Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 5.4e-248 860.5 432 100.0
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 2.5e-245 851.7 432 98.8
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 3.1e-158 562.4 367 77.9
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 4.6e-154 548.5 432 67.1
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 1.7e-153 546.6 437 67.5
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 1.6e-151 540.0 430 66.7
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 6.2e-151 538.1 428 68.0
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 1.5e-149 533.5 439 64.9
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 2.6e-149 532.7 422 67.8
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 5.8e-149 531.6 437 65.4
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 6.4e-148 528.1 430 65.6
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 1.4e-147 526.9 434 65.4
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.6e-146 523.5 417 65.2
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 2.1e-146 523.1 423 64.5
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 1.7e-145 520.0 428 65.7
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 8.6e-145 517.7 442 63.6
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 2.5e-144 516.2 429 66.0
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.2e-143 513.8 419 64.2
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.6e-143 513.5 419 64.2
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 6.2e-143 511.5 429 62.9
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 1.1e-142 510.8 419 64.7
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 6.8e-142 508.1 427 64.4
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 4.4e-141 505.4 425 62.4
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 4.4e-141 505.4 430 62.8
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 5.8e-141 505.0 422 62.6
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 7.5e-141 504.6 373 68.4
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 9.9e-141 504.2 432 61.8
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 1.3e-140 503.8 432 62.0
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 1.9e-139 500.0 405 65.2
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 2.4e-139 499.6 353 72.8
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 4.1e-139 498.8 407 63.1
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 7.1e-139 498.0 399 64.4
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 7.1e-139 498.0 437 61.6
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 9.2e-139 497.7 428 62.4
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 1.6e-138 496.9 437 61.3
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 1.6e-138 496.9 425 60.9
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 2.7e-138 496.1 423 63.1
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 3.5e-138 495.7 352 71.3
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 4.6e-138 495.4 373 67.6
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 6.0e-138 495.0 355 71.8
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 7.8e-138 494.6 425 61.6
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 1.0e-137 494.2 422 61.6
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.3e-137 493.8 375 67.7
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.3e-137 493.8 427 63.5
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 2.3e-137 493.0 421 61.0
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 5.1e-137 491.9 426 62.4
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 6.6e-137 491.5 383 65.5
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 8.6e-137 491.1 434 61.1
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 1.1e-136 490.7 440 60.9
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 3.3e-136 489.2 404 63.6
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 4.3e-136 488.8 392 64.3
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 4.3e-136 488.8 434 60.6
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 5.6e-136 488.4 370 66.5
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 2.1e-135 486.5 403 62.5
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 6.2e-135 485.0 379 64.6
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 1.8e-134 483.4 409 61.9
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 4.4e-133 478.8 417 60.4
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 7.6e-133 478.0 434 60.8
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 1.7e-132 476.9 429 57.6
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.7e-132 476.9 403 61.8
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.7e-132 476.9 403 61.8
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 1.7e-132 476.9 427 59.3
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 2.2e-132 476.5 419 61.3
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.8e-132 475.7 403 61.0
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 1.1e-131 474.2 403 60.8
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.4e-131 473.8 403 61.3
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.1e-130 469.9 403 60.5
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.7e-130 469.5 386 61.9
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 3.5e-130 469.2 382 62.8
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 3.5e-130 469.2 446 56.1
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 1.3e-129 467.2 385 63.1
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 3.9e-129 465.7 351 67.2
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 6.6e-129 464.9 417 59.0
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 8.7e-129 464.5 379 62.0
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 1.1e-128 464.2 428 56.8
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 1.1e-128 464.2 405 60.7
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 1.9e-128 463.4 371 62.3
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 1.9e-128 463.4 371 62.3
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 4.3e-128 462.2 371 62.3
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 4.3e-128 462.2 429 60.8
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 7.3e-128 461.5 404 59.9
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.3e-127 460.7 377 62.3
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.6e-127 460.3 363 63.6
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 1.6e-127 460.3 419 59.4
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 2.8e-127 459.5 389 61.4
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 6.2e-127 458.4 377 61.5
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 8.1e-127 458.0 424 57.8
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 8.1e-127 458.0 377 62.1
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 1.8e-126 456.8 385 61.6
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 3.1e-126 456.1 433 56.8
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 3.1e-126 456.1 431 56.4
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 4.0e-126 455.7 374 62.6
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 5.3e-126 455.3 385 61.3
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 6.9e-126 454.9 430 56.7
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 6.9e-126 454.9 434 58.1
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 1.2e-125 454.1 430 56.5
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.5e-125 453.8 426 56.8
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 3.4e-125 452.6 415 57.1
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 3.4e-125 452.6 375 62.4
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 9.9e-125 451.1 426 57.3
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 1.3e-124 450.7 431 56.1
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 3.8e-124 449.1 434 56.5
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 4.9e-124 448.7 402 59.0
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 2.7e-122 443.0 374 60.2
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 3.5e-122 442.6 371 61.7
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 6.0e-122 441.8 403 58.1
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 6.0e-122 441.8 354 64.7
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 1.6e-119 433.7 409 57.2
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 1.5e-117 427.2 420 54.3
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 9.9e-117 424.5 393 58.3
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 2.9e-116 422.9 322 67.1
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 9.6e-112 407.9 337 62.0
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 1.8e-110 403.7 322 62.7
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 3.1e-110 402.9 377 56.2
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 5.1e-105 385.6 340 57.1
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.9e-104 383.6 345 55.9
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.5e-101 374.0 313 62.9
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.4e-101 372.9 344 54.9
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.9e-99 367.1 342 53.2
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 2.1e-98 363.6 340 53.5
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 1.6e-95 354.0 416 50.5
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 7.2e-91 338.6 426 47.9
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 2.5e-88 330.1 326 50.9
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 3.2e-83 313.2 446 43.3
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.4e-81 307.8 288 58.3
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.7e-76 290.8 244 60.2
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 2.2e-71 273.9 353 45.9
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 9.1e-70 268.5 355 40.6
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.6e-69 266.9 342 42.7
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-67 261.2 344 43.0
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 7.2e-67 258.8 328 43.3
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.1e-66 257.3 303 44.6
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.0e-60 238.4 333 39.6
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.2e-60 237.3 299 42.5
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.2e-60 237.3 294 42.5
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 1.5e-59 234.6 262 50.0
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.5e-59 234.6 200 58.0
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 2.5e-59 233.8 351 37.0
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.1e-58 230.7 305 38.7
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.6e-58 229.9 200 62.0
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.0e-57 226.5 302 40.1
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 7.7e-53 212.2 155 72.3
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.3e-52 211.5 185 61.1
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.1e-50 204.1 292 38.0
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 3.0e-49 200.3 374 35.3
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 4.9e-47 193.0 200 55.0
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 5.0e-44 183.0 164 50.6
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 5.0e-44 183.0 159 60.4
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 9.8e-40 168.7 305 34.8
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.2e-39 167.5 146 61.0
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 2.9e-39 167.2 218 42.2
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.4e-38 164.1 333 33.3
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.2e-38 163.7 321 31.5
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.1e-38 163.3 315 34.0
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.6e-37 159.8 135 65.2
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 7.8e-37 159.1 315 33.0
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.0e-36 158.7 315 33.3
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.2e-29 135.2 324 29.3
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.1e-29 134.4 298 32.9
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.6e-29 133.3 320 28.1
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 8.1e-26 122.5 309 29.4
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.2e-25 119.8 86 60.5
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 6.8e-25 119.4 130 47.7
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 1.5e-24 118.2 80 73.8
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 5.8e-24 116.3 76 69.7
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.7e-23 114.8 327 30.3
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 8.4e-23 112.5 307 31.3
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.4e-22 110.9 197 33.0
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 5.4e-22 109.8 78 71.8
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 9.2e-22 109.0 230 28.7
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 7.8e-21 105.9 326 27.9
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.3e-19 100.1 324 28.7
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 2.8e-18 97.4 351 26.5
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.1e-17 95.5 319 27.6
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 1.1e-14 85.5 310 26.1
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 1.4e-09 68.6 61 59.0
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.4e-08 63.9 139 31.7
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.8e-07 60.5 132 36.4
PRCOL_00005847 Prasinoderma coloniale HOM05D047694 ORTHO05D049123 1.1e-06 58.9 262 22.9


User provided reference genes

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