Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.QCQ2D8 Arachis hypogaea HOM05D005386 ORTHO05D006981 5.6e-59 230.7 115 100.0
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 5.7e-27 124.4 122 59.8
arahy.Tifrunner.gnm1.ann1.X9D9S7 Arachis hypogaea HOM05D001287 ORTHO05D002418 1.3e-26 123.2 86 79.1
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 1.2e-24 116.7 102 64.7
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 2.7e-21 105.5 114 56.1
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 1.2e-16 90.1 48 93.8
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 5.0e-15 84.7 49 85.7
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 5.0e-15 84.7 49 85.7
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 2.5e-14 82.4 48 87.5
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 1.0e-12 77.0 49 79.6
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 2.3e-12 75.9 49 73.5
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 4.3e-11 71.6 49 67.3
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 5.7e-11 71.2 49 65.3
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 5.7e-11 71.2 49 67.3
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 1.3e-10 70.1 49 65.3
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 2.2e-10 69.3 49 71.4
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.8e-10 68.9 49 63.3
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 3.7e-10 68.6 49 65.3
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 3.7e-10 68.6 49 65.3
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 6.3e-10 67.8 49 65.3
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 8.2e-10 67.4 49 67.3
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 8.2e-10 67.4 49 67.3
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 8.2e-10 67.4 49 63.3
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 8.2e-10 67.4 49 67.3
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 1.1e-09 67.0 49 65.3
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 1.4e-09 66.6 49 67.3
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.4e-09 66.6 49 65.3
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 1.8e-09 66.2 49 65.3
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 1.8e-09 66.2 49 65.3
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 1.8e-09 66.2 49 67.3
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 2.4e-09 65.9 49 65.3
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 2.4e-09 65.9 49 63.3
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 3.1e-09 65.5 49 65.3
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 4.1e-09 65.1 49 63.3
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 4.1e-09 65.1 49 65.3
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 5.3e-09 64.7 49 65.3
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 5.3e-09 64.7 49 65.3
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 6.9e-09 64.3 33 93.9
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 1.2e-08 63.5 49 63.3
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 1.5e-08 63.2 49 59.2
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 1.5e-08 63.2 49 65.3
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 1.5e-08 63.2 49 61.2
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 2.0e-08 62.8 49 61.2
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 2.6e-08 62.4 49 61.2
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 2.6e-08 62.4 49 61.2
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 2.6e-08 62.4 49 61.2
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 2.6e-08 62.4 49 61.2
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 2.6e-08 62.4 49 61.2
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 2.6e-08 62.4 49 61.2
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 3.4e-08 62.0 49 63.3
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 4.5e-08 61.6 49 63.3
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 5.9e-08 61.2 49 63.3
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 5.9e-08 61.2 49 63.3
arahy.Tifrunner.gnm1.ann1.M13D0Y Arachis hypogaea HOM05D005386 ORTHO05D006981 7.7e-08 60.8 37 83.8
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 7.7e-08 60.8 49 55.1
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 7.7e-08 60.8 49 55.1
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 7.7e-08 60.8 49 59.2
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.0e-07 60.5 49 63.3
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 1.0e-07 60.5 49 59.2
arahy.Tifrunner.gnm1.ann1.YZK62K Arachis hypogaea HOM05D005386 ORTHO05D006981 1.3e-07 60.1 33 87.9
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 1.3e-07 60.1 49 55.1
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 1.7e-07 59.7 33 87.9
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.7e-07 59.7 49 63.3
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 1.7e-07 59.7 49 63.3
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 1.7e-07 59.7 49 57.1
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 2.2e-07 59.3 49 59.2
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 2.9e-07 58.9 49 53.1
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 5.0e-07 58.2 49 59.2
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 5.0e-07 58.2 51 60.8
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 5.0e-07 58.2 49 55.1
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 6.5e-07 57.8 49 51.0
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 8.5e-07 57.4 49 61.2
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 2.5e-06 55.8 49 51.0
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 2.5e-06 55.8 49 61.2
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 2.5e-06 55.8 45 62.2
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 4.2e-06 55.1 49 59.2
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 4.2e-06 55.1 49 59.2
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 4.2e-06 55.1 49 59.2
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 4.2e-06 55.1 49 49.0
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 4.2e-06 55.1 49 51.0
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 5.5e-06 54.7 49 59.2
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 5.5e-06 54.7 49 59.2
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 7.2e-06 54.3 49 59.2


User provided reference genes

Program Settings