Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 3.3e-60 235.0 126 100.0
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 2.3e-45 185.7 95 97.9
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 2.4e-31 139.0 155 52.3
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 1.6e-30 136.3 155 51.6
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 1.0e-29 133.7 150 54.0
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 8.1e-27 124.0 95 65.3
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 1.8e-26 122.9 154 46.8
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 6.8e-26 120.9 150 48.7
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 4.4e-25 118.2 158 47.5
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 3.8e-24 115.2 142 47.9
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 8.7e-21 104.0 158 43.7
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 5.6e-20 101.3 157 45.2
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 7.3e-20 100.9 158 41.8
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 6.2e-19 97.8 151 43.0
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 2.4e-18 95.9 159 40.3
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 2.4e-18 95.9 147 44.2
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 2.2e-16 89.4 93 51.6
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.9e-16 89.0 158 42.4
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 3.8e-16 88.6 160 42.5
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 3.8e-16 88.6 158 43.7
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 1.9e-15 86.3 161 39.1
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 2.4e-15 85.9 158 39.9
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 3.2e-15 85.5 158 38.6
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 5.4e-15 84.7 157 39.5
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 5.4e-15 84.7 157 39.5
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 1.2e-14 83.6 151 41.1
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 2.7e-14 82.4 156 41.7
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 2.7e-14 82.4 165 39.4
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 2.7e-14 82.4 156 41.7
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 3.5e-14 82.0 158 38.0
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 3.5e-14 82.0 153 42.5
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 4.6e-14 81.6 157 38.2
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 1.0e-13 80.5 96 49.0
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.0e-13 80.5 157 38.9
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.3e-13 80.1 98 45.9
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 1.7e-13 79.7 97 47.4
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 6.6e-13 77.8 95 45.3
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 8.7e-13 77.4 95 45.3
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 8.7e-13 77.4 93 45.2
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.1e-12 77.0 158 39.2
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 1.1e-12 77.0 95 45.3
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.5e-12 76.6 155 40.0
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 1.5e-12 76.6 153 37.9
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 1.9e-12 76.3 155 41.9
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 2.5e-12 75.9 93 47.3
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 3.3e-12 75.5 103 44.7
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 5.6e-12 74.7 93 46.2
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 5.6e-12 74.7 159 39.0
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 7.4e-12 74.3 77 54.5
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 9.6e-12 73.9 145 37.2
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 9.6e-12 73.9 153 35.3
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 9.6e-12 73.9 124 40.3
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 9.6e-12 73.9 153 41.8
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.8e-11 71.6 149 41.6
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 4.8e-11 71.6 151 35.1
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 8.1e-11 70.9 154 38.3
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 1.1e-10 70.5 158 38.0
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 1.1e-10 70.5 152 36.8
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.4e-10 70.1 151 35.1
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.4e-10 70.1 93 45.2
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.4e-10 70.1 99 45.5
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 1.4e-10 70.1 147 37.4
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 1.4e-10 70.1 95 49.5
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 1.8e-10 69.7 94 44.7
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 1.8e-10 69.7 94 44.7
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 1.8e-10 69.7 94 41.5
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.1e-10 68.9 133 42.9
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 3.1e-10 68.9 92 45.7
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.1e-10 68.9 92 45.7
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.1e-10 68.9 92 45.7
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.1e-10 68.9 144 38.2
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 3.1e-10 68.9 98 45.9
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 3.1e-10 68.9 91 39.6
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.9e-10 67.8 156 39.1
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.9e-10 67.8 156 39.1
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 9.0e-10 67.4 95 42.1
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 9.0e-10 67.4 161 36.0
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-09 67.0 125 41.6
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 1.5e-09 66.6 149 37.6
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 2.0e-09 66.2 146 34.9
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.0e-09 66.2 143 35.0
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 2.0e-09 66.2 149 37.6
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 2.0e-09 66.2 149 37.6
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 2.0e-09 66.2 95 42.1
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 3.4e-09 65.5 145 35.9
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 4.5e-09 65.1 127 34.6
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 5.8e-09 64.7 154 35.1
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.8e-09 64.7 78 48.7
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 5.8e-09 64.7 149 36.9
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 7.6e-09 64.3 151 36.4
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 7.6e-09 64.3 93 40.9
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 7.6e-09 64.3 93 41.9
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 7.6e-09 64.3 153 35.3
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 7.6e-09 64.3 157 33.8
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.3e-08 63.5 120 42.5
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 1.3e-08 63.5 97 39.2
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 1.3e-08 63.5 148 34.5
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 1.7e-08 63.2 149 37.6
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.2e-08 62.8 163 31.9
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 2.2e-08 62.8 153 34.6
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 2.2e-08 62.8 146 38.4
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 2.9e-08 62.4 157 35.0
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 3.8e-08 62.0 157 35.7
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 6.4e-08 61.2 93 40.9
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 6.4e-08 61.2 98 39.8
QL06p009884 Quercus lobata HOM05D003565 ORTHO05D003943 6.4e-08 61.2 96 36.5
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 8.4e-08 60.8 106 37.7
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 8.4e-08 60.8 94 38.3
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 8.4e-08 60.8 128 34.4
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.1e-07 60.5 79 45.6
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 1.1e-07 60.5 93 41.9
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.4e-07 60.1 79 45.6
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 1.4e-07 60.1 139 34.5
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 1.9e-07 59.7 149 36.2
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 2.4e-07 59.3 149 36.9
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 2.4e-07 59.3 149 36.9
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.2e-07 58.9 93 38.7
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.2e-07 58.9 108 43.5
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 7.1e-07 57.8 94 40.4
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 7.1e-07 57.8 149 36.9
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 9.3e-07 57.4 93 37.6
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.2e-06 57.0 142 33.8
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 1.2e-06 57.0 74 41.9
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 1.2e-06 57.0 142 33.1
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 2.7e-06 55.8 94 38.3
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 3.5e-06 55.5 78 42.3
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 3.5e-06 55.5 148 33.1
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 4.6e-06 55.1 78 42.3
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 6.0e-06 54.7 142 33.1
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 7.9e-06 54.3 95 34.7
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 7.9e-06 54.3 132 31.1


User provided reference genes

Program Settings