Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.QBUW59 Arachis hypogaea HOM05D002560 ORTHO05D013637 6.7e-105 384.0 194 100.0
arahy.Tifrunner.gnm1.ann1.DD37CG Arachis hypogaea HOM05D002560 ORTHO05D013637 1.3e-103 379.8 194 99.0
arahy.Tifrunner.gnm1.ann1.UH8YKH Arachis hypogaea HOM05D002560 ORTHO05D013637 4.7e-50 201.8 103 98.1
arahy.Tifrunner.gnm1.ann1.7K02KP Arachis hypogaea HOM05D002560 ORTHO05D003782 1.5e-48 196.8 100 98.0
arahy.Tifrunner.gnm1.ann1.PPI0JG Arachis hypogaea HOM05D002560 ORTHO05D003782 1.5e-48 196.8 100 98.0
Ca_07738_v3 Cicer arietinum L. HOM05D002560 ORTHO05D003782 3.4e-48 195.7 100 96.0
Lalb_Chr19g0124111 Lupinus albus HOM05D002560 ORTHO05D003782 3.4e-48 195.7 100 95.0
arahy.Tifrunner.gnm1.ann1.D1231E Arachis hypogaea HOM05D002560 ORTHO05D003782 4.4e-48 195.3 100 97.0
Medtr7g072330 Medicago truncatula HOM05D002560 ORTHO05D003782 7.5e-48 194.5 100 95.0
Psat3g122440 Pisum sativum HOM05D002560 ORTHO05D003782 1.3e-47 193.7 100 94.0
arahy.Tifrunner.gnm1.ann1.IZK0HU Arachis hypogaea HOM05D002560 ORTHO05D003782 1.7e-47 193.4 100 96.0
Glyma.09G278500 Glycine max HOM05D002560 ORTHO05D003782 1.7e-47 193.4 100 96.0
TPR.G35291 Trifolium pratense HOM05D002560 ORTHO05D003782 2.2e-47 193.0 101 93.1
Glyma.18G210300 Glycine max HOM05D002560 ORTHO05D003782 1.1e-46 190.7 100 94.0
TPR.G35288 Trifolium pratense HOM05D002560 ORTHO05D003782 1.1e-46 190.7 100 93.0
Lj1g0007869 Lotus japonicus HOM05D002560 ORTHO05D003782 3.2e-46 189.1 100 93.0
Phvul.008G087800 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 3.0e-44 182.6 100 92.0
VMungo1383G3009 Vigna mungo HOM05D002560 ORTHO05D003782 3.9e-44 182.2 100 91.0
arahy.Tifrunner.gnm1.ann1.6VEX49 Arachis hypogaea HOM05D002560 ORTHO05D003782 8.6e-44 181.0 100 87.0
arahy.Tifrunner.gnm1.ann1.TV2NT7 Arachis hypogaea HOM05D002560 ORTHO05D003782 1.1e-43 180.6 98 89.8
Phvul.008G088100 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 1.1e-43 180.6 100 90.0
MD04G1169600 Malus domestica HOM05D002560 ORTHO05D003782 1.5e-43 180.3 98 89.8
TAR369G0139 Trochodendron aralioides HOM05D002560 ORTHO05D003782 4.3e-43 178.7 98 86.7
EL10Ac7g17038 Beta vulgaris HOM05D002560 ORTHO05D003782 7.3e-43 177.9 98 88.8
Prupe.6G288100 Prunus persica HOM05D002560 ORTHO05D003782 7.3e-43 177.9 98 88.8
MD12G1183600 Malus domestica HOM05D002560 ORTHO05D003782 2.1e-42 176.4 98 88.8
Hund19809 Selenicereus undatus HOM05D002560 ORTHO05D003782 2.8e-42 176.0 98 86.7
AUR62006330 Chenopodium quinoa HOM05D002560 ORTHO05D003782 4.7e-42 175.3 98 86.7
AUR62026368 Chenopodium quinoa HOM05D002560 ORTHO05D003782 4.7e-42 175.3 98 86.7
Dinv35441 Davidia involucrata HOM05D002560 ORTHO05D003782 4.7e-42 175.3 98 85.7
Nn2g13307 Nelumbo nucifera HOM05D002560 ORTHO05D003782 6.2e-42 174.9 98 86.7
CANSAT35G0319 Cannabis sativa HOM05D002560 ORTHO05D003782 1.0e-41 174.1 134 69.4
Cpa.g.sc86.9 Carica papaya HOM05D002560 ORTHO05D013637 1.8e-41 173.3 98 85.7
ClCG04G006550 Citrullus lanatus HOM05D002560 ORTHO05D003782 3.1e-41 172.6 98 84.7
GSVIVG01030232001 Vitis vinifera HOM05D002560 ORTHO05D003782 4.0e-41 172.2 98 82.7
Ciclev10010918m.g Citrus clementina HOM05D002560 ORTHO05D003782 5.2e-41 171.8 97 85.6
Lj3C943G3 Lonicera japonica HOM05D002560 ORTHO05D003782 5.2e-41 171.8 100 83.0
Sed0022812 Sechium edule HOM05D002560 ORTHO05D003782 8.9e-41 171.0 98 84.7
Cfa017080 Carpinus fangiana HOM05D002560 ORTHO05D003782 1.5e-40 170.2 96 86.5
Haze_21118 Corylus avellana HOM05D002560 ORTHO05D003782 1.5e-40 170.2 96 86.5
CAN.G1189.1 Capsicum annuum HOM05D002560 ORTHO05D003782 2.6e-40 169.5 96 85.4
CsaV3_4G026950 Cucumis sativus L. HOM05D002560 ORTHO05D003782 2.6e-40 169.5 98 83.7
PSO017G3901 Papaver somniferum HOM05D002560 ORTHO05D003782 3.4e-40 169.1 100 81.0
PSO170G0779 Papaver somniferum HOM05D002560 ORTHO05D003782 3.4e-40 169.1 100 81.0
Gorai.011G130300 Gossypium raimondii HOM05D002560 ORTHO05D003782 4.4e-40 168.7 96 86.5
Actinidia11535 Actinidia chinensis HOM05D002560 ORTHO05D003782 9.8e-40 167.5 143 64.3
CDE04G1751 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 9.8e-40 167.5 97 82.5
Duzib212G0261 Durio zibethinus HOM05D002560 ORTHO05D003782 9.8e-40 167.5 96 85.4
Rhsim04G0123300 Rhododendron simsii HOM05D002560 ORTHO05D003782 9.8e-40 167.5 98 82.7
Gohir.D10G118500 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.3e-39 167.2 96 85.4
Nitab4.5_0004394g0020 Nicotiana tabacum HOM05D002560 ORTHO05D003782 1.3e-39 167.2 96 84.4
Peaxi162Scf00744g00021 Petunia axillaris HOM05D002560 ORTHO05D003782 1.3e-39 167.2 95 85.3
Solyc09g014780.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 1.3e-39 167.2 96 84.4
Sopen09g007660 Solanum pennellii HOM05D002560 ORTHO05D003782 1.3e-39 167.2 96 84.4
PGSC0003DMG400017035 Solanum tuberosum HOM05D002560 ORTHO05D003782 1.3e-39 167.2 96 84.4
Ah.08g209810 Amaranthus hybridus HOM05D002560 ORTHO05D003782 1.7e-39 166.8 98 81.6
AUR62006388 Chenopodium quinoa HOM05D002560 ORTHO05D003782 1.7e-39 166.8 98 82.7
Duzib268G0573 Durio zibethinus HOM05D002560 ORTHO05D003782 1.7e-39 166.8 96 85.4
Gohir.A10G147600 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.7e-39 166.8 96 85.4
Lalb_Chr01g0023591 Lupinus albus HOM05D002560 ORTHO05D003782 1.7e-39 166.8 101 84.2
TAR623G1646 Trochodendron aralioides HOM05D002560 ORTHO05D003782 1.7e-39 166.8 98 84.7
CiPaw.10G163200 Carya illinoinensis HOM05D002560 ORTHO05D003782 2.2e-39 166.4 96 84.4
COL.COLO4_08633 Corchorus olitorius HOM05D002560 ORTHO05D003782 2.9e-39 166.0 96 85.4
AUR62029728 Chenopodium quinoa HOM05D002560 ORTHO05D003782 4.9e-39 165.2 98 79.6
HanXRQChr10g0288601 Helianthus annuus HOM05D002560 ORTHO05D003782 6.4e-39 164.9 105 79.0
Lsat_1_v5_gn_9_38100 Lactuca sativa HOM05D002560 ORTHO05D003782 6.4e-39 164.9 105 79.0
Sc20g0006790 Simmondsia chinensis HOM05D002560 ORTHO05D003782 6.4e-39 164.9 98 80.6
TWI53G1929 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 6.4e-39 164.9 98 84.7
Cpa.g.sc86.11 Carica papaya HOM05D002560 ORTHO05D013637 8.3e-39 164.5 97 82.5
ECA247G0799 Erigeron canadensis HOM05D002560 ORTHO05D003782 8.3e-39 164.5 104 79.8
HPP92_015583 Vanilla planifolia HOM05D002560 ORTHO05D003782 1.4e-38 163.7 97 79.4
Actinidia20781 Actinidia chinensis HOM05D002560 ORTHO05D003782 1.9e-38 163.3 98 80.6
Hund03758 Selenicereus undatus HOM05D002560 ORTHO05D003782 1.9e-38 163.3 98 84.7
Migut.J00073 Erythranthe guttata HOM05D002560 ORTHO05D003782 3.2e-38 162.5 98 80.6
TWI77G0423 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 4.1e-38 162.2 98 82.7
CDE12G0125 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 5.4e-38 161.8 97 79.4
Hma1.2p1_1349F.1_g277330 Hydrangea macrophylla HOM05D002560 ORTHO05D013637 7.0e-38 161.4 146 61.0
MBI15_g10510_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D003782 9.2e-38 161.0 97 82.5
QL07p033277 Quercus lobata HOM05D002560 ORTHO05D003782 1.2e-37 160.6 98 80.6
Duzib151G0314 Durio zibethinus HOM05D002560 ORTHO05D003782 1.6e-37 160.2 96 82.3
HanXRQChr15g0463501 Helianthus annuus HOM05D002560 ORTHO05D003782 1.6e-37 160.2 104 77.9
Aa31LG1G23430 Aethionema arabicum HOM05D002560 ORTHO05D003782 2.7e-37 159.5 97 82.5
Thecc.04G156800 Theobroma cacao HOM05D002560 ORTHO05D003782 2.7e-37 159.5 96 80.2
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 3.5e-37 159.1 97 77.3
CARHR083160 Cardamine hirsuta HOM05D002560 ORTHO05D003782 4.6e-37 158.7 98 79.6
FvH4_6g10400 Fragaria vesca HOM05D002560 ORTHO05D003782 4.6e-37 158.7 118 69.5
FAN05G0561 Fragaria x ananassa HOM05D002560 ORTHO05D003782 4.6e-37 158.7 118 69.5
FAN05G5301 Fragaria x ananassa HOM05D002560 ORTHO05D003782 4.6e-37 158.7 118 69.5
FAN09G2734 Fragaria x ananassa HOM05D002560 ORTHO05D003782 4.6e-37 158.7 118 69.5
FAN14G2820 Fragaria x ananassa HOM05D002560 ORTHO05D003782 4.6e-37 158.7 118 69.5
Sc02g0000740 Simmondsia chinensis HOM05D002560 ORTHO05D003782 4.6e-37 158.7 98 78.6
CiPaw.09G217200 Carya illinoinensis HOM05D002560 ORTHO05D003782 6.0e-37 158.3 96 80.2
Manes.08G174400 Manihot esculenta HOM05D002560 ORTHO05D003782 6.0e-37 158.3 97 82.5
Aa31LG5G18820 Aethionema arabicum HOM05D002560 ORTHO05D003782 7.8e-37 157.9 98 79.6
Aqoxy4G02161 Aquilegia oxysepala HOM05D002560 ORTHO05D003782 7.8e-37 157.9 106 75.5
AL3G19840 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 7.8e-37 157.9 98 78.6
AT3G08850 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 7.8e-37 157.9 98 78.6
Thhalv10019904m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 7.8e-37 157.9 98 78.6
Nn2g11069 Nelumbo nucifera HOM05D002560 ORTHO05D003782 7.8e-37 157.9 98 82.7
Sp3g07250 Schrenkiella parvula HOM05D002560 ORTHO05D003782 7.8e-37 157.9 98 78.6
THA.LOC104823313 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 7.8e-37 157.9 98 80.6
Actinidia29053 Actinidia chinensis HOM05D002560 ORTHO05D003782 1.0e-36 157.5 143 60.8
Cc06_g00590 Coffea canephora HOM05D002560 ORTHO05D003782 1.0e-36 157.5 98 76.5
Atru.chr8.2363 Acer truncatum HOM05D002560 ORTHO05D013637 1.3e-36 157.1 97 77.3
THA.LOC104827066 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 1.3e-36 157.1 98 79.6
Sabra06G0083000 Salix brachista HOM05D002560 ORTHO05D003782 1.7e-36 156.8 97 76.3
CSS0020454 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 2.3e-36 156.4 97 77.3
Manes.09G114600 Manihot esculenta HOM05D002560 ORTHO05D003782 2.3e-36 156.4 97 81.4
PGR004G0247 Punica granatum HOM05D002560 ORTHO05D003782 2.3e-36 156.4 98 78.6
Oeu057979.2 Olea europaea HOM05D002560 ORTHO05D003782 3.0e-36 156.0 98 77.6
MSTRG.18962 Avicennia marina HOM05D002560 ORTHO05D003782 3.9e-36 155.6 98 78.6
Os12g0110000 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 5.0e-36 155.2 99 78.8
Glyma.09G278700 Glycine max HOM05D002560 ORTHO05D013637 6.6e-36 154.8 92 84.8
HanXRQChr10g0288611 Helianthus annuus HOM05D002560 ORTHO05D003782 6.6e-36 154.8 134 63.4
RcHm_v2.0_Chr3g0461291 Rosa chinensis HOM05D002560 ORTHO05D003782 6.6e-36 154.8 115 70.4
BcaB04g18570 Brassica carinata HOM05D002560 ORTHO05D003782 8.6e-36 154.5 98 77.6
BcaC01g04199 Brassica carinata HOM05D002560 ORTHO05D003782 8.6e-36 154.5 98 77.6
BolC3t16666H Brassica oleracea HOM05D002560 ORTHO05D003782 8.6e-36 154.5 98 77.6
BraA03t12804Z Brassica rapa HOM05D002560 ORTHO05D003782 8.6e-36 154.5 98 77.6
Carub.0003s0796 Capsella rubella HOM05D002560 ORTHO05D003782 8.6e-36 154.5 98 78.6
Sp6g41030 Schrenkiella parvula HOM05D002560 ORTHO05D003782 8.6e-36 154.5 97 78.4
Gohir.A02G005400 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.1e-35 154.1 96 81.2
Gohir.D02G005900 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.1e-35 154.1 96 81.2
Gorai.005G006600 Gossypium raimondii HOM05D002560 ORTHO05D003782 1.1e-35 154.1 96 81.2
THA.LOC104816173 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 1.5e-35 153.7 98 77.6
TAR636G3231 Trochodendron aralioides HOM05D002560 ORTHO05D003782 1.5e-35 153.7 92 80.4
vmacro20346 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 1.5e-35 153.7 97 78.4
Zm00001eb404940 Zea mays HOM05D002560 ORTHO05D003782 1.5e-35 153.7 99 75.8
BcaC05g29622 Brassica carinata HOM05D002560 ORTHO05D003782 2.5e-35 152.9 98 77.6
A05p39970 Brassica napus HOM05D002560 ORTHO05D003782 2.5e-35 152.9 98 77.6
C05p59010 Brassica napus HOM05D002560 ORTHO05D003782 2.5e-35 152.9 98 77.6
BolC5t34554H Brassica oleracea HOM05D002560 ORTHO05D003782 2.5e-35 152.9 98 77.6
Os11g0109933 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 2.5e-35 152.9 99 77.8
Potri.016G132000 Populus trichocarpa HOM05D002560 ORTHO05D003782 2.5e-35 152.9 97 75.3
MSTRG.5523 Avicennia marina HOM05D002560 ORTHO05D003782 5.6e-35 151.8 98 74.5
FAN02G0292 Fragaria x ananassa HOM05D002560 ORTHO05D003782 7.3e-35 151.4 118 67.8
AL6G10260 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 9.5e-35 151.0 97 77.3
DCAR_015351 Daucus carota HOM05D002560 ORTHO05D003782 9.5e-35 151.0 98 75.5
Sopen10g027930 Solanum pennellii HOM05D002560 ORTHO05D013637 9.5e-35 151.0 97 75.3
Sabra04G0150100 Salix brachista HOM05D002560 ORTHO05D003782 1.2e-34 150.6 97 73.2
DCAR_023988 Daucus carota HOM05D002560 ORTHO05D003782 3.6e-34 149.1 98 74.5
Sopen10g027890 Solanum pennellii HOM05D002560 ORTHO05D013637 4.7e-34 148.7 97 74.2
Thhalv10012449m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 6.2e-34 148.3 97 75.3
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 8.1e-34 147.9 98 74.5
Nitab4.5_0000047g0010 Nicotiana tabacum HOM05D002560 ORTHO05D003782 1.1e-33 147.5 85 85.9
SGA_v2.0_scaffold85G26659 Striga asiatica HOM05D002560 ORTHO05D003782 5.2e-33 145.2 98 72.4
vmacro08922 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 6.8e-33 144.8 149 53.7
CSS0041781 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 2.0e-32 143.3 103 69.9
Peaxi162Scf00595g00112 Petunia axillaris HOM05D002560 ORTHO05D003782 2.0e-32 143.3 134 56.7
Rhsim05G0228200 Rhododendron simsii HOM05D002560 ORTHO05D003782 4.4e-32 142.1 143 56.6
Zm00001eb195140 Zea mays HOM05D002560 ORTHO05D003782 5.8e-32 141.7 118 66.1
Zm00001eb093980 Zea mays HOM05D002560 ORTHO05D003782 9.8e-32 141.0 99 70.7
CARHR212130 Cardamine hirsuta HOM05D002560 ORTHO05D003782 1.1e-30 137.5 97 70.1
Hma1.2p1_0174F.1_g077050 Hydrangea macrophylla HOM05D002560 ORTHO05D003782 1.7e-28 130.2 92 65.2
Lj2C63G17 Lonicera japonica HOM05D002560 ORTHO05D003782 3.3e-27 125.9 94 63.8
MELO3C028507.2 Cucumis melo HOM05D002560 ORTHO05D013637 4.3e-27 125.6 78 83.3
Mapoly0002s0262 Marchantia polymorpha HOM05D002560 ORTHO05D003782 5.6e-27 125.2 97 60.8
CSS0033860 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 6.2e-26 121.7 90 65.6
Pp3c25_7220 Physcomitrium patens HOM05D002560 ORTHO05D003782 1.4e-25 120.6 97 57.7
RcHm_v2.0_Chr3g0492271 Rosa chinensis HOM05D002560 ORTHO05D013637 3.8e-23 112.5 72 80.6
Pp3c15_3360 Physcomitrium patens HOM05D002560 ORTHO05D003782 6.4e-23 111.7 95 56.8
Pp3c9_4770 Physcomitrium patens HOM05D002560 ORTHO05D003782 1.4e-22 110.5 97 54.6
unitig_27.g24878 Utricularia gibba HOM05D002560 ORTHO05D003782 3.2e-22 109.4 74 75.7
ATR0681G092 Amborella trichopoda HOM05D002560 ORTHO05D013637 4.6e-21 105.5 70 74.3
AagrBONN_evm.TU.Sc2ySwM_228.3097 Anthoceros agrestis HOM05D002560 ORTHO05D003782 4.3e-19 99.0 83 56.6
Pp3c17_3950 Physcomitrium patens HOM05D002560 ORTHO05D003782 5.6e-19 98.6 97 49.5
SMO334G0080 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 8.1e-18 94.7 98 51.0
GSVIVG01030231001 Vitis vinifera HOM05D002560 ORTHO05D013637 8.1e-18 94.7 98 52.0
SMO116G0458 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 8.9e-17 91.3 87 54.0
PRCOL_00002325 Prasinoderma coloniale HOM05D002560 ORTHO05D003782 3.5e-13 79.3 93 48.4
Carub.0006s0006 Capsella rubella HOM05D002560 ORTHO05D013637 1.7e-12 77.0 100 43.0
CBR_g54859 Chara braunii HOM05D000019 ORTHO05D000353 2.3e-12 76.6 107 43.0
MCO07G246 Micromonas commoda HOM05D002560 ORTHO05D003782 6.2e-10 68.6 92 39.1
GSVIVG01018311001 Vitis vinifera HOM05D002560 ORTHO05D013637 5.3e-09 65.5 51 62.7
arahy.Tifrunner.gnm1.ann1.93DW2D Arachis hypogaea HOM05D004261 ORTHO05D021484 5.8e-08 62.0 29 96.6


User provided reference genes

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