Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 5.4e-220 767.3 374 100.0
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 2.1e-208 728.8 364 98.1
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 1.0e-157 560.5 373 76.1
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 1.2e-155 553.5 374 75.1
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 3.6e-155 552.0 373 74.3
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 5.5e-148 528.1 373 73.7
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 6.3e-144 514.6 374 72.7
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 7.0e-143 511.1 373 68.6
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 2.0e-142 509.6 373 69.2
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 3.1e-135 485.7 372 68.3
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 3.4e-129 465.7 369 65.3
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 6.6e-125 451.4 370 64.3
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 3.3e-124 449.1 375 65.3
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 6.2e-115 418.3 347 64.0
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 1.8e-114 416.8 342 64.3
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 9.8e-113 411.0 338 63.3
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 1.3e-112 410.6 338 62.4
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 3.5e-110 402.5 338 61.8
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 6.2e-107 391.7 338 62.7
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 1.3e-104 384.0 340 60.9
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 1.1e-103 380.9 377 57.3
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 5.4e-103 378.6 377 57.0
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.1e-102 376.7 373 56.3
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 2.7e-102 376.3 290 65.9
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 1.0e-101 374.4 292 65.8
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 1.3e-101 374.0 339 59.3
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 3.9e-101 372.5 348 57.8
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 5.1e-101 372.1 374 56.1
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 5.1e-101 372.1 368 58.2
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 1.1e-100 370.9 226 77.9
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 2.5e-100 369.8 289 66.4
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 2.5e-100 369.8 223 79.4
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 2.5e-100 369.8 320 60.6
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 5.6e-100 368.6 295 64.4
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 9.5e-100 367.9 380 55.3
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 1.6e-99 367.1 367 56.7
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 2.8e-99 366.3 351 56.7
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 1.1e-98 364.4 359 55.2
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 1.8e-98 363.6 210 81.9
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 8.9e-98 361.3 231 76.6
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 3.4e-97 359.4 317 60.3
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 4.4e-97 359.0 237 73.4
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 4.4e-97 359.0 205 84.9
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 5.8e-97 358.6 292 63.4
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 9.9e-97 357.8 297 63.3
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 1.3e-96 357.5 330 58.2
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 2.2e-96 356.7 295 62.0
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 2.9e-96 356.3 242 71.9
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 2.9e-96 356.3 222 75.7
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 1.4e-95 354.0 303 60.4
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 1.4e-95 354.0 244 71.3
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 1.9e-95 353.6 348 56.3
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.9e-95 353.6 214 78.5
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 1.9e-95 353.6 303 60.1
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 3.2e-95 352.8 212 78.3
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 3.2e-95 352.8 207 80.7
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 4.2e-95 352.4 203 81.8
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 5.4e-95 352.1 206 80.1
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 5.4e-95 352.1 206 80.1
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 7.1e-95 351.7 208 79.3
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 9.2e-95 351.3 256 68.8
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.2e-94 350.9 206 80.1
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 1.6e-94 350.5 225 73.3
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 2.1e-94 350.1 204 80.4
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 4.6e-94 349.0 262 65.6
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 6.0e-94 348.6 287 63.4
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 6.0e-94 348.6 261 65.9
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 2.3e-93 346.7 217 74.7
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 1.1e-92 344.4 294 60.2
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 2.5e-92 343.2 309 57.9
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 4.3e-92 342.4 261 65.1
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 5.6e-92 342.0 297 60.9
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 5.6e-92 342.0 315 56.8
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 1.6e-91 340.5 290 60.0
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 1.6e-91 340.5 290 60.0
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 1.6e-91 340.5 292 63.0
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 1.6e-91 340.5 360 53.9
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 2.1e-91 340.1 294 59.9
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 3.6e-91 339.3 352 54.0
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 3.6e-91 339.3 352 54.0
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 4.7e-91 339.0 279 61.6
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 8.1e-91 338.2 193 79.8
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 1.1e-90 337.8 232 69.0
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 1.4e-90 337.4 237 69.6
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 1.8e-90 337.0 213 74.2
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 1.8e-90 337.0 206 75.2
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 1.8e-90 337.0 206 75.2
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 1.8e-90 337.0 206 75.2
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 1.8e-90 337.0 364 52.7
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 3.1e-90 336.3 294 60.5
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 4.0e-90 335.9 208 75.0
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 4.0e-90 335.9 213 73.2
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 5.3e-90 335.5 206 74.3
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 5.3e-90 335.5 289 58.5
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 6.9e-90 335.1 295 58.0
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 6.9e-90 335.1 204 74.5
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 6.9e-90 335.1 192 80.7
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 9.0e-90 334.7 192 80.2
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 9.0e-90 334.7 292 59.2
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.2e-89 334.3 234 69.7
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 2.0e-89 333.6 294 58.8
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 2.6e-89 333.2 295 59.3
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 9.9e-89 331.3 204 74.5
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 1.3e-88 330.9 223 69.1
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 4.6e-86 322.4 295 57.6
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 1.7e-85 320.5 224 70.1
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.1e-84 317.8 287 56.1
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 4.3e-84 315.8 389 48.8
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 9.6e-84 314.7 206 73.3
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 1.3e-83 314.3 299 56.2
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 4.8e-83 312.4 198 73.7
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 8.1e-83 311.6 223 66.4
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.1e-82 311.2 198 73.7
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.4e-82 310.8 293 54.3
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.5e-81 307.4 199 71.4
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 1.1e-79 301.2 291 54.6
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.0e-77 294.7 200 66.5
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 8.7e-77 291.6 161 81.4
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 2.0e-73 280.4 245 54.7
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 3.4e-73 279.6 162 75.9
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 8.4e-72 275.0 145 86.2
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 2.1e-70 270.4 161 75.2
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 4.3e-68 262.7 201 57.7
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 3.1e-66 256.5 320 46.6
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 3.1e-66 256.5 150 75.3
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 2.9e-64 250.0 231 58.9
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 6.7e-61 238.8 146 76.7
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 1.9e-60 237.3 242 55.0
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 4.5e-57 226.1 209 52.2
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 3.7e-51 206.5 121 74.4
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 6.5e-48 195.7 152 64.5
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 1.5e-44 184.5 156 57.7
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 1.2e-41 174.9 177 47.5
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 1.1e-26 125.2 116 50.0
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 1.5e-23 114.8 190 42.6
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 5.5e-23 112.8 83 55.4
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 1.3e-16 91.7 209 35.9
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 5.0e-16 89.7 158 38.0
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 8.6e-16 89.0 92 54.3
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 5.7e-12 76.3 140 40.7
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 1.7e-11 74.7 129 40.3
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 5.4e-10 69.7 128 39.1
EL10Ac8g18949 Beta vulgaris HOM05D005195 ORTHO05D006088 9.5e-07 58.9 89 40.4
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 4.7e-06 56.6 43 67.4


User provided reference genes

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