense HOM05D004808 ORTHO05D005279 2.1e-18 96.7 96 56.2
AUR62000181 Chenopodium quinoa HOM05D004808 ORTHO05D005279 2.7e-18 96.3 83 60.2
AUR62006532 Chenopodium quinoa HOM05D004808 ORTHO05D005279 2.7e-18 96.3 83 60.2
Aa31LG5G2750 Aethionema arabicum HOM05D004808 ORTHO05D005279 3.6e-18 95.9 123 47.2
Solyc11g065110.2 Solanum lycopersicum HOM05D004808 ORTHO05D005279 3.6e-18 95.9 83 62.7
Sopen11g024850 Solanum pennellii HOM05D004808 ORTHO05D005279 3.6e-18 95.9 83 62.7
PGSC0003DMG400031247 Solanum tuberosum HOM05D004808 ORTHO05D005279 3.6e-18 95.9 83 62.7
Actinidia16374 Actinidia chinensis HOM05D004808 ORTHO05D005279 4.7e-18 95.5 84 57.1
ECA238G3426 Erigeron canadensis HOM05D004808 ORTHO05D005279 6.1e-18 95.1 83 60.2
Ciclev10014928m.g Citrus clementina HOM05D004808 ORTHO05D005279 8.0e-18 94.7 83 57.8
Oeu030627.1 Olea europaea HOM05D004808 ORTHO05D005279 8.0e-18 94.7 83 62.7
Peaxi162Scf00004g00419 Petunia axillaris HOM05D004808 ORTHO05D005279 1.8e-17 93.6 114 49.1
Glyma.08G301700 Glycine max HOM05D004808 ORTHO05D005279 2.3e-17 93.2 82 61.0
Thecc.09G249900 Theobroma cacao HOM05D004808 ORTHO05D005279 3.0e-17 92.8 83 60.2
Sabra16G0170900 Salix brachista HOM05D004808 ORTHO05D005279 5.2e-17 92.0 79 62.0
Duzib150G0464 Durio zibethinus HOM05D004808 ORTHO05D005279 6.7e-17 91.7 115 46.1
Oeu043281.1 Olea europaea HOM05D004808 ORTHO05D005279 6.7e-17 91.7 87 57.5
unitig_699.g19143 Utricularia gibba HOM05D004808 ORTHO05D005279 6.7e-17 91.7 83 57.8
Oeu025900.1 Olea europaea HOM05D004808 ORTHO05D005279 1.5e-16 90.5 83 59.0
unitig_27.g25005 Utricularia gibba HOM05D004808 ORTHO05D005279 2.6e-16 89.7 83 56.6
Ah.06g194480 Amaranthus hybridus HOM05D000189 ORTHO05D000474 3.3e-16 89.4 84 54.8
Aqoxy2G00360 Aquilegia oxysepala HOM05D004808 ORTHO05D005279 5.7e-16 88.6 90 47.8
AT4G03250 Arabidopsis thaliana HOM05D004808 ORTHO05D005279 5.7e-16 88.6 87 55.2
Gohir.D13G223000 Gossypium hirsutum HOM05D004808 ORTHO05D005279 5.7e-16 88.6 83 59.0
Gorai.013G254100 Gossypium raimondii HOM05D004808 ORTHO05D005279 5.7e-16 88.6 83 59.0
vmacro04022 Vaccinium macrocarpon HOM05D004808 ORTHO05D005279 5.7e-16 88.6 82 53.7
Gohir.A07G120700 Gossypium hirsutum HOM05D004808 ORTHO05D005279 9.7e-16 87.8 121 43.8
Cc02_g33420 Coffea canephora HOM05D004808 ORTHO05D005279 2.2e-15 86.7 83 53.0
SGA_v2.0_scaffold496G52466 Striga asiatica HOM05D004808 ORTHO05D005279 6.3e-15 85.1 109 44.0
Carub.0006s3381 Capsella rubella HOM05D004808 ORTHO05D005279 8.2e-15 84.7 87 52.9
Gohir.A13G219300 Gossypium hirsutum HOM05D004808 ORTHO05D005279 8.2e-15 84.7 81 59.3
EL10Ac4g10153 Beta vulgaris HOM05D004808 ORTHO05D005279 1.4e-14 84.0 75 61.3
Migut.N02368 Erythranthe guttata HOM05D004808 ORTHO05D005279 1.8e-14 83.6 74 55.4
arahy.Tifrunner.gnm1.ann1.B45LBU Arachis hypogaea HOM05D004808 ORTHO05D005279 2.4e-14 83.2 45 84.4
CARHR251700 Cardamine hirsuta HOM05D004808 ORTHO05D005279 2.4e-14 83.2 100 48.0
Rhsim13G0211200 Rhododendron simsii HOM05D004808 ORTHO05D005279 2.4e-14 83.2 82 50.0
arahy.Tifrunner.gnm1.ann1.45FEHG Arachis hypogaea HOM05D004808 ORTHO05D005279 3.1e-14 82.8 44 88.6
Gorai.004G014700 Gossypium raimondii HOM05D004808 ORTHO05D005279 3.1e-14 82.8 80 55.0
DCAR_023844 Daucus carota HOM05D004808 ORTHO05D000168 4.1e-14 82.4 82 52.4
Hma1.2p1_0382F.1_g140110 Hydrangea macrophylla HOM05D004808 ORTHO05D005279 4.1e-14 82.4 83 54.2
MSTRG.18457 Avicennia marina HOM05D004808 ORTHO05D005279 1.2e-13 80.9 80 55.0
Gohir.D08G020100 Gossypium hirsutum HOM05D004808 ORTHO05D005279 1.6e-13 80.5 80 53.8
Potri.009G071700 Populus trichocarpa HOM05D004808 ORTHO05D005279 1.6e-13 80.5 123 40.7
Actinidia23987 Actinidia chinensis HOM05D004808 ORTHO05D005279 2.7e-13 79.7 83 53.0
PSO339G5168 Papaver somniferum HOM05D004808 ORTHO05D005279 2.7e-13 79.7 83 51.8
PSO384G3775 Papaver somniferum HOM05D004808 ORTHO05D005279 2.7e-13 79.7 83 51.8
AL6G49680 Arabidopsis lyrata HOM05D004808 ORTHO05D005279 3.5e-13 79.3 100 47.0
Thhalv10028592m.g Eutrema salsugineum HOM05D004808 ORTHO05D005279 4.5e-13 79.0 87 49.4
Gohir.A08G010000 Gossypium hirsutum HOM05D004808 ORTHO05D005279 4.5e-13 79.0 80 53.8
Lj1A295G40 Lonicera japonica HOM05D004808 ORTHO05D005279 5.9e-13 78.6 82 51.2
A09p02560 Brassica napus HOM05D004808 ORTHO05D005279 1.0e-12 77.8 87 48.3
BraA09t35902Z Brassica rapa HOM05D004808 ORTHO05D005279 1.0e-12 77.8 87 48.3
COL.COLO4_05197 Corchorus olitorius HOM05D004808 ORTHO05D005279 1.7e-12 77.0 106 43.4
TWI75G1175 Tripterygium wilfordii HOM05D004808 ORTHO05D005279 1.7e-12 77.0 108 47.2
C09p02620 Brassica napus HOM05D004808 ORTHO05D005279 3.8e-12 75.9 87 47.1
BolC9t53190H Brassica oleracea HOM05D004808 ORTHO05D005279 3.8e-12 75.9 87 47.1
SHI27519 Sapria himalayana HOM05D004808 ORTHO05D005279 1.1e-11 74.3 76 55.3
BcaB01g01963 Brassica carinata HOM05D004808 ORTHO05D005279 1.5e-11 73.9 89 47.2
Gorai.001G134800 Gossypium raimondii HOM05D004808 ORTHO05D005279 3.2e-11 72.8 81 49.4
Duzib168G1750 Durio zibethinus HOM05D004808 ORTHO05D005279 7.2e-11 71.6 83 48.2
Lj1A288G35 Lonicera japonica HOM05D004808 ORTHO05D005279 2.1e-10 70.1 75 52.0
PGR119G1869 Punica granatum HOM05D004808 ORTHO05D005279 2.7e-10 69.7 78 56.4
Actinidia06956 Actinidia chinensis HOM05D004808 ORTHO05D005279 8.0e-10 68.2 67 55.2
Nn7g37333 Nelumbo nucifera HOM05D004808 ORTHO05D005279 8.0e-10 68.2 43 69.8
Sp6g03290 Schrenkiella parvula HOM05D004808 ORTHO05D005279 1.8e-09 67.0 55 56.4
Gohir.D07G125000 Gossypium hirsutum HOM05D004808 ORTHO05D005279 4.4e-08 62.4 73 50.7
SGA_v2.0_scaffold29G12262 Striga asiatica HOM05D004808 ORTHO05D005279 1.3e-07 60.8 77 45.5
Migut.D00653 Erythranthe guttata HOM05D004808 ORTHO05D005279 1.7e-07 60.5 68 47.1
arahy.Tifrunner.gnm1.ann1.ZD1VES Arachis hypogaea HOM05D000992 ORTHO05D007525 2.2e-07 60.1 30 83.3
SEGI_24421 Sequoiadendron giganteum HOM05D004808 ORTHO05D005279 2.2e-07 60.1 41 63.4
ATR0745G080 Amborella trichopoda HOM05D004808 ORTHO05D005279 6.3e-07 58.5 69 44.9
Lalb_Chr16g0384011 Lupinus albus HOM05D001439 ORTHO05D002726 2.4e-06 56.6 103 32.0
arahy.Tifrunner.gnm1.ann1.UHY7MZ Arachis hypogaea HOM05D006034 ORTHO05D005279 9.1e-06 54.7 38 76.3


User provided reference genes

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