Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 0.0e+00 1997.6 1004 100.0
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1545.0 1008 76.8
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1526.9 1010 75.5
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 0.0e+00 1519.6 1012 75.7
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 0.0e+00 1514.6 1010 74.8
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 0.0e+00 1501.9 1018 74.5
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 0.0e+00 1500.0 1018 74.8
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 0.0e+00 1488.4 1010 74.1
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 0.0e+00 1481.5 1012 74.0
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 0.0e+00 1279.6 1021 63.8
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1271.9 1016 62.6
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1266.5 1031 62.9
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 0.0e+00 1265.4 1013 62.9
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 0.0e+00 1260.7 1020 63.5
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1260.4 1016 62.2
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1256.5 1016 62.1
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 0.0e+00 1251.9 1016 61.8
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1250.0 1016 61.6
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1248.0 1016 61.6
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1242.3 1016 61.4
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1242.3 1016 61.5
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 0.0e+00 1240.3 1015 62.4
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 0.0e+00 1239.6 996 62.8
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 0.0e+00 1237.2 1022 63.4
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 0.0e+00 1230.3 1027 62.0
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1226.8 1031 60.7
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 0.0e+00 1226.1 1017 62.6
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 0.0e+00 1225.7 1037 62.2
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 0.0e+00 1214.1 1023 61.2
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 0.0e+00 1208.7 1017 61.2
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 0.0e+00 1201.4 1016 60.7
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 0.0e+00 1196.0 1015 60.5
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 0.0e+00 1187.6 1018 60.6
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 0.0e+00 1186.4 1020 60.4
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 0.0e+00 1184.5 1031 60.1
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 0.0e+00 1183.3 1023 60.4
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 0.0e+00 1180.6 1022 60.6
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 0.0e+00 1180.6 1027 60.0
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 0.0e+00 1179.1 1016 60.2
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1177.9 1018 59.9
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1177.2 1018 59.9
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 0.0e+00 1170.2 1022 59.4
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1168.7 1024 58.5
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 0.0e+00 1160.6 1033 58.3
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 0.0e+00 1159.1 1030 58.4
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1158.3 1032 58.2
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1155.6 1034 58.4
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 0.0e+00 1151.7 1034 57.7
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 0.0e+00 1151.0 1014 58.4
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 0.0e+00 1148.3 1021 58.8
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 0.0e+00 1135.6 1009 58.9
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 0.0e+00 1134.4 792 72.2
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 0.0e+00 1123.2 1019 56.9
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 0.0e+00 1122.8 1026 56.4
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1114.4 1001 56.3
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1109.0 1001 56.0
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 0.0e+00 1105.9 1003 56.7
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 0.0e+00 1105.5 1003 56.7
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 0.0e+00 1102.4 1023 55.6
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 0.0e+00 1102.0 1006 56.4
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 0.0e+00 1098.6 1022 55.5
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 0.0e+00 1075.1 1022 54.3
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 8.9e-310 1067.0 1011 55.2
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 2.0e-309 1065.8 1025 54.4
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 1.1e-307 1060.1 1026 53.8
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 3.2e-307 1058.5 1014 55.8
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 1.3e-305 1053.1 1026 53.7
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 1.7e-305 1052.7 1025 53.6
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 1.7e-305 1052.7 996 56.2
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 2.5e-304 1048.9 1032 55.2
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 2.8e-303 1045.4 1028 54.7
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 3.6e-303 1045.0 996 53.7
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 1.8e-302 1042.7 1026 53.3
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 4.0e-302 1041.6 1023 53.4
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 6.8e-302 1040.8 1021 53.2
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 1.2e-301 1040.0 1034 54.6
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 7.8e-298 1027.3 1002 54.4
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 3.3e-296 1021.9 1013 52.9
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 4.3e-296 1021.5 1021 53.9
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 9.5e-296 1020.4 1023 52.4
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 4.7e-295 1018.1 1018 52.4
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 1.1e-294 1016.9 1022 52.3
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 8.9e-294 1013.8 1067 51.5
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 3.4e-293 1011.9 1019 52.8
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 2.2e-292 1009.2 1021 52.1
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 2.4e-291 1005.7 1021 52.0
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 2.1e-290 1002.7 1015 52.4
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 5.1e-281 971.5 991 51.3
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 1.5e-272 943.3 1026 50.1
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 2.4e-259 899.4 1041 48.3
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 1.5e-256 890.2 555 79.8
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 3.9e-249 865.5 1012 48.0
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 3.1e-246 855.9 640 67.3
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 1.2e-245 854.0 762 56.0
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 5.3e-238 828.6 654 64.4
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 1.3e-231 807.4 1006 44.9
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 2.7e-218 763.1 642 60.6
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 3.7e-215 752.7 1022 43.6
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 5.7e-208 728.8 642 58.4
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 1.8e-201 707.2 640 57.2
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 7.0e-198 695.3 560 63.0
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 5.6e-195 685.6 1101 38.1
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 8.0e-194 681.8 1058 38.8
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 7.0e-182 642.1 1125 37.6
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 3.0e-172 610.1 493 62.7
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 4.4e-168 596.3 710 45.9
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 3.8e-167 593.2 653 48.2
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 7.1e-150 535.8 463 60.7
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 4.8e-130 469.9 372 64.2
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 1.5e-128 464.9 402 59.0
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 5.5e-118 429.9 376 59.8
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 2.4e-73 281.6 1491 23.7
HPP92_012845 Vanilla planifolia HOM05D004911 ORTHO05D005930 7.3e-70 270.0 278 52.9
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 3.1e-68 264.6 548 32.3
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 9.8e-67 259.6 402 37.3
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 2.2e-66 258.5 422 37.4
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 2.5e-62 245.0 555 31.7
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 3.4e-59 234.6 484 33.1
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 1.3e-58 232.6 375 41.3
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-52 213.0 555 29.2
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 6.6e-39 167.2 673 25.4
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 6.6e-39 167.2 673 25.4
SHI39007 Sapria himalayana HOM05D004911 ORTHO05D005930 8.7e-39 166.8 371 33.7
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 4.3e-38 164.5 202 47.0
SHI39005 Sapria himalayana HOM05D004911 ORTHO05D005930 9.6e-38 163.3 168 48.8
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 4.5e-35 154.5 452 28.5
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 1.9e-33 149.1 204 44.6
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 1.8e-31 142.5 165 45.5
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 3.9e-31 141.4 150 51.3
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-30 139.8 148 50.7
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 5.6e-30 137.5 105 63.8
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 2.1e-29 135.6 210 40.0
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-22 113.2 94 56.4
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 7.4e-22 110.5 120 48.3
SHI45052 Sapria himalayana HOM05D004911 ORTHO05D005930 2.7e-16 92.0 152 34.9
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 6.0e-16 90.9 53 77.4
SHI45396 Sapria himalayana HOM05D004911 ORTHO05D005930 6.0e-16 90.9 208 30.8
SHI45717 Sapria himalayana HOM05D004911 ORTHO05D005930 6.0e-16 90.9 208 30.8
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 4.3e-14 84.7 58 62.1
SHI45051 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-12 80.1 51 72.5
SHI52879 Sapria himalayana HOM05D004911 ORTHO05D005930 6.1e-08 64.3 148 33.8
SMO343G0003 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 8.8e-07 60.5 83 36.1


User provided reference genes

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