Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Q5T5LU Arachis hypogaea HOM05D004446 ORTHO05D005346 8.7e-78 293.5 142 100.0
arahy.Tifrunner.gnm1.ann1.VC13RQ Arachis hypogaea HOM05D004446 ORTHO05D005346 1.9e-77 292.4 142 99.3
Glyma.20G079400 Glycine max HOM05D004446 ORTHO05D005346 2.9e-73 278.5 142 92.3
Phvul.007G238600 Phaseolus vulgaris HOM05D004446 ORTHO05D005346 3.8e-73 278.1 142 91.5
Medtr1g046380 Medicago truncatula HOM05D004446 ORTHO05D005346 8.4e-73 276.9 142 92.3
Psat6g109720 Pisum sativum HOM05D004446 ORTHO05D005346 8.4e-73 276.9 142 92.3
Lj6g0002383 Lotus japonicus HOM05D004446 ORTHO05D005346 1.1e-72 276.6 142 91.5
VMungo0720G0669 Vigna mungo HOM05D004446 ORTHO05D005346 1.1e-72 276.6 142 90.8
COL.COLO4_05729 Corchorus olitorius HOM05D004446 ORTHO05D005346 1.4e-72 276.2 142 91.5
RcHm_v2.0_Chr4g0396561 Rosa chinensis HOM05D004446 ORTHO05D005346 1.4e-72 276.2 142 92.3
MD13G1228700 Malus domestica HOM05D004446 ORTHO05D005346 1.9e-72 275.8 142 90.8
Glyma.10G128100 Glycine max HOM05D004446 ORTHO05D005346 5.5e-72 274.2 142 90.8
TPR.G23640 Trifolium pratense HOM05D004446 ORTHO05D005346 7.1e-72 273.9 142 90.1
Cpa.g.sc59.66 Carica papaya HOM05D004446 ORTHO05D005346 9.3e-72 273.5 142 90.8
MSTRG.24643 Avicennia marina HOM05D004446 ORTHO05D005346 1.2e-71 273.1 142 90.1
PGR044G1212 Punica granatum HOM05D004446 ORTHO05D005346 1.2e-71 273.1 142 90.8
Ciclev10006172m.g Citrus clementina HOM05D004446 ORTHO05D005346 1.6e-71 272.7 142 90.8
FvH4_4g05410 Fragaria vesca HOM05D004446 ORTHO05D005346 1.6e-71 272.7 142 90.8
FAN07G2016 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.6e-71 272.7 142 90.8
FAN12G2493 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.6e-71 272.7 142 90.8
FAN12G4338 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.6e-71 272.7 142 90.8
MD16G1234000 Malus domestica HOM05D004446 ORTHO05D005346 1.6e-71 272.7 142 89.4
Lalb_Chr01g0011251 Lupinus albus HOM05D004446 ORTHO05D005346 2.1e-71 272.3 142 88.7
CiPaw.02G127900 Carya illinoinensis HOM05D004446 ORTHO05D005346 2.7e-71 271.9 142 88.7
Sed0017441 Sechium edule HOM05D004446 ORTHO05D005346 3.5e-71 271.6 142 88.0
Thecc.04G215500 Theobroma cacao HOM05D004446 ORTHO05D005346 3.5e-71 271.6 142 90.1
Atru.chr4.1819 Acer truncatum HOM05D004446 ORTHO05D005346 4.6e-71 271.2 142 88.7
Eucgr.H02865 Eucalyptus grandis HOM05D004446 ORTHO05D005346 4.6e-71 271.2 142 90.1
ClCG06G007390 Citrullus lanatus HOM05D004446 ORTHO05D005346 6.0e-71 270.8 142 89.4
CsaV3_2G012290 Cucumis sativus L. HOM05D004446 ORTHO05D005346 6.0e-71 270.8 142 89.4
Gohir.D10G146200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 7.9e-71 270.4 142 88.7
Manes.03G155100 Manihot esculenta HOM05D004446 ORTHO05D005346 7.9e-71 270.4 142 88.7
Gohir.A10G120100 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.0e-70 270.0 142 89.4
Gohir.D10G146300 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.0e-70 270.0 142 89.4
Gorai.011G163400 Gossypium raimondii HOM05D004446 ORTHO05D005346 1.0e-70 270.0 142 89.4
Lalb_Chr03g0036811 Lupinus albus HOM05D004446 ORTHO05D005346 1.0e-70 270.0 142 88.0
Manes.15G048500 Manihot esculenta HOM05D004446 ORTHO05D005346 1.0e-70 270.0 142 89.4
Potri.003G173800 Populus trichocarpa HOM05D004446 ORTHO05D005346 1.3e-70 269.6 142 88.0
CiPaw.01G206200 Carya illinoinensis HOM05D004446 ORTHO05D005346 1.8e-70 269.2 142 88.7
Gorai.011G163300 Gossypium raimondii HOM05D004446 ORTHO05D005346 2.3e-70 268.9 142 88.0
Potri.001G054500 Populus trichocarpa HOM05D004446 ORTHO05D005346 2.3e-70 268.9 142 88.7
MELO3C023063.2 Cucumis melo HOM05D004446 ORTHO05D005346 3.0e-70 268.5 142 88.7
Gohir.A10G120200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 5.1e-70 267.7 142 87.3
Prupe.1G056200 Prunus persica HOM05D004446 ORTHO05D005346 5.1e-70 267.7 142 88.0
CANSAT78G0709 Cannabis sativa HOM05D004446 ORTHO05D005346 8.7e-70 266.9 142 88.0
Duzib212G0284 Durio zibethinus HOM05D004446 ORTHO05D005346 8.7e-70 266.9 142 88.0
Aqoxy3G02680 Aquilegia oxysepala HOM05D004446 ORTHO05D005346 1.1e-69 266.5 142 88.7
vmacro00521 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 1.9e-69 265.8 142 87.3
HanXRQChr06g0183261 Helianthus annuus HOM05D004446 ORTHO05D005346 2.5e-69 265.4 142 86.6
SGA_v2.0_scaffold155G37240 Striga asiatica HOM05D004446 ORTHO05D005346 2.5e-69 265.4 142 88.7
CSS0043422 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 3.3e-69 265.0 142 86.6
CSS0044163 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 3.3e-69 265.0 142 86.6
Ca_11789_v3 Cicer arietinum L. HOM05D004446 ORTHO05D005346 4.3e-69 264.6 142 86.6
Lsat_1_v5_gn_2_41880 Lactuca sativa HOM05D004446 ORTHO05D005346 9.6e-69 263.5 142 85.9
DCAR_027363 Daucus carota HOM05D004446 ORTHO05D005346 1.3e-68 263.1 142 85.9
TWI73G1246 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 1.3e-68 263.1 142 87.3
AL4G28840 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 2.8e-68 261.9 142 85.9
AT2G33220 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 2.8e-68 261.9 142 85.9
BcaB03g13480 Brassica carinata HOM05D004446 ORTHO05D005346 2.8e-68 261.9 142 85.9
Actinidia35938 Actinidia chinensis HOM05D004446 ORTHO05D005346 3.7e-68 261.5 142 83.8
ECA238G1521 Erigeron canadensis HOM05D004446 ORTHO05D005346 3.7e-68 261.5 142 85.2
TAR362G0142 Trochodendron aralioides HOM05D004446 ORTHO05D005346 3.7e-68 261.5 142 86.6
Aa31LG5G4110 Aethionema arabicum HOM05D004446 ORTHO05D005346 4.8e-68 261.2 142 85.9
SalBow2G1310 Salvia bowleyana HOM05D004446 ORTHO05D005346 4.8e-68 261.2 142 85.2
BcaC07g36901 Brassica carinata HOM05D004446 ORTHO05D005346 6.2e-68 260.8 142 85.2
A08p36850 Brassica napus HOM05D004446 ORTHO05D005346 6.2e-68 260.8 142 85.2
A09p67770 Brassica napus HOM05D004446 ORTHO05D005346 6.2e-68 260.8 142 85.2
A10p03060 Brassica napus HOM05D004446 ORTHO05D005346 6.2e-68 260.8 142 85.2
C05p02820 Brassica napus HOM05D004446 ORTHO05D005346 6.2e-68 260.8 142 85.2
BolC5t29065H Brassica oleracea HOM05D004446 ORTHO05D005346 6.2e-68 260.8 142 85.2
BolC8t46930H Brassica oleracea HOM05D004446 ORTHO05D005346 6.2e-68 260.8 142 85.2
BraA08t35586Z Brassica rapa HOM05D004446 ORTHO05D005346 6.2e-68 260.8 142 85.2
BraA09t42108Z Brassica rapa HOM05D004446 ORTHO05D005346 6.2e-68 260.8 142 85.2
BraA10t42579Z Brassica rapa HOM05D004446 ORTHO05D005346 6.2e-68 260.8 142 85.2
Thhalv10017386m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 6.2e-68 260.8 142 85.2
HanXRQChr14g0434271 Helianthus annuus HOM05D004446 ORTHO05D005346 6.2e-68 260.8 142 84.5
Sp1g03460 Schrenkiella parvula HOM05D004446 ORTHO05D005346 6.2e-68 260.8 142 85.2
CDE04G3627 Ceratophyllum demersum HOM05D004446 ORTHO05D005346 8.2e-68 260.4 142 85.9
Thhalv10009042m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 8.2e-68 260.4 142 85.2
Lsat_1_v5_gn_2_41141 Lactuca sativa HOM05D004446 ORTHO05D005346 8.2e-68 260.4 141 85.1
Peaxi162Scf00047g01619 Petunia axillaris HOM05D004446 ORTHO05D005346 8.2e-68 260.4 142 86.6
TAR633G2153 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.1e-67 260.0 142 85.9
Nitab4.5_0000451g0180 Nicotiana tabacum HOM05D004446 ORTHO05D005346 1.4e-67 259.6 142 85.9
Nitab4.5_0018759g0010 Nicotiana tabacum HOM05D004446 ORTHO05D005346 1.4e-67 259.6 142 85.9
THA.LOC104816014 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 1.4e-67 259.6 142 86.6
TWI09G0335 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 1.4e-67 259.6 142 85.9
Aa31LG1G20240 Aethionema arabicum HOM05D004446 ORTHO05D005346 1.8e-67 259.2 142 85.2
C08p01220 Brassica napus HOM05D004446 ORTHO05D005346 1.8e-67 259.2 142 85.2
CARHR127230 Cardamine hirsuta HOM05D004446 ORTHO05D005346 1.8e-67 259.2 142 84.5
Solyc09g091170.4 Solanum lycopersicum HOM05D004446 ORTHO05D005346 1.8e-67 259.2 142 85.9
Sopen09g034140 Solanum pennellii HOM05D004446 ORTHO05D005346 1.8e-67 259.2 142 85.9
AT1G04630 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 2.4e-67 258.8 142 84.5
Carub.0001s0386 Capsella rubella HOM05D004446 ORTHO05D005346 2.4e-67 258.8 142 84.5
Carub.0004s1468 Capsella rubella HOM05D004446 ORTHO05D005346 2.4e-67 258.8 142 85.2
AL1G14310 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 3.1e-67 258.5 142 84.5
Nn2g14612 Nelumbo nucifera HOM05D004446 ORTHO05D005346 3.1e-67 258.5 142 84.5
Sp4g15520 Schrenkiella parvula HOM05D004446 ORTHO05D005346 4.0e-67 258.1 142 83.8
Cc00_g09360 Coffea canephora HOM05D004446 ORTHO05D005346 5.3e-67 257.7 142 84.5
Nn5g27558 Nelumbo nucifera HOM05D004446 ORTHO05D005346 5.3e-67 257.7 142 83.8
CARHR003980 Cardamine hirsuta HOM05D004446 ORTHO05D005346 6.9e-67 257.3 142 83.8
THA.LOC104826105 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 6.9e-67 257.3 142 85.9
TAR365G0553 Trochodendron aralioides HOM05D004446 ORTHO05D005346 9.0e-67 256.9 142 85.2
Rhsim09G0047000 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.5e-66 256.1 149 81.2
RhsimUnG0181300 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.5e-66 256.1 149 81.2
PGSC0003DMG400011587 Solanum tuberosum HOM05D004446 ORTHO05D005346 1.5e-66 256.1 142 85.2
HPP92_008960 Vanilla planifolia HOM05D004446 ORTHO05D005346 1.5e-66 256.1 142 82.4
Hund19262 Selenicereus undatus HOM05D004446 ORTHO05D005346 2.6e-66 255.4 142 81.7
PSO782G0825 Papaver somniferum HOM05D004446 ORTHO05D005346 1.0e-65 253.4 142 83.1
ATR0736G077 Amborella trichopoda HOM05D004446 ORTHO05D005346 3.8e-65 251.5 142 81.7
AUR62035332 Chenopodium quinoa HOM05D004446 ORTHO05D005346 4.9e-65 251.1 142 81.7
PSO063G0015 Papaver somniferum HOM05D004446 ORTHO05D005346 8.4e-65 250.4 142 82.4
vmacro22557 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 1.1e-64 250.0 152 79.6
Sc19g0005800 Simmondsia chinensis HOM05D004446 ORTHO05D005346 1.4e-64 249.6 142 81.0
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 5.5e-64 247.7 135 85.2
EL10Ac3g06748 Beta vulgaris HOM05D004446 ORTHO05D005346 7.1e-64 247.3 142 80.3
Zm00001eb008370 Zea mays HOM05D004446 ORTHO05D005346 7.1e-64 247.3 142 79.6
QL06p022604 Quercus lobata HOM05D004446 ORTHO05D005346 9.3e-64 246.9 142 80.3
Migut.G00605 Erythranthe guttata HOM05D004446 ORTHO05D005346 4.6e-63 244.6 142 83.1
Hma1.2p1_2329F.1_g320020 Hydrangea macrophylla HOM05D004446 ORTHO05D005346 4.6e-63 244.6 173 69.4
Zm00001eb401250 Zea mays HOM05D004446 ORTHO05D005346 2.3e-62 242.3 142 78.2
Os03g0192400 Oryza sativa ssp. japonica HOM05D004446 ORTHO05D005346 1.9e-61 239.2 139 79.9
AUR62035909 Chenopodium quinoa HOM05D004446 ORTHO05D005346 5.7e-61 237.7 135 81.5
BcaC07g42166 Brassica carinata HOM05D004446 ORTHO05D005346 7.2e-56 220.7 142 76.1
Sabra03G0127300 Salix brachista HOM05D004446 ORTHO05D005346 7.2e-56 220.7 258 48.4
SEGI_11387 Sequoiadendron giganteum HOM05D004446 ORTHO05D005346 4.6e-55 218.0 142 69.0
Actinidia25089 Actinidia chinensis HOM05D004446 ORTHO05D005346 6.7e-54 214.2 175 61.7
Sabra01G0039000 Salix brachista HOM05D004446 ORTHO05D005346 2.4e-51 205.7 306 42.2
BolC3t14561H Brassica oleracea HOM05D004446 ORTHO05D005346 9.1e-51 203.8 138 73.9
Ah.13g075110 Amaranthus hybridus HOM05D004446 ORTHO05D005346 1.0e-49 200.3 142 68.3
BolC8t52743H Brassica oleracea HOM05D004446 ORTHO05D005346 2.9e-49 198.7 117 81.2
AagrBONN_evm.TU.Sc2ySwM_344.5082 Anthoceros agrestis HOM05D004446 ORTHO05D005346 2.1e-47 192.6 142 63.4
Pp3c5_4240 Physcomitrium patens HOM05D004446 ORTHO05D005346 2.7e-47 192.2 141 63.8
Pp3c16_2570 Physcomitrium patens HOM05D004446 ORTHO05D005346 2.3e-46 189.1 141 64.5
CBR_g9031 Chara braunii HOM05D004446 ORTHO05D005346 4.4e-45 184.9 138 64.5
unitig_748.g8289 Utricularia gibba HOM05D002765 ORTHO05D003083 9.7e-45 183.7 142 66.2
Mapoly0001s0090 Marchantia polymorpha HOM05D004446 ORTHO05D005346 4.8e-44 181.4 142 59.9
C08p52100 Brassica napus HOM05D004446 ORTHO05D005346 4.8e-36 154.8 91 79.1
Dinv27149 Davidia involucrata HOM05D004446 ORTHO05D005346 4.8e-36 154.8 82 86.6
GSVIVG01028486001 Vitis vinifera HOM05D004446 ORTHO05D005346 1.2e-34 150.2 82 85.4
MCO16G128 Micromonas commoda HOM05D004446 ORTHO05D005346 3.8e-33 145.2 142 49.3
Haze_11535 Corylus avellana HOM05D004446 ORTHO05D005346 2.1e-31 139.4 86 76.7
A03p18650 Brassica napus HOM05D004446 ORTHO05D005346 4.7e-31 138.3 71 88.7
BraA03t11124Z Brassica rapa HOM05D004446 ORTHO05D005346 4.7e-31 138.3 71 88.7
Oeu008823.1 Olea europaea HOM05D004446 ORTHO05D005346 6.7e-30 134.4 70 88.6
CAN.G1588.2 Capsicum annuum HOM05D004446 ORTHO05D005346 8.8e-30 134.0 73 84.9
RhsimUnG0181500 Rhododendron simsii HOM05D004446 ORTHO05D005346 2.0e-29 132.9 73 82.2
BcaC01g05851 Brassica carinata HOM05D004446 ORTHO05D005346 6.3e-28 127.9 66 87.9
Cre16.g664600 Chlamydomonas reinhardtii HOM05D004446 ORTHO05D005346 1.2e-26 123.6 141 46.1
SMO364G0175 Selaginella moellendorffii HOM05D004446 ORTHO05D005346 1.3e-25 120.2 136 47.8
Oeu008826.1 Olea europaea HOM05D004446 ORTHO05D005346 2.2e-25 119.4 64 85.9
MBI10_g44933_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 3.8e-25 118.6 63 84.1
Zm00001eb305890 Zea mays HOM05D004446 ORTHO05D005346 1.9e-24 116.3 70 71.4
MBI10_g35300_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 1.5e-21 106.7 154 45.5
Cc05_g03600 Coffea canephora HOM05D004446 ORTHO05D005346 7.0e-19 97.8 72 68.1
SHI08306 Sapria himalayana HOM05D004446 ORTHO05D005346 5.5e-16 88.2 63 63.5
C03p21790 Brassica napus HOM05D004446 ORTHO05D005346 2.3e-14 82.8 46 82.6
SHI22881 Sapria himalayana HOM05D004446 ORTHO05D005346 3.7e-12 75.5 54 66.7
PRCOL_00006069 Prasinoderma coloniale HOM05D004446 ORTHO05D005346 3.1e-11 72.4 99 38.4
CSS0009466 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.1e-07 59.7 30 83.3
unitig_32.g10861 Utricularia gibba HOM05D004446 ORTHO05D005346 6.1e-07 58.2 95 43.2


User provided reference genes

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