Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.QI9TW4 Arachis hypogaea HOM05D006673 ORTHO05D008458 1.6e-91 339.3 168 100.0
arahy.Tifrunner.gnm1.ann1.P1HIL5 Arachis hypogaea HOM05D006673 ORTHO05D008458 1.7e-35 153.3 119 72.3
Lj4g0022593 Lotus japonicus HOM05D006673 ORTHO05D008458 4.5e-25 118.6 118 57.6
Glyma.08G091700 Glycine max HOM05D006673 ORTHO05D008458 1.5e-23 113.6 119 56.3
VMungo0251G3148 Vigna mungo HOM05D006673 ORTHO05D008458 4.2e-23 112.1 119 55.5
Phvul.002G185500 Phaseolus vulgaris HOM05D006673 ORTHO05D008458 5.2e-21 105.1 119 52.9
Lalb_Chr13g0293391 Lupinus albus HOM05D006673 ORTHO05D008458 2.6e-20 102.8 119 52.9
Haze_12539 Corylus avellana HOM05D006673 ORTHO05D008458 2.2e-19 99.8 126 53.2
CiPaw.05G097000 Carya illinoinensis HOM05D006673 ORTHO05D008458 4.9e-19 98.6 126 50.8
TPR.G11866 Trifolium pratense HOM05D006673 ORTHO05D008458 1.2e-17 94.0 122 50.0
Dinv29754 Davidia involucrata HOM05D006673 ORTHO05D008458 2.7e-17 92.8 119 50.4
Psat6g087440 Pisum sativum HOM05D006673 ORTHO05D008458 2.7e-17 92.8 122 49.2
QL02p002326 Quercus lobata HOM05D006673 ORTHO05D008458 1.3e-16 90.5 126 51.6
Ca_18201_v3 Cicer arietinum L. HOM05D006673 ORTHO05D008458 2.9e-16 89.4 124 50.0
MD16G1130700 Malus domestica HOM05D006673 ORTHO05D008458 3.3e-15 85.9 118 41.5
BraA09t36893Z Brassica rapa HOM05D006673 ORTHO05D008458 4.3e-15 85.5 127 45.7
Cpa.g.sc38.24 Carica papaya HOM05D006673 ORTHO05D008458 4.3e-15 85.5 131 46.6
Potri.001G071700 Populus trichocarpa HOM05D006673 ORTHO05D008458 4.3e-15 85.5 122 47.5
Aa31LG8G16640 Aethionema arabicum HOM05D006673 ORTHO05D008458 5.6e-15 85.1 119 46.2
AT2G19640 Arabidopsis thaliana HOM05D006673 ORTHO05D008458 5.6e-15 85.1 126 44.4
A09p12490 Brassica napus HOM05D006673 ORTHO05D008458 7.3e-15 84.7 127 45.7
Sabra01G0050400 Salix brachista HOM05D006673 ORTHO05D008458 7.3e-15 84.7 122 46.7
Thhalv10002010m.g Eutrema salsugineum HOM05D006673 ORTHO05D008458 9.5e-15 84.3 125 42.4
Lsat_1_v5_gn_3_33341 Lactuca sativa HOM05D006673 ORTHO05D008458 1.2e-14 84.0 118 47.5
BcaC04g22837 Brassica carinata HOM05D006673 ORTHO05D008458 2.1e-14 83.2 127 46.5
Carub.0003s3394 Capsella rubella HOM05D006673 ORTHO05D008458 2.1e-14 83.2 125 44.8
Duzib151G0613 Durio zibethinus HOM05D006673 ORTHO05D008458 2.1e-14 83.2 126 45.2
C09p14800 Brassica napus HOM05D006673 ORTHO05D008458 2.8e-14 82.8 129 45.0
BolC9t54380H Brassica oleracea HOM05D006673 ORTHO05D008458 2.8e-14 82.8 129 45.0
Manes.10G153800 Manihot esculenta HOM05D006673 ORTHO05D008458 6.1e-14 81.6 128 45.3
TWI36G0954 Tripterygium wilfordii HOM05D006673 ORTHO05D008458 8.0e-14 81.3 119 47.1
CARHR110080 Cardamine hirsuta HOM05D006673 ORTHO05D008458 1.0e-13 80.9 119 47.1
RcHm_v2.0_Chr4g0428221 Rosa chinensis HOM05D006673 ORTHO05D008458 1.0e-13 80.9 124 44.4
MD13G1134900 Malus domestica HOM05D006673 ORTHO05D008458 1.4e-13 80.5 119 41.2
Thecc.04G298100 Theobroma cacao HOM05D006673 ORTHO05D008458 1.4e-13 80.5 118 48.3
AL3G48590 Arabidopsis lyrata HOM05D006673 ORTHO05D008458 3.0e-13 79.3 119 45.4
CARHR237330 Cardamine hirsuta HOM05D006673 ORTHO05D008458 3.0e-13 79.3 119 45.4
Gohir.A09G235100 Gossypium hirsutum HOM05D006673 ORTHO05D008458 5.2e-13 78.6 120 45.0
PGR119G0473 Punica granatum HOM05D006673 ORTHO05D008458 6.8e-13 78.2 117 44.4
Sp3g33010 Schrenkiella parvula HOM05D006673 ORTHO05D008458 6.8e-13 78.2 119 45.4
THA.LOC104820538 Tarenaya hassleriana HOM05D006673 ORTHO05D008458 6.8e-13 78.2 125 43.2
CSS0030693 Camellia sinensis var. sinensis HOM05D006673 ORTHO05D008458 1.5e-12 77.0 123 43.9
Eucgr.J01690 Eucalyptus grandis HOM05D006673 ORTHO05D008458 2.0e-12 76.6 126 46.8
Eucgr.J01694 Eucalyptus grandis HOM05D006673 ORTHO05D008458 2.6e-12 76.3 126 46.8
Migut.I00849 Erythranthe guttata HOM05D006673 ORTHO05D008458 3.4e-12 75.9 122 45.1
MSTRG.22700 Avicennia marina HOM05D006673 ORTHO05D008458 4.4e-12 75.5 117 43.6
Gorai.006G259000 Gossypium raimondii HOM05D006673 ORTHO05D008458 4.4e-12 75.5 120 44.2
SalBow2G2533 Salvia bowleyana HOM05D006673 ORTHO05D008458 4.4e-12 75.5 117 43.6
HanXRQChr06g0175351 Helianthus annuus HOM05D006673 ORTHO05D008458 5.7e-12 75.1 119 39.5
Cc03_g11070 Coffea canephora HOM05D006673 ORTHO05D008458 7.5e-12 74.7 121 43.8
Gohir.D09G235900 Gossypium hirsutum HOM05D006673 ORTHO05D008458 7.5e-12 74.7 120 44.2
Atru.chr12.1483 Acer truncatum HOM05D006673 ORTHO05D008458 1.3e-11 73.9 124 41.1
ECA246G2067 Erigeron canadensis HOM05D006673 ORTHO05D008458 1.3e-11 73.9 127 41.7
FvH4_4g22020 Fragaria vesca HOM05D006673 ORTHO05D008458 1.3e-11 73.9 118 44.1
FAN12G2690 Fragaria x ananassa HOM05D006673 ORTHO05D008458 1.3e-11 73.9 118 44.1
GSVIVG01001133001 Vitis vinifera HOM05D006673 ORTHO05D008458 1.3e-11 73.9 130 41.5
Hma1.2p1_0738F.1_g211070 Hydrangea macrophylla HOM05D006673 ORTHO05D008458 1.7e-11 73.6 118 45.8
unitig_744.g24339 Utricularia gibba HOM05D006673 ORTHO05D008458 1.7e-11 73.6 117 39.3
Prupe.1G210500 Prunus persica HOM05D006673 ORTHO05D008458 2.9e-11 72.8 101 42.6
Sc02g0002970 Simmondsia chinensis HOM05D006673 ORTHO05D008458 2.9e-11 72.8 131 43.5
SGA_v2.0_scaffold37G14814 Striga asiatica HOM05D006673 ORTHO05D008458 3.7e-11 72.4 117 41.9
AUR62013717 Chenopodium quinoa HOM05D006673 ORTHO05D008458 1.1e-10 70.9 132 40.2
Ciclev10028653m.g Citrus clementina HOM05D006673 ORTHO05D008458 1.1e-10 70.9 99 46.5
Rhsim01G0183300 Rhododendron simsii HOM05D006673 ORTHO05D008458 1.1e-10 70.9 127 39.4
Solyc09g090030.2 Solanum lycopersicum HOM05D006673 ORTHO05D008458 1.1e-10 70.9 116 42.2
Sopen09g032940 Solanum pennellii HOM05D006673 ORTHO05D008458 1.1e-10 70.9 116 42.2
DCAR_030439 Daucus carota HOM05D006673 ORTHO05D008458 1.4e-10 70.5 139 36.7
PSO675G2922 Papaver somniferum HOM05D006673 ORTHO05D008458 1.8e-10 70.1 118 43.2
Aqoxy5G02914 Aquilegia oxysepala HOM05D006673 ORTHO05D008458 2.4e-10 69.7 114 42.1
MBI07_g11065_MAGBIO Magnolia biondii HOM05D006673 ORTHO05D008458 2.4e-10 69.7 115 43.5
CAN.G793.53 Capsicum annuum HOM05D006673 ORTHO05D008458 3.2e-10 69.3 145 37.2
FAN07G2695 Fragaria x ananassa HOM05D006673 ORTHO05D008458 3.2e-10 69.3 117 41.9
Lalb_Chr05g0215481 Lupinus albus HOM05D006673 ORTHO05D008458 4.1e-10 68.9 121 39.7
AUR62004124 Chenopodium quinoa HOM05D006673 ORTHO05D008458 5.4e-10 68.6 126 41.3
Hund17075 Selenicereus undatus HOM05D006673 ORTHO05D008458 7.0e-10 68.2 134 41.8
Nn4g22041 Nelumbo nucifera HOM05D006673 ORTHO05D008458 9.2e-10 67.8 116 44.0
ATR0582G160 Amborella trichopoda HOM05D006673 ORTHO05D008458 1.2e-09 67.4 116 36.2
COL.COLO4_34640 Corchorus olitorius HOM05D006673 ORTHO05D008458 1.2e-09 67.4 110 47.3
Nitab4.5_0011884g0020 Nicotiana tabacum HOM05D006673 ORTHO05D000046 1.2e-09 67.4 114 41.2
Ah.05g173360 Amaranthus hybridus HOM05D006673 ORTHO05D008458 1.6e-09 67.0 131 38.9
PGSC0003DMG400017176 Solanum tuberosum HOM05D006673 ORTHO05D008458 1.6e-09 67.0 116 39.7
TAR371G1265 Trochodendron aralioides HOM05D006673 ORTHO05D008458 1.6e-09 67.0 114 41.2
Lj3P1076T29 Lonicera japonica HOM05D006673 ORTHO05D008458 2.0e-09 66.6 99 41.4
TAR371G1163 Trochodendron aralioides HOM05D006673 ORTHO05D008458 2.7e-09 66.2 97 45.4
Actinidia22101 Actinidia chinensis HOM05D006673 ORTHO05D008458 5.9e-09 65.1 115 41.7
EL10Ac1g00795 Beta vulgaris HOM05D006673 ORTHO05D008458 5.9e-09 65.1 122 38.5
EL10Ac1g00801 Beta vulgaris HOM05D006673 ORTHO05D008458 5.9e-09 65.1 119 37.8
CDE02G2773 Ceratophyllum demersum HOM05D006673 ORTHO05D008458 7.8e-09 64.7 115 38.3
Medtr5g027020 Medicago truncatula HOM05D006673 ORTHO05D008458 2.3e-08 63.2 119 35.3
HPP92_003450 Vanilla planifolia HOM05D006673 ORTHO05D008458 3.0e-08 62.8 107 39.3
Glyma.01G148700 Glycine max HOM05D006673 ORTHO05D008458 5.0e-08 62.0 120 37.5
TPR.G29135 Trifolium pratense HOM05D006673 ORTHO05D008458 5.0e-08 62.0 117 35.9
Ca_25111_v3 Cicer arietinum L. HOM05D006673 ORTHO05D008458 6.6e-08 61.6 119 35.3
SEGI_08209 Sequoiadendron giganteum HOM05D006673 ORTHO05D008458 6.6e-08 61.6 129 35.7
AagrBONN_evm.TU.Sc2ySwM_368.2743 Anthoceros agrestis HOM05D006673 ORTHO05D008458 4.3e-07 58.9 117 34.2
Psat2g141640 Pisum sativum HOM05D006673 ORTHO05D008458 7.3e-07 58.2 119 33.6
VMungo1215G0951 Vigna mungo HOM05D006673 ORTHO05D008458 1.6e-06 57.0 119 37.8
Medtr1g038390 Medicago truncatula HOM05D006673 ORTHO05D008458 2.8e-06 56.2 49 59.2
Os08g0205300 Oryza sativa ssp. japonica HOM05D006673 ORTHO05D008458 2.8e-06 56.2 118 33.9
RcHm_v2.0_Chr4g0427831 Rosa chinensis HOM05D006673 ORTHO05D008458 6.2e-06 55.1 45 62.2


User provided reference genes

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