Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 2.0e-144 515.8 262 100.0
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 5.1e-140 501.1 262 98.5
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 4.6e-101 371.7 271 74.9
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 1.8e-100 369.8 262 76.7
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 2.3e-100 369.4 275 76.4
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 3.9e-100 368.6 279 74.2
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 8.7e-100 367.5 279 74.6
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 3.1e-97 359.0 278 72.7
TPR.G15411 Trifolium pratense HOM05D006396 ORTHO05D008172 1.0e-95 354.0 261 75.1
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 1.7e-95 353.2 279 71.0
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 3.8e-95 352.1 265 71.7
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 3.8e-95 352.1 263 74.1
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 8.5e-95 350.9 274 71.5
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 2.5e-94 349.4 263 74.9
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 5.5e-94 348.2 268 73.5
QL02p069325 Quercus lobata HOM05D006396 ORTHO05D008172 2.1e-93 346.3 269 71.7
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 7.9e-93 344.4 264 71.2
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 2.3e-92 342.8 272 70.6
Ca_08202_v3 Cicer arietinum L. HOM05D006396 ORTHO05D008172 3.0e-92 342.4 273 71.8
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 5.1e-92 341.7 268 71.6
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.1e-91 340.5 272 69.9
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 1.1e-91 340.5 272 69.9
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 1.5e-91 340.1 240 75.8
FAN14G4577 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.3e-90 337.0 241 74.7
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 1.3e-90 337.0 285 67.0
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.7e-90 336.7 272 69.1
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 2.2e-90 336.3 275 68.7
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 2.2e-90 336.3 205 84.9
FAN09G2227 Fragaria x ananassa HOM05D006396 ORTHO05D008172 3.7e-90 335.5 241 74.3
PGR142G1470 Punica granatum HOM05D006396 ORTHO05D008172 3.7e-90 335.5 268 69.8
GSVIVG01032980001 Vitis vinifera HOM05D006396 ORTHO05D008172 3.7e-90 335.5 263 71.1
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 6.3e-90 334.7 263 71.1
FAN05G4097 Fragaria x ananassa HOM05D006396 ORTHO05D008172 8.2e-90 334.3 241 73.9
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 1.1e-89 334.0 202 84.2
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 1.4e-89 333.6 235 77.0
SalBow1G8636 Salvia bowleyana HOM05D006396 ORTHO05D008172 1.4e-89 333.6 263 69.6
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 1.8e-89 333.2 202 83.7
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 3.1e-89 332.4 276 68.1
Rhsim08G0038900 Rhododendron simsii HOM05D006396 ORTHO05D008172 4.1e-89 332.0 278 65.8
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 4.1e-89 332.0 283 67.5
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 5.3e-89 331.6 283 67.1
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 6.9e-89 331.3 263 68.4
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 9.1e-89 330.9 247 73.3
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 1.5e-88 330.1 263 70.0
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 2.6e-88 329.3 264 68.9
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 2.6e-88 329.3 268 68.7
Lj7A617G76 Lonicera japonica HOM05D006396 ORTHO05D008172 4.5e-88 328.6 187 88.8
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 7.7e-88 327.8 265 69.1
Prupe.3G313700 Prunus persica HOM05D006396 ORTHO05D008172 7.7e-88 327.8 194 87.1
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 7.7e-88 327.8 205 81.0
MD09G1002500 Malus domestica HOM05D006396 ORTHO05D008172 1.0e-87 327.4 287 67.2
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 3.8e-87 325.5 267 68.9
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 3.8e-87 325.5 188 88.3
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 5.0e-87 325.1 217 78.8
Hund12907 Selenicereus undatus HOM05D006396 ORTHO05D008172 6.5e-87 324.7 265 67.2
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 1.1e-86 323.9 238 73.1
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 1.1e-86 323.9 209 78.5
DCAR_014466 Daucus carota HOM05D006396 ORTHO05D008172 1.4e-86 323.6 268 69.0
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 1.4e-86 323.6 277 65.7
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 4.2e-86 322.0 222 77.5
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 5.5e-86 321.6 191 85.9
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 7.2e-86 321.2 201 83.6
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 4.7e-85 318.5 201 82.6
Solyc02g005210.3 Solanum lycopersicum HOM05D006396 ORTHO05D008172 4.7e-85 318.5 203 82.8
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 7.9e-85 317.8 211 79.1
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 7.9e-85 317.8 205 81.0
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 7.9e-85 317.8 225 72.9
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 1.0e-84 317.4 250 69.6
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 1.0e-84 317.4 199 82.9
Nitab4.5_0000139g0180 Nicotiana tabacum HOM05D006396 ORTHO05D008172 1.0e-84 317.4 269 68.0
Sopen02g001100 Solanum pennellii HOM05D006396 ORTHO05D008172 1.4e-84 317.0 203 82.3
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 1.8e-84 316.6 197 84.8
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 1.8e-84 316.6 187 86.1
PGSC0003DMG400014532 Solanum tuberosum HOM05D006396 ORTHO05D008172 2.3e-84 316.2 204 82.4
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 3.0e-84 315.8 201 81.6
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 3.0e-84 315.8 201 81.6
Nitab4.5_0005452g0030 Nicotiana tabacum HOM05D006396 ORTHO05D008172 3.0e-84 315.8 212 80.2
CAN.G1108.4 Capsicum annuum HOM05D006396 ORTHO05D008172 3.9e-84 315.5 195 84.1
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 3.9e-84 315.5 199 82.9
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 3.9e-84 315.5 238 70.6
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 5.1e-84 315.1 197 82.2
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 5.1e-84 315.1 198 82.8
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 1.5e-83 313.5 199 82.9
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 2.0e-83 313.2 186 84.9
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 7.4e-83 311.2 198 81.3
CSS0007606 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 7.4e-83 311.2 202 82.2
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 1.7e-82 310.1 266 66.5
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 1.7e-82 310.1 285 64.6
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 2.2e-82 309.7 198 80.8
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 2.2e-82 309.7 186 86.6
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 2.8e-82 309.3 198 80.8
PSO017G3463 Papaver somniferum HOM05D006396 ORTHO05D008172 1.8e-81 306.6 272 65.4
PSO478G0237 Papaver somniferum HOM05D006396 ORTHO05D008172 1.8e-81 306.6 272 64.3
Cc07_g01330 Coffea canephora HOM05D006396 ORTHO05D008172 5.3e-81 305.1 263 65.0
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 2.9e-79 299.3 234 68.4
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 3.8e-79 298.9 190 77.9
HPP92_009800 Vanilla planifolia HOM05D006396 ORTHO05D008172 4.2e-78 295.4 192 78.6
CDE05G2379 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 5.5e-78 295.0 224 70.5
Migut.L00475 Erythranthe guttata HOM05D006396 ORTHO05D008172 6.3e-74 281.6 263 62.0
Mapoly0054s0013 Marchantia polymorpha HOM05D006396 ORTHO05D008172 4.1e-73 278.9 195 70.3
EL10Ac6g13409 Beta vulgaris HOM05D006396 ORTHO05D008172 1.1e-70 270.8 225 66.2
CSS0000498 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 4.2e-70 268.9 203 73.4
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 2.6e-67 259.6 162 84.6
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 9.7e-67 257.7 188 66.5
CBR_g29738 Chara braunii HOM05D006396 ORTHO05D008172 3.1e-65 252.7 192 64.1
Pp3c2_10260 Physcomitrium patens HOM05D006396 ORTHO05D008172 2.3e-60 236.5 197 60.4
FvH4_6g54310 Fragaria vesca HOM05D006396 ORTHO05D008172 5.7e-59 231.9 179 70.4
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 1.8e-57 226.9 140 83.6
Duzib147G0670 Durio zibethinus HOM05D006396 ORTHO05D008172 2.0e-56 223.4 272 53.7
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 2.6e-51 206.5 182 63.7
SGA_v2.0_scaffold174G39277 Striga asiatica HOM05D006396 ORTHO05D008172 1.0e-47 194.5 179 59.2
PRCOL_00002489 Prasinoderma coloniale HOM05D006396 ORTHO05D008172 2.5e-46 189.9 196 50.0
Peaxi162Scf00818g00123 Petunia axillaris HOM05D006396 ORTHO05D008172 5.6e-46 188.7 109 85.3
AagrBONN_evm.TU.Sc2ySwM_368.425 Anthoceros agrestis HOM05D006396 ORTHO05D008172 1.6e-45 187.2 149 67.1
MCO04G060 Micromonas commoda HOM05D006396 ORTHO05D008172 1.6e-45 187.2 185 50.8
SEGI_35956 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 2.7e-40 169.9 109 72.5
Cre16.g662150 Chlamydomonas reinhardtii HOM05D006396 ORTHO05D008172 1.5e-35 154.1 188 44.1
FAN02G1480 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.3e-31 141.0 127 62.2
SEGI_37491 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 2.1e-24 117.1 89 67.4
BolC2t09342H Brassica oleracea HOM05D006396 ORTHO05D000401 1.1e-17 94.7 109 55.0
MD04G1090800 Malus domestica HOM05D006396 ORTHO05D008172 3.9e-15 86.3 48 83.3
BolC1t02127H Brassica oleracea HOM05D000589 ORTHO05D000401 8.7e-15 85.1 93 57.0
A02p34690 Brassica napus HOM05D006396 ORTHO05D008172 2.4e-09 67.0 44 77.3
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 2.7e-08 63.5 65 56.9
Psat7g159680 Pisum sativum HOM05D006396 ORTHO05D008172 3.5e-08 63.2 44 63.6


User provided reference genes

Program Settings