Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PZHE2U Arachis hypogaea HOM05D004063 ORTHO05D005326 1.6e-42 175.6 84 100.0
arahy.Tifrunner.gnm1.ann1.ND9UIP Arachis hypogaea HOM05D004063 ORTHO05D013367 7.1e-19 97.1 105 56.2
arahy.Tifrunner.gnm1.ann1.SDYE8W Arachis hypogaea HOM05D004063 ORTHO05D013367 7.1e-19 97.1 105 56.2
arahy.Tifrunner.gnm1.ann1.RK3M4K Arachis hypogaea HOM05D004063 ORTHO05D001221 1.6e-18 95.9 105 55.2
arahy.Tifrunner.gnm1.ann1.G5WY8I Arachis hypogaea HOM05D001447 ORTHO05D005061 2.0e-13 79.0 115 47.8
arahy.Tifrunner.gnm1.ann1.T45K83 Arachis hypogaea HOM05D004063 ORTHO05D005326 2.0e-13 79.0 115 47.8
arahy.Tifrunner.gnm1.ann1.YJK3BU Arachis hypogaea HOM05D004063 ORTHO05D005326 2.0e-13 79.0 115 47.8
Glyma.07G204400 Glycine max HOM05D004063 ORTHO05D005326 3.4e-13 78.2 117 47.9
Glyma.13G171700 Glycine max HOM05D004063 ORTHO05D005326 3.4e-13 78.2 117 47.9
Lalb_Chr05g0218721 Lupinus albus HOM05D004063 ORTHO05D005326 3.4e-13 78.2 117 47.9
TPR.G34273 Trifolium pratense HOM05D004063 ORTHO05D005326 3.4e-13 78.2 117 47.9
arahy.Tifrunner.gnm1.ann1.T0MTDZ Arachis hypogaea HOM05D004063 ORTHO05D005326 4.4e-13 77.8 115 47.0
TPR.G16276 Trifolium pratense HOM05D004063 ORTHO05D005326 4.4e-13 77.8 117 47.9
COL.COLO4_05219 Corchorus olitorius HOM05D004063 ORTHO05D005326 7.6e-13 77.0 106 50.0
Ca_26048_v3 Cicer arietinum L. HOM05D004063 ORTHO05D005326 9.9e-13 76.6 117 47.0
Phvul.003G057700 Phaseolus vulgaris HOM05D004063 ORTHO05D005326 9.9e-13 76.6 117 47.0
Psat7g118640 Pisum sativum HOM05D004063 ORTHO05D005326 9.9e-13 76.6 117 46.2
MBI08_g37091_MAGBIO Magnolia biondii HOM05D004063 ORTHO05D005326 1.3e-12 76.3 105 47.6
Medtr4g087885 Medicago truncatula HOM05D004063 ORTHO05D005326 2.2e-12 75.5 117 46.2
Actinidia37921 Actinidia chinensis HOM05D004063 ORTHO05D005326 2.9e-12 75.1 117 45.3
Haze_22784 Corylus avellana HOM05D004063 ORTHO05D005326 3.8e-12 74.7 115 46.1
Medtr2g097220 Medicago truncatula HOM05D004063 ORTHO05D005326 3.8e-12 74.7 117 47.0
QL02p014238 Quercus lobata HOM05D004063 ORTHO05D005326 4.9e-12 74.3 118 44.9
Sp1g18280 Schrenkiella parvula HOM05D004063 ORTHO05D005326 4.9e-12 74.3 116 44.0
Duzib116G0298 Durio zibethinus HOM05D004063 ORTHO05D005326 6.4e-12 73.9 115 45.2
AL1G33510 Arabidopsis lyrata HOM05D004063 ORTHO05D005326 8.4e-12 73.6 115 44.3
BcaB07g32056 Brassica carinata HOM05D004063 ORTHO05D005326 8.4e-12 73.6 115 44.3
A07p15610 Brassica napus HOM05D004063 ORTHO05D005326 8.4e-12 73.6 115 44.3
C07p22960 Brassica napus HOM05D004063 ORTHO05D005326 8.4e-12 73.6 115 44.3
BolC5t30614H Brassica oleracea HOM05D004063 ORTHO05D005326 8.4e-12 73.6 115 44.3
BolC7t42835H Brassica oleracea HOM05D004063 ORTHO05D005326 8.4e-12 73.6 115 44.3
BraA07t29300Z Brassica rapa HOM05D004063 ORTHO05D005326 8.4e-12 73.6 115 44.3
ECA232G2837 Erigeron canadensis HOM05D004063 ORTHO05D005326 8.4e-12 73.6 117 45.3
Thhalv10008599m.g Eutrema salsugineum HOM05D004063 ORTHO05D005326 8.4e-12 73.6 115 44.3
CANSAT21G0854 Cannabis sativa HOM05D004063 ORTHO05D005326 1.1e-11 73.2 117 45.3
Haze_06929 Corylus avellana HOM05D004063 ORTHO05D005326 1.1e-11 73.2 117 46.2
Haze_06936 Corylus avellana HOM05D004063 ORTHO05D005326 1.1e-11 73.2 117 46.2
Lj4g0024263 Lotus japonicus HOM05D004063 ORTHO05D005326 1.1e-11 73.2 115 46.1
MD06G1125000 Malus domestica HOM05D004063 ORTHO05D005326 1.1e-11 73.2 117 46.2
Prupe.5G135600 Prunus persica HOM05D004063 ORTHO05D005326 1.1e-11 73.2 117 46.2
TAR376G1187 Trochodendron aralioides HOM05D004063 ORTHO05D005326 1.1e-11 73.2 115 45.2
unitig_22.g5884 Utricularia gibba HOM05D004063 ORTHO05D005326 1.1e-11 73.2 115 44.3
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 1.4e-11 72.8 121 40.5
Cfa000095 Carpinus fangiana HOM05D004063 ORTHO05D005326 1.4e-11 72.8 117 45.3
AUR62019619 Chenopodium quinoa HOM05D004063 ORTHO05D005326 1.4e-11 72.8 117 45.3
COL.COLO4_38533 Corchorus olitorius HOM05D004063 ORTHO05D005326 1.4e-11 72.8 117 45.3
Dinv31945 Davidia involucrata HOM05D004063 ORTHO05D005326 1.4e-11 72.8 117 45.3
Lalb_Chr16g0384201 Lupinus albus HOM05D004063 ORTHO05D005326 1.4e-11 72.8 117 46.2
Nn6g31864 Nelumbo nucifera HOM05D004063 ORTHO05D005326 1.4e-11 72.8 119 42.9
Oeu007480.1 Olea europaea HOM05D004063 ORTHO05D005326 1.4e-11 72.8 117 45.3
Hund14546 Selenicereus undatus HOM05D004063 ORTHO05D005326 1.4e-11 72.8 117 45.3
Thecc.08G059500 Theobroma cacao HOM05D004063 ORTHO05D005326 1.4e-11 72.8 117 45.3
AUR62039603 Chenopodium quinoa HOM05D004063 ORTHO05D005326 1.9e-11 72.4 117 45.3
Duzib093G1691 Durio zibethinus HOM05D004063 ORTHO05D005326 1.9e-11 72.4 112 45.5
PGR083G1742 Punica granatum HOM05D004063 ORTHO05D005326 1.9e-11 72.4 115 43.5
TWI36G0802 Tripterygium wilfordii HOM05D004063 ORTHO05D005326 1.9e-11 72.4 117 45.3
AT1G20575 Arabidopsis thaliana HOM05D004063 ORTHO05D005326 2.4e-11 72.0 115 43.5
CARHR021040 Cardamine hirsuta HOM05D004063 ORTHO05D005326 2.4e-11 72.0 115 43.5
Migut.C00386 Erythranthe guttata HOM05D004063 ORTHO05D005326 2.4e-11 72.0 117 44.4
Eucgr.F01769 Eucalyptus grandis HOM05D004063 ORTHO05D005326 2.4e-11 72.0 115 44.3
HanXRQChr05g0144881 Helianthus annuus HOM05D004063 ORTHO05D005326 2.4e-11 72.0 117 45.3
HanXRQChr15g0492711 Helianthus annuus HOM05D004063 ORTHO05D005326 2.4e-11 72.0 117 45.3
Hma1.2p1_0157F.1_g069400 Hydrangea macrophylla HOM05D004063 ORTHO05D005326 2.4e-11 72.0 117 44.4
Sopen04g035990 Solanum pennellii HOM05D004063 ORTHO05D005326 2.4e-11 72.0 117 45.3
Atru.chr13.138 Acer truncatum HOM05D004063 ORTHO05D005326 3.2e-11 71.6 117 44.4
arahy.Tifrunner.gnm1.ann1.WN1LH4 Arachis hypogaea HOM05D004063 ORTHO05D005326 3.2e-11 71.6 84 52.4
CSS0047740 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 3.2e-11 71.6 117 44.4
Cc00_g23370 Coffea canephora HOM05D004063 ORTHO05D005326 3.2e-11 71.6 117 44.4
DCAR_003678 Daucus carota HOM05D004063 ORTHO05D005326 3.2e-11 71.6 117 45.3
FvH4_5g10320 Fragaria vesca HOM05D004063 ORTHO05D005326 3.2e-11 71.6 115 44.3
FAN13G1863 Fragaria x ananassa HOM05D004063 ORTHO05D005326 3.2e-11 71.6 115 44.3
FAN18G2216 Fragaria x ananassa HOM05D004063 ORTHO05D005326 3.2e-11 71.6 115 44.3
Gohir.A01G105500 Gossypium hirsutum HOM05D004063 ORTHO05D005326 3.2e-11 71.6 117 44.4
Gohir.A02G084400 Gossypium hirsutum HOM05D004063 ORTHO05D005326 3.2e-11 71.6 117 44.4
Gohir.D02G100300 Gossypium hirsutum HOM05D004063 ORTHO05D005326 3.2e-11 71.6 117 44.4
Gorai.002G116900 Gossypium raimondii HOM05D004063 ORTHO05D005326 3.2e-11 71.6 117 44.4
Gorai.005G113700 Gossypium raimondii HOM05D004063 ORTHO05D005326 3.2e-11 71.6 117 44.4
Lsat_1_v5_gn_9_45181 Lactuca sativa HOM05D004063 ORTHO05D005326 3.2e-11 71.6 117 44.4
RcHm_v2.0_Chr7g0187901 Rosa chinensis HOM05D004063 ORTHO05D005326 3.2e-11 71.6 117 45.3
SGA_v2.0_scaffold82G26227 Striga asiatica HOM05D004063 ORTHO05D005326 3.2e-11 71.6 117 44.4
THA.LOC104809761 Tarenaya hassleriana HOM05D004063 ORTHO05D005326 3.2e-11 71.6 117 44.4
EL10Ac4g08397 Beta vulgaris HOM05D004063 ORTHO05D005326 4.1e-11 71.2 114 45.6
BcaC05g25963 Brassica carinata HOM05D004063 ORTHO05D005326 4.1e-11 71.2 115 43.5
C05p19140 Brassica napus HOM05D004063 ORTHO05D005326 4.1e-11 71.2 115 43.5
Gohir.D01G091800 Gossypium hirsutum HOM05D004063 ORTHO05D005326 4.1e-11 71.2 117 44.4
Oeu000693.1 Olea europaea HOM05D004063 ORTHO05D005326 4.1e-11 71.2 117 44.4
Os03g0824400 Oryza sativa ssp. japonica HOM05D004063 ORTHO05D005326 4.1e-11 71.2 115 43.5
CiPaw.07G138500 Carya illinoinensis HOM05D004063 ORTHO05D005326 5.4e-11 70.9 115 44.3
Ciclev10003501m.g Citrus clementina HOM05D004063 ORTHO05D005326 5.4e-11 70.9 116 44.0
Dinv05531 Davidia involucrata HOM05D004063 ORTHO05D005326 5.4e-11 70.9 117 44.4
SalBow5G0233 Salvia bowleyana HOM05D004063 ORTHO05D005326 5.4e-11 70.9 117 43.6
SalBow5G1556 Salvia bowleyana HOM05D004063 ORTHO05D005326 5.4e-11 70.9 117 43.6
SalBow5G2049 Salvia bowleyana HOM05D004063 ORTHO05D005326 5.4e-11 70.9 117 42.7
SalBow5G2247 Salvia bowleyana HOM05D004063 ORTHO05D005326 5.4e-11 70.9 117 43.6
SalBow7G2995 Salvia bowleyana HOM05D004063 ORTHO05D005326 5.4e-11 70.9 117 43.6
ATR0693G211 Amborella trichopoda HOM05D004063 ORTHO05D005326 7.1e-11 70.5 117 45.3
MSTRG.978 Avicennia marina HOM05D004063 ORTHO05D005326 7.1e-11 70.5 117 43.6
CAN.G311.117 Capsicum annuum HOM05D004063 ORTHO05D005326 7.1e-11 70.5 117 44.4
Lj4A11G65 Lonicera japonica HOM05D004063 ORTHO05D005326 7.1e-11 70.5 117 43.6
Solyc04g082390.3 Solanum lycopersicum HOM05D004063 ORTHO05D005326 7.1e-11 70.5 117 44.4
PGSC0003DMG400009980 Solanum tuberosum HOM05D004063 ORTHO05D005326 7.1e-11 70.5 117 44.4
arahy.Tifrunner.gnm1.ann1.Z2LGXF Arachis hypogaea HOM05D004063 ORTHO05D013367 9.2e-11 70.1 111 44.1
Carub.0001s2006 Capsella rubella HOM05D004063 ORTHO05D005326 9.2e-11 70.1 115 43.5
FAN04G0504 Fragaria x ananassa HOM05D004063 ORTHO05D005326 9.2e-11 70.1 115 43.5
FAN08G1355 Fragaria x ananassa HOM05D004063 ORTHO05D005326 9.2e-11 70.1 115 43.5
Nitab4.5_0000588g0070 Nicotiana tabacum HOM05D004063 ORTHO05D005326 9.2e-11 70.1 117 44.4
Peaxi162Scf00893g00009 Petunia axillaris HOM05D004063 ORTHO05D005326 9.2e-11 70.1 117 44.4
Rhsim01G0045200 Rhododendron simsii HOM05D004063 ORTHO05D005326 9.2e-11 70.1 117 43.6
RhsimUnG0172300 Rhododendron simsii HOM05D004063 ORTHO05D005326 9.2e-11 70.1 117 43.6
Zm00001eb062940 Zea mays HOM05D004063 ORTHO05D005326 9.2e-11 70.1 115 41.7
ClCG11G018680 Citrullus lanatus HOM05D004063 ORTHO05D005326 1.2e-10 69.7 115 44.3
Manes.10G039800 Manihot esculenta HOM05D004063 ORTHO05D005326 1.2e-10 69.7 117 45.3
PSO063G2900 Papaver somniferum HOM05D004063 ORTHO05D005326 1.6e-10 69.3 117 42.7
PSO832G0952 Papaver somniferum HOM05D004063 ORTHO05D005326 1.6e-10 69.3 117 42.7
Aqoxy5G01076 Aquilegia oxysepala HOM05D004063 ORTHO05D005326 2.1e-10 68.9 117 42.7
MELO3C017019.2 Cucumis melo HOM05D004063 ORTHO05D005326 2.7e-10 68.6 115 43.5
Sed0026987 Sechium edule HOM05D004063 ORTHO05D005326 2.7e-10 68.6 117 44.4
GSVIVG01008672001 Vitis vinifera HOM05D004063 ORTHO05D005326 2.7e-10 68.6 117 42.7
CDE05G0316 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 3.5e-10 68.2 115 42.6
Potri.002G010300 Populus trichocarpa HOM05D004063 ORTHO05D005326 3.5e-10 68.2 117 44.4
Potri.005G250900 Populus trichocarpa HOM05D004063 ORTHO05D005326 3.5e-10 68.2 117 44.4
Sabra05G0194100 Salix brachista HOM05D001348 ORTHO05D002788 3.5e-10 68.2 117 44.4
Cc02_g33840 Coffea canephora HOM05D004063 ORTHO05D005326 4.6e-10 67.8 110 45.5
Sabra02G0007700 Salix brachista HOM05D004063 ORTHO05D005326 4.6e-10 67.8 117 44.4
CsaV3_4G037210 Cucumis sativus L. HOM05D004063 ORTHO05D005326 6.0e-10 67.4 115 42.6
vmacro17869 Vaccinium macrocarpon HOM05D004063 ORTHO05D005326 6.0e-10 67.4 130 39.2
arahy.Tifrunner.gnm1.ann1.T1UNZ1 Arachis hypogaea HOM05D004063 ORTHO05D005326 7.8e-10 67.0 99 45.5
BcaB03g14313 Brassica carinata HOM05D004063 ORTHO05D005326 7.8e-10 67.0 121 42.1
SEGI_30145 Sequoiadendron giganteum HOM05D004063 ORTHO05D005326 7.8e-10 67.0 117 42.7
BraA06t24763Z Brassica rapa HOM05D004063 ORTHO05D005326 1.7e-09 65.9 116 41.4
HPP92_006203 Vanilla planifolia HOM05D004063 ORTHO05D005326 2.3e-09 65.5 117 41.9
MBI08_g41353_MAGBIO Magnolia biondii HOM05D004063 ORTHO05D005326 5.1e-09 64.3 89 48.3
SalBow5G3904 Salvia bowleyana HOM05D004063 ORTHO05D005326 1.5e-08 62.8 55 61.8
Mapoly0048s0015 Marchantia polymorpha HOM05D004063 ORTHO05D005326 2.5e-08 62.0 115 39.1
A06p16570 Brassica napus HOM05D004063 ORTHO05D005326 3.3e-08 61.6 119 42.0
Cpa.g.c43717 Carica papaya HOM05D004063 ORTHO05D005326 3.3e-08 61.6 55 63.6
SMO147G0209 Selaginella moellendorffii HOM05D004063 ORTHO05D005326 7.3e-08 60.5 112 38.4
MCO11G313 Micromonas commoda HOM05D004063 ORTHO05D005326 9.6e-08 60.1 111 40.5
Pp3c13_6200 Physcomitrium patens HOM05D004063 ORTHO05D005326 6.2e-07 57.4 114 37.7
Aa31LG7G4830 Aethionema arabicum HOM05D004063 ORTHO05D005326 1.4e-06 56.2 102 40.2
CBR_g50625 Chara braunii HOM05D004063 ORTHO05D005326 1.4e-06 56.2 112 38.4
vmacro04405 Vaccinium macrocarpon HOM05D004063 ORTHO05D005326 1.4e-06 56.2 55 60.0
CDE05G0379 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 2.4e-06 55.5 104 39.4
PRCOL_00004250 Prasinoderma coloniale HOM05D004063 ORTHO05D005326 3.1e-06 55.1 109 38.5
SalBow5G0394 Salvia bowleyana HOM05D004063 ORTHO05D005326 6.9e-06 53.9 98 38.8
SalBow5G4311 Salvia bowleyana HOM05D004063 ORTHO05D005326 6.9e-06 53.9 98 38.8


User provided reference genes

Program Settings